mRNA_S-dermatodea_contig9536.17557.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 3.690e-138 Identity = 236/435 (54.25%), Postives = 288/435 (66.21%), Query Frame = 1
Query: 19 AMQAHTQQEFGASIQSGASTADRLDGKGWLTVTGRPNPRKPDAGFSFLVDGTS----MQNRDENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELLRTRASNSLLGTVAAPGQECEESRPSG-GTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASFGVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRADAISWERLHLPAFPYFQYLN-------------------KKQGRAAAGWVRILTSVLRDCYMKRLENGNLEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
AMQAHTQ+EF AS + G S ADR G GWL +T RPNPR D+ S+ V G S + RD EDGHNFK +PWSRH+V+FE + LVV C +G TD +A+L + G G+P RSE TRVRSLGYVGSFLREYGSAAELLR S+SLL VAAPGQ+C SG GTF+ LDTS VPLN +Q AV++LTGGLD++VGPPGTGKSTTI+H+ SR+ + RVL+T RNQAVDAVT+KV SFGVLVFGNE R+G +KN T+ GRM ND EL+ WR+ W+K + A A+SW RLHLP FP L ++ GRAA W L VL+ + KRL NG+L Q+ L Q++ L+K+ + LS G R +L RLE LTR+RIFT+TRVLICTVDSTERM+
Sbjct: 92 AMQAHTQKEFEASARQGVSNADRQGG-GWLVLTCRPNPRWQDSRLSYYVHGKSENGGLGTRDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACGEGVTDNEAFLAITP----GTDGIPVRSEHLHTRVRSLGYVGSFLREYGSAAELLRRDESDSLLNAVAAPGQQCTLPSSSGAGTFLPRGQVRTLDTSSVPLNATQKDAVLSLTGGLDLVVGPPGTGKSTTIYHINESRIRAEGRVLITSIRNQAVDAVTEKVDSFGVLVFGNEARLGPHSKNFTMAGRMANDAELLFWRDARETWTKHLKSAQAVSWSRLHLPNFPGVARLFALEQESLKSTGTGKKHHQLRRSGRAAGKWAFALKRVLKANFYKRLVNGSLAQRLMLHQLKALDKWVRLLSEGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTERMV 520
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A6H5JRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT8_9PHAE) HSP 1 Score: 298 bits (762), Expect = 1.400e-90 Identity = 194/440 (44.09%), Postives = 248/440 (56.36%), Query Frame = 1
Query: 19 AMQAHTQQEFGASIQSGASTADRLDGKGWLTVTGRPNPRKPDAGFSFLVDGTS----MQNRDENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELLRTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVT--CTRNQAVDAVTQKVASFGVL----VFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRADAISWERLHLPAFPYFQYLN-------------------KKQGRAAAGWVRILTSVLRDCYMKRLENGNLEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
AMQAHTQ+EF AS + G S ADR G GWL +T RPNPR D+ S+ V G S + +D EDGHNFK +PWSRH+V+FE + LVV C +G TD QA+L + G G+P SE TRVRSLGYVGSFLREYGSAAELLR S+SLL VAAPGQ S GTF+ P + +R+ L+ + +++ W DA+ T + +AV + SF L VFGNE R+G +KN T+ GRM ND EL+ WR+ + W+K ++A A+SW RLHLP+FP L ++ GR A W LT VL+ + KRLENG+ Q+ LRQ+ L+K+ + LS G R +L RLE LTR+RIFT+TRVLICTVDSTERM+
Sbjct: 92 AMQAHTQKEFEASARQGVSNADRQGG-GWLLLTCRPNPRWQDSCLSYYVHGKSENGGLDTQDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACVEGVTDNQAFLAIVP----GADGIPVLSEHLQTRVRSLGYVGSFLREYGSAAELLRRDESDSLLNAVAAPGQCTLPSSSGAGTFL-PRGQVFGNEARLGLHSKNFTMAGRMANDAELL-----------FWR--------DAQATWTKHLKKAKAVSWRRLHLPSFPGLRARGVFGNEARLGLHSKNFTMAGRMANDAELLFWRDARATWTKHLEKAKAVSWRRLHLPSFPGIARLLALEQESLRSTGTGEKHDKLRRSGRTAGKWAFALTCVLKANFYKRLENGSRAQRLMLRQLNALDKWVRLLSQGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTERMV 505
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA) HSP 1 Score: 153 bits (387), Expect = 4.760e-37 Identity = 149/440 (33.86%), Postives = 203/440 (46.14%), Query Frame = 1
Query: 22 MQAHTQQEFGASIQSGASTADRLDGKGWLTVTGR-PNPRKPDAGFSFLVDG------TSMQNRDENEDGHNFKDEPWSRHVVQFEGKD---VPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAEL---LRTR----ASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF--GVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRADAISWERLHLPAFPYFQYLNKKQGRAAAGWVRILTSVLRDCYMKRLENGNL-EQKKTLRQIRVLEKYKQ----------FLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
MQAHT EF A+ + ++A+ GR P P + F ++ D T Q+ D +++G EPW +H+VQ + D V L D D L A G V ++RSLGY+GSFL +Y SA L LRTR A+ +L A P ++ S GT R DT VP+N Q AV L GGL II GPPGTGKSTTI+H++ SRV P A+VLVTC+RNQAVDAV K+A +LVFG E R+GD AK +T+T R+ P + W +++ + N A VR +VL +G E+ +TLR R+LE+ +Q A + +L ++A + I TRV CT+DST RM+
Sbjct: 86 MQAHTALEFQAAAAAALASAE-----------GRHPEPAQLWWNFGWVSDAKWRALRTRGQSLDFSDEG-----EPWVKHLVQVKETDSYHVARLARRDPDSGDDVLVLLPTVEAGGRAREVV---------QMRSLGYLGSFLLQYTSAQALRYQLRTRTLPPAAQHMLQLAADPTRQLSSSGQ--GTLRRGPVHLLTDT--VPINAGQRAAVEGLQGGLSIIHGPPGTGKSTTIFHIVESRVQPRAQVLVTCSRNQAVDAVVGKLAGVEGSLLVFGREERLGDKAKQYTLTARLARHPTVAAWLDLMRQLQELRD---------------------NTVPPGTLAARVRQAEAVLAAVVAAGASDGVAQEEMRTLR--RLLERLRQRDYSTLAADILQPAITRLLARVLPEVKAAAKREILASTRVYACTIDSTPRMV 473
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A2P6TVU4_CHLSO (DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVU4_CHLSO) HSP 1 Score: 147 bits (372), Expect = 1.730e-35 Identity = 120/320 (37.50%), Postives = 160/320 (50.00%), Query Frame = 1
Query: 19 AMQAHTQQEFGASIQSGASTADRLDGK----GWLTVTGRPNPRKPDAGFSFLVDGTSMQNR--DENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELL----------RTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF--GVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRAD 924
AMQ+ EF ASI+ A+R + GW + + R +G S L+DG G +F+ + W RH+VQ L +M A D + Q +++ +P S +R+LG+VG FL +Y +A L RTR LL V P SR + T + P A L T VP+N SQ AV L GGL+II GPPGTGKSTTI+H+I++ V PDA+VLVTCTRNQAVD+V KVA G+LVFGN R+G+ A HT+ R+ P +V WR + K D
Sbjct: 114 AMQSTAALEFQASIRQALEQAEREQRRTGVSGWHEFVPQRSRR---SGGSLLLDGGESHGTWVFAGHTGVDFEQDSWGRHLVQVRETGSFHLAIM-AKQDDETQEHVMAL---------LPTVECSGSASMRTLGFVGPFLAQYEAAQGLRYSLHCSTLPDRTRQ---LLAAVVRP--STLYSRGAASTLL-PAGAR-LRTDEVPINASQRAAVEALRGGLNIIHGPPGTGKSTTIFHLIDAGVQPDAQVLVTCTRNQAVDSVVDKVARLEGGILVFGNAKRLGERAAQHTLEARVEAHPAVVVWRAGLDELGKYRMHPD 413
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A813JMW8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JMW8_POLGL) HSP 1 Score: 109 bits (273), Expect = 5.740e-22 Identity = 100/315 (31.75%), Postives = 149/315 (47.30%), Query Frame = 1
Query: 340 GVGDRGVPARSEFTST-RVRSLGYVGSFLREYGSAAEL--LRTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVAS---FGVLVFGNETRVGDFAKNHTI---TGRMYNDPELVHWREVVSNWSKASQRA--DAISWERLHLPAFPYFQYLNKKQGRAAAGWVRILTSVLRDCYMKRLENGNLEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
GVG V R T +V+SLGYVGSFL E+ + EL ++ R + + P + G RP +A VP+NPSQ A+ L L+ I GPPGTGKSTTI+HV+++RV RVLVTC+RN AV+++ QK++ + + VFG RVG+ A+ H + G +++ ++ +V+ S+A + A +W R YL K+ A A LRD RL++ + SA ++L+A + + RV +CT+ ST RML
Sbjct: 1262 GVGKVAVKLRGGAARTGQVKSLGYVGSFLAEFSAILELRGMQPRDMTGPMRAILEPKVDLP-----GSYANRPINAAA-----VPVNPSQRTAIEGLRHALEKIQGPPGTGKSTTIFHVLDARVPAGQRVLVTCSRNVAVESIAQKLSGLEDWPLCVFGPRDRVGETARRHLLDSQVGGQFDERKIGKVALLVAERSRALREAIDGKEAWCRGRRAEGLLLAYLRKRHAAAYA---------LRDL-CSRLDS--------------------YCSAATTSPDWCKTQLQAGKEV-VLARARVFLCTIASTSRML 1535
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A7S4NY20_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NY20_GUITH) HSP 1 Score: 101 bits (252), Expect = 6.280e-22 Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 577 RVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF---GVLVFGNETRVGDFAKNHTITGRMYNDPEL 870
+VP+N Q VM+L L+ + GPPGTGKSTTI+H+I+SR++P +RVLVTC+RN A++++ QK+ S +LVFGN TR+G+ A + + R NDP L
Sbjct: 23 KVPVNSCQKVVVMSLKHALEKVQGPPGTGKSTTIFHIISSRLSPSSRVLVTCSRNVAIESLVQKLESHFSSSMLVFGNVTRIGETACKYLLDARAENDPIL 123
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A813J659_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J659_POLGL) HSP 1 Score: 108 bits (271), Expect = 1.050e-21 Identity = 82/233 (35.19%), Postives = 121/233 (51.93%), Query Frame = 1
Query: 340 GVGDRGVPARSEFTST-RVRSLGYVGSFLREYGSAAEL--LRTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVAS---FGVLVFGNETRVGDFAKNHTI---TGRMYNDPELVHWREVVSNWSKASQRA--DAISWERLHLPAFPYFQYLNKKQGRAAA 1005
GVG V R T +V+SLGYVGSFL E+ + EL ++ R + + P + G RP +A VP+NPSQ A+ L L+ I GPPGTGKSTTI+HV+++RV RVLVTC+RN AV+++ QK++ + + VFG RVG+ A+ H + G +++ ++ +V+ S+A + A +W R YL K+ A A
Sbjct: 1523 GVGKVAVKLRGGAARTGQVKSLGYVGSFLAEFSAILELRGMQPRDMTGPMRAILEPKVDLP-----GSYANRPINAAA-----VPVNPSQRTAIEGLRHALEKIQGPPGTGKSTTIFHVLDARVPAGQRVLVTCSRNVAVESIAQKLSGLEDWPLCVFGPRDRVGETARRHLLDSQVGGQFDERKIGKVALLVAERSRALREAIDGKEAWCRGRRAEGLLLAYLRKRHAAAYA 1745
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A7S4QCG3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QCG3_9DINO) HSP 1 Score: 105 bits (263), Expect = 7.840e-21 Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 1
Query: 325 VAAAQ---GVGDRGVPARS-EFTSTRVRSLGYVGSFLREYGSAAELLR------TRASNSLLGT-VAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASFG---VLVFGNETRVGDFAKNHTI 840
+A AQ GVG V R S VRS+GY+GS+L E+ + EL + TR ++L V PG + +P A S VP+NPSQ A+ L L+ I GPPGTGKSTTI+H++++RV P RVLVTC+RN AV+++ QK+ + VFG RVG+ A+ H +
Sbjct: 16 IATAQRLLGVGSIAVKLRGGSARSGSVRSIGYIGSYLSEFAAILELRKLPPNEVTRPMRAILQPKVDIPGDFAQ----------KPVRA-----SLVPVNPSQGAAINGLQHALEKIQGPPGTGKSTTIFHILDARVPPGQRVLVTCSRNVAVESIAQKLEGLDGWPLCVFGPRDRVGETARRHLL 186
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A812PVU5_9DINO (SETX protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PVU5_9DINO) HSP 1 Score: 106 bits (264), Expect = 8.220e-21 Identity = 66/161 (40.99%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 382 STRVRSLGYVGSFLREYGSAAELLRTRASNSLLGTVAAPGQECEESRPS-GGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVAS---FGVLVFGNETRVGDFAKNHTITGRM 852
S +VRSLGY+GSFL EY +A EL R + ++ V P + E + G F R ++ + VP+NPSQ A+ L L+ I GPPGTGKSTTI+H++++RV RVLVTC+RN AV+++ QK+ + + VFG RVG A+ + + ++
Sbjct: 1768 SGQVRSLGYIGSFLAEYSAALELQRCKPTD-----VTNPMKAILEPKVDLPGDFARRP----VNAALVPVNPSQRAAIEGLKYALEKIQGPPGTGKSTTIFHILDARVPAGQRVLVTCSRNVAVESIAQKLEGLQGWPLCVFGPRDRVGGTARRYLLDSQV 1919
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A7S1JFX9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JFX9_9EUGL) HSP 1 Score: 102 bits (254), Expect = 1.170e-20 Identity = 72/160 (45.00%), Postives = 87/160 (54.37%), Query Frame = 1
Query: 361 PARSEFTSTRVRSLGYVGSFLREYGSAAELLR-----TRASNSLL-GTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF--GVLVFGNETRVG 816
P R S RV SLGY+GSF+ EY A ELL+ T S+L + PG E E R LD VP NPSQ AV L L+ I GPPGTGKSTTI H+I SRV RVLVTC+RN AV+++ QK+ + V GN+ R+G
Sbjct: 192 PLRDAGGSVRVYSLGYIGSFMVEYNCALELLKDCSHVTPLFRSILCPRLNLPG-EYENRR--------------LDLKLVPCNPSQKTAVEGLQYALEKIQGPPGTGKSTTIHHIIMSRVPRGKRVLVTCSRNVAVESIAQKLEGLVDDIFVSGNKDRLG 336 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9536.17557.1 >prot_S-dermatodea_contig9536.17557.1 ID=prot_S-dermatodea_contig9536.17557.1|Name=mRNA_S-dermatodea_contig9536.17557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=410bp MQAHTQQEFGASIQSGASTADRLDGKGWLTVTGRPNPRKPDAGFSFLVDGback to top mRNA from alignment at S-dermatodea_contig9536:861..3093+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9536.17557.1 ID=mRNA_S-dermatodea_contig9536.17557.1|Name=mRNA_S-dermatodea_contig9536.17557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2233bp|location=Sequence derived from alignment at S-dermatodea_contig9536:861..3093+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9536:861..3093+ >mRNA_S-dermatodea_contig9536.17557.1 ID=mRNA_S-dermatodea_contig9536.17557.1|Name=mRNA_S-dermatodea_contig9536.17557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at S-dermatodea_contig9536:861..3093+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |