mRNA_S-dermatodea_contig9517.17543.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9517.17543.1
Unique NamemRNA_S-dermatodea_contig9517.17543.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A7S4F1F4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1F4_CHRCT)

HSP 1 Score: 90.9 bits (224), Expect = 2.420e-19
Identity = 39/80 (48.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   11 NDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDV 250
            NDK+LI VLC RTKTQL++  +++   Y+K L + VKG+ GG+Y +++ YA+  RD +++++ID+AC GFG DES+L+D+
Sbjct:  110 NDKKLIAVLCSRTKTQLQKTIKAYFQLYDKDLRKVVKGETGGDYGRMMYYAMSSRDSYIADVIDQACGGFGCDESMLVDL 189          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A0M0J561_9EUKA (Annexin n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J561_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.890e-17
Identity = 40/90 (44.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:    2 LGTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLID--VSCRKR 265
            LG N  +LI  +C RTK+QL    + +RA+Y+K + E+VKG+ GGNY +++ YAL  R E+V ++ID+AC G+GT E +LI+  ++C ++
Sbjct:  110 LGCNHNKLIAAVCTRTKSQLSTTAKRYRAKYDKDIREEVKGETGGNYGRMMYYALGSRTEYVIDMIDKACEGWGTAEMILIELFITCEQQ 199          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A7S0LFJ1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFJ1_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 4.020e-17
Identity = 36/80 (45.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   11 NDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDV 250
            ND +L  VLC RTK+QL+R  +++  +Y+K L + VKG+ GG+Y +++ +A+  R+ +V+++ID AC+GFG DES L+D+
Sbjct:   49 NDDKLRVVLCTRTKSQLQRTIKAYFQEYDKDLRKVVKGETGGDYGRMMYFAMSSRESYVADVIDYACAGFGCDESALVDL 128          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A7S0IXQ1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IXQ1_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 7.940e-16
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   11 NDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDV 250
            NDK+LI VLC RTK+QL+R  +S+   Y+  L + VKG+ GG+Y +++ YA+  R+ +VS++ID +CSG G +E  L+D+
Sbjct:  110 NDKKLIAVLCSRTKSQLQRTVKSYFQLYDADLRKVVKGETGGDYGRMMFYAMSSRESYVSDVIDVSCSGIGCNEQALVDL 189          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A7S2BC38_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BC38_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 2.710e-15
Identity = 35/82 (42.68%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    5 GTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDV 250
            GT++ +LI VLC RTK+QL+R+ + +R  Y+K + ++VKG+ GGNY K++ YA+  + E+V +++D AC GF  +   LI++
Sbjct:   39 GTDNNKLITVLCSRTKSQLQRVAKRYREMYDKDIRDEVKGETGGNYGKMMYYAMSSKTEYVIDMLDFACGGFFNNYMALIEL 120          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A852KS82_UROIN (Annexin (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A852KS82_UROIN)

HSP 1 Score: 72.8 bits (177), Expect = 7.880e-14
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    5 GTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDVSCRK 262
            GT++K++IEVL  RT  Q +++ Q ++A Y+K L E +KGD+ GN++K++   L    E+ +  + +A  G GTDESLLI++ C +
Sbjct:   18 GTDEKKIIEVLSSRTSEQRQQIKQKYKALYDKDLEEVLKGDLSGNFEKVVLALLDLPCEYEARELQKAMKGAGTDESLLIEILCTR 103          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.970e-13
Identity = 32/81 (39.51%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 LGTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLI 244
            +GTN+ ++I ++C RTK+Q+ER+D+ +R  Y  TL E+++ D+ G+ K  + Y  ME  EF + ++ +A +G GTDE ++I
Sbjct:  302 MGTNEGRVIGIICTRTKSQVERIDEMYRTMYGMTLREQLEKDLSGDLKTFMVYTQMETQEFDALLMKKAMAGIGTDEDIMI 382          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A7S3FEM8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FEM8_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 2.670e-12
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    2 LGTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDV 250
            LG NDK+LI V C RTK QLER    +R  Y+ +L + V  + GG++ K+L+YAL   D + +++ID A  G G  E  LI++
Sbjct:   55 LGCNDKKLIAVTCSRTKAQLERTAAKYRELYDLSLRDDVISETGGDFGKLLKYALAPPDLYFADMIDWATEGMGCSELALIEL 137          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: A0A835YQ69_9STRA (Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ69_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.820e-10
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 2
Query:    2 LGTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSG 217
            LGT++ +L+EVLC RTK QL+ L  +  AQY KTL + V GDV G + K++ YAL + D++ + +   A  G
Sbjct:   54 LGTDESRLVEVLCNRTKAQLDLLSAASVAQYGKTLRQVVSGDVSGGFGKMMVYALQDVDDYGAQVFTNATKG 125          
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Match: UPI001D08FB74 (annexin B10 isoform X2 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D08FB74)

HSP 1 Score: 64.7 bits (156), Expect = 2.920e-10
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 2
Query:    2 LGTNDKQLIEVLCCRTKTQLERLDQSFRAQYEKTLWEKVKGDVGGNYKKILRYALMERDEFVSNIIDEACSGFGTDESLLIDVSCRK 262
            LGT++  +IE+L  R+  Q + + + F+   E+ L E VKG++GGN++K++   LM   E++   +  A +G GT+E  LI++ C K
Sbjct:   34 LGTDEDMIIEILTHRSNQQRQAIAEHFKNVLERDLIEDVKGELGGNFEKVIVALLMPPHEYLCKELKNAMNGAGTNEGTLIEIICSK 120          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9517.17543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4F1F4_CHRCT2.420e-1948.75Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0M0J561_9EUKA1.890e-1744.44Annexin n=1 Tax=Chrysochromulina tobinii TaxID=146... [more]
A0A7S0LFJ1_9EUKA4.020e-1745.00Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0IXQ1_9EUKA7.940e-1646.25Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S2BC38_9EUKA2.710e-1542.68Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A852KS82_UROIN7.880e-1440.70Annexin (Fragment) n=2 Tax=Neognathae TaxID=8825 R... [more]
D8LG01_ECTSI3.970e-1339.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3FEM8_9EUKA2.670e-1243.37Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A835YQ69_9STRA2.820e-1044.44Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
UPI001D08FB742.920e-1035.63annexin B10 isoform X2 n=1 Tax=Coccinella septempu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9517contigS-dermatodea_contig9517:7319..8265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925413.9656522-CDS-S-dermatodea_contig9517:7318..74331622925413.9656522-CDS-S-dermatodea_contig9517:7318..7433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9517 7319..7433 +
1694079917.4459574-CDS-S-dermatodea_contig9517:7318..74331694079917.4459574-CDS-S-dermatodea_contig9517:7318..7433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9517 7319..7433 +
1622925413.9772856-CDS-S-dermatodea_contig9517:8104..82651622925413.9772856-CDS-S-dermatodea_contig9517:8104..8265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9517 8105..8265 +
1694079917.456303-CDS-S-dermatodea_contig9517:8104..82651694079917.456303-CDS-S-dermatodea_contig9517:8104..8265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9517 8105..8265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9517.17543.1prot_S-dermatodea_contig9517.17543.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9517 7319..8265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9517.17543.1

>prot_S-dermatodea_contig9517.17543.1 ID=prot_S-dermatodea_contig9517.17543.1|Name=mRNA_S-dermatodea_contig9517.17543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
LGHQRQAAHRGTVLQDKDPAGEARPVLSRAVREDSLGKGEGRCRRELQKN
PALRLDGEGRVREQHHRRGVLWFWHRRVPSHRCELQEAVTI*
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mRNA from alignment at S-dermatodea_contig9517:7319..8265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9517.17543.1 ID=mRNA_S-dermatodea_contig9517.17543.1|Name=mRNA_S-dermatodea_contig9517.17543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at S-dermatodea_contig9517:7319..8265+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGGCACCAACGACAAGCAGCTCATCGAGGTACTGTGCTGCAGGACAA AGACCCAGCTGGAGAGGCTCGACCAGTCCTTTCGCGCGCAGTACGAGAAG ACTCTCTGGGAAAAGGTGTGTGTTTAGTTGGCGATAATTTTCGAGCGTTC GTTGGTTGACGGATTATTAATAGTATCATACTGACTTCTGTAAAGAATTA TTGTAGAGCTTGAAGAGCATCATGTCCTCAATCCTAGGTCCTGGGAACAC ATGAGAGGCGCACGTTCATAGGTCCCGATGCTTCTCGGAAGACCTGATGA AGTAGCACGACTCAGAACTCCCGTGGCGGTACCTCCGCTCCTCGCATCTG CCCCCCTGTTTAGTCCAACCTCGTGGCTCACGAGTGGCACAGGCGAACAG CGCCTAAAAACTTATTTGGAAACTCGGATGATGGCTCTGTTGAAGTCTTC AACACTTCCGAAAGTATAGTTAAGAGTTCAGAGTGATCTACAGCACTATT ACGCCTTATGTATATTGTACTCTAATACTAGGCGCAGCAACGTACGAGCA TCGTTGCATACAATACGTCGTATTTGCAATGGAGCATGTCCTTAACATCA GGTTTGTTGTACTTCCTTCCCAGGTTGCTCTCCCCAAGTCTTTGGTCGGT GGAACTAACTGTTGTATATATAGCGGCATTCTTCCTAAAACTTCACGTAT GATACCATTAATAGAGCTCTAATGATTAGGCGGTATCATAGCAACAAGTC GCTTGCTTGTGCTTTTGGCCTTGGTGTCGACGGCAGGTGAAGGGAGATGT CGGCGGGAACTACAAAAAAATCCTGCGCTACGCCTTGATGGAGAGGGACG AGTTCGTGAGCAACATCATCGACGAGGCGTGCTCTGGTTTTGGCACCGAC GAGTCCCTTCTCATCGATGTGAGCTGCAGGAAGCGGTTACCATATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9517:7319..8265+

>mRNA_S-dermatodea_contig9517.17543.1 ID=mRNA_S-dermatodea_contig9517.17543.1|Name=mRNA_S-dermatodea_contig9517.17543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig9517:7319..8265+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGGCACCAACGACAAGCAGCTCATCGAGGTACTGTGCTGCAGGACAA
AGACCCAGCTGGAGAGGCTCGACCAGTCCTTTCGCGCGCAGTACGAGAAG
ACTCTCTGGGAAAAGCTTGGGCACCAACGACAAGCAGCTCATCGAGGTAC
TGTGCTGCAGGACAAAGACCCAGCTGGAGAGGCTCGACCAGTCCTTTCGC
GCGCAGTACGAGAAGACTCTCTGGGAAAAGGTGAAGGGAGATGTCGGCGG
GAACTACAAAAAAATCCTGCGCTACGCCTTGATGGAGAGGGACGAGTTCG
TGAGCAACATCATCGACGAGGCGTGCTCTGGTTTTGGCACCGACGAGTCC
CTTCTCATCGATGTGAGCTGCAGGAAGCGGTTACCATATGAGTGAAGGGA
GATGTCGGCGGGAACTACAAAAAAATCCTGCGCTACGCCTTGATGGAGAG
GGACGAGTTCGTGAGCAACATCATCGACGAGGCGTGCTCTGGTTTTGGCA
CCGACGAGTCCCTTCTCATCGATGTGAGCTGCAGGAAGCGGTTACCATAT
GA
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