mRNA_S-dermatodea_contig948.17512.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig948.17512.1
Unique NamemRNA_S-dermatodea_contig948.17512.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 1.700e-147
Identity = 241/397 (60.71%), Postives = 291/397 (73.30%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNK-LSGSPSR------QSXSVARPSSRASPVRAQTQHRGS------LNDEEDEWNQTGAWDRSGV-------------------------PKGNADLAD----EWHTASWARPDD----RRTGGGXXXXXXXERKANITEADRILEKIAKGE-QLKASSWEGGGKVQREQKSLARGKGTWSPSRRR 1052
            V+P++DQVHVDG+RV +RP SE KW+AL+K KGVICTVSDELGRP AV ++PRG E RLVPVGRLDRDSCGLLL+TNENSWINPLTHPSYGHEKTYRV++TSGYPT EEW+ LT+GM+LDGDPNPTRPCIVEVV++DRR+ VTTVD+II+EGKNRQIRRMFEGIGH+V+SITR++HGPIRLK LRPGEWR LE+WE+EKLKNLT KTL+SP K L+ +P+R      Q+ +  R SSR   + +Q Q+ GS      L++EEDEWNQ GAWDRSGV                         P+G     D    EW TASWAR D+    R+  G        +RKA + E DRILE+I KG+ +L+A +WEGGG+V R+ +S A  K  W  SR R
Sbjct:   75 VNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVASIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRELEQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSR---MTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVAPSARAGAPATTASARGGGTPPQGEPAFFDDDDHEWQTASWARKDEKEPTRQGTGKGSRSSSGKRKARVNEGDRILERIKKGDVKLEAPAWEGGGRVDRDNRSNASRKKGWPSSRNR 468          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 1.220e-128
Identity = 202/284 (71.13%), Postives = 240/284 (84.51%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNK-LSGSPSR------QSXSVARPSSRASPVRAQTQHRGS------LNDEEDEWNQTGAWDRSGVPKGNADLA 815
            V+P++DQVHVDG+RV +RP SE KW+AL+K KGVICTVSDELGRP AV ++PRG E RLVPVGRLDRDSCGLLL+TNENSWINPLTHPSYGHEKTYRV++TSGYPT EEW+ LT+GM+LDGDPNPTRPCIVEVV++DRR+ VTTVD+II+EGKNRQIRRMFEGIGH+V+SITR++HGPIRLK LRPGEWR+LE+WE+EKLKNLT KTL+SP K L+ +P+R      Q+ +  R SSR   + +Q Q+ GS      L++EEDEWNQ GAWDRSGV K  A  A
Sbjct:  153 VNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVGSIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRQLEQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSR---MTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVAPSA 433          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA)

HSP 1 Score: 266 bits (679), Expect = 9.890e-80
Identity = 122/201 (60.70%), Postives = 154/201 (76.62%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 605
            VDP+KD + VDG +V +R R E  W+A+HK KGVI + +DELGR   VD +P     RL+PVGRLDRDS GLLL+TN+N+W+N LTHPSYGHEK YRV+IT GYP+P  W  +TEGMML+G+  PT+PC +E++ +D R     +D++++EGKNRQIRRMFE IGH VR+ITR+ HGPI LK LRPGEWR L   EVE+LK
Sbjct:   79 VDPRKDDLLVDGQKVALRSREETAWVAIHKPKGVITSTNDELGRRTVVDLIPGADRMRLLPVGRLDRDSAGLLLLTNDNAWVNVLTHPSYGHEKLYRVAITEGYPSPPAWKKVTEGMMLEGETAPTQPCDIEIISYDERRKHLVLDVVLREGKNRQIRRMFEAIGHPVRAITRLKHGPIGLKQLRPGEWRALTASEVERLK 279          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S2WX07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX07_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.450e-52
Identity = 94/201 (46.77%), Postives = 138/201 (68.66%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 605
            VDP+KD+V VDG+ V  RP  E +W+A++K KGV+CT+ DE  R   +DA+P    ARL+PVGRLDR+S GLLL+TN+NSW++ LTHPS+G  K YR+ +  G+ + +    + +G+ L  +     PC VE VD D R   T++ ++++EG+NRQIRRM + +G  V+S+TR + G + L+ L PG+WR L + EV+ LK
Sbjct:  131 VDPQKDRVTVDGELVSQRPVEEIRWVAMYKPKGVVCTMEDEKDRKTVMDALPGASRARLLPVGRLDRNSAGLLLLTNDNSWLHKLTHPSHGCTKMYRI-VVEGFLSNDVLRRIAQGLQLPDEERKLSPCAVEFVDQDLRQRTTSLRIVLQEGRNRQIRRMMDFVGFPVKSLTRTSVGSVGLRDLSPGDWRELSKKEVDALK 330          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A0G4ETA8_VITBC (S4 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETA8_VITBC)

HSP 1 Score: 194 bits (494), Expect = 4.660e-52
Identity = 100/208 (48.08%), Postives = 137/208 (65.87%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVT--TVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLR-PGEWRRLEEWEVEKLKNLTI 617
            VD   D+V VDG ++ VRP  E KWIA+HK KG IC+++D+  R    D VP     RL+PVGRLDRDS GLLL+TN+N W++PLTHPSYGH+K Y V++ +G P  +  N L EG++L G+   T P  + V    + S  +  T+++ ++EG+NRQ+RRM E IGH V +I R+  GP+ LKG+  PG+WR L+  EV  LK   I
Sbjct:  177 VDALGDRVTVDGRKIAVRPPEEIKWIAVHKPKGYICSMNDDRDRKTVKDLVPMAERLRLLPVGRLDRDSSGLLLLTNDNKWLHPLTHPSYGHQKRYIVTVDNGTPKYDVLNELAEGVLLPGERTKTAPVSIGVFFEPKTSRKSFGTLEVTLREGRNRQLRRMMEFIGHPVLNIRRVDFGPLTLKGITTPGQWRELKPSEVFMLKRAVI 384          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A0G4HIW2_9ALVE (S4 domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HIW2_9ALVE)

HSP 1 Score: 192 bits (488), Expect = 9.240e-51
Identity = 97/216 (44.91%), Postives = 137/216 (63.43%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVV--DFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNKL 644
            V+P+ DQ+ VDG R+ +RP SE KWI LHK KG ICT++DE  R   +D VP     RL+PVGRLDRDS GL+L+TN+N+W++ L+HPS+GH KTY+V + +G P  +    L +GM L  D   T P  + V+  +   +  + ++ + + EG+NRQIRRMFE IGH V SI RI  GP+ L  +  G WR+L   E+  LK   ++  +   +L
Sbjct:  181 VNPRLDQIQVDGKRISMRPPSEIKWILLHKPKGYICTMADERDRKSVLDLVPFASRLRLLPVGRLDRDSSGLILLTNDNAWLHLLSHPSFGHLKTYKVKVKNGVPFGDVLEPLAKGMYLGSDKEKTSPVEIRVMLDEKSHKEPLGSMTVSLLEGRNRQIRRMFESIGHPVHSIKRIRFGPLDLDKVGVGSWRQLNPTEIYSLKRHVLQRAKEKGRL 396          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7R9UB15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB15_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.630e-48
Identity = 95/204 (46.57%), Postives = 135/204 (66.18%), Query Frame = 3
Query:   24 VHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEG-MMLDGDPNPTRP-CIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLR 629
            + VDG  V  R R+   W  +HK KGV+ T+ D+LGR    D VPR RE RLVPVGRLDRD+ G++L+TN+N W++ L+HP++GH K YRV + +G    + + TL  G ++L+GD  P  P  + E + +   +  T+++MI++EG+NRQIRRM E +GH VR+I R A GPI L  L+ GEWR L + EV +LK  + K+ R
Sbjct:  230 ITVDGMPVVQRDRNSIFWCVVHKPKGVLVTMEDDLGRKTVADLVPRARELRLVPVGRLDRDTSGVILLTNDNEWVHRLSHPAFGHLKRYRVVVKNGPVKADVYRTLQRGGVVLEGDERPLAPLAVAEEISYYADTKETSIEMILREGRNRQIRRMMEQLGHPVRTIVRTAVGPIGLGSLKAGEWRTLRKSEVLQLKASSEKSPR 433          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S2V7H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7H6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.020e-43
Identity = 80/157 (50.96%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  165 REARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSP 635
            R  RLVPVGRLDRDS GL+LMTNE S ++ LTHPS+GHEKTYRVSI SG    ++W     G+++ G+  PT PC +E V +D +   + VD+ ++EG+NRQIRRMF+ +G+ V +I R   GP+RL GL  GEW+ L+ +EV+KL+N++    + P
Sbjct:    1 RRMRLVPVGRLDRDSSGLILMTNELSMVHILTHPSFGHEKTYRVSI-SGELKSKDWQKFESGLLISGEKRPTAPCYLEPVLYDSKKKNSVVDVTLREGRNRQIRRMFDHLGYKVVNIKRTQFGPVRLGGLSHGEWKELKHYEVKKLRNISKTKTKKP 156          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: S0EVG8_CHTCT (Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=1077265 RepID=S0EVG8_CHTCT)

HSP 1 Score: 161 bits (408), Expect = 8.890e-42
Identity = 89/203 (43.84%), Postives = 124/203 (61.08%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNL 611
            +DP  D V VDG+R+ +       ++ L+K  GV+ TV D  GRP  +D V     AR+ PVGRLD +S GLLL+TN+      LTHP +   KTYRV +  G+  P+   +L EG++L+     T P  V  VD+D+ +  T +D+ I+EG+NRQ+RRM E +GH VR +TRI  G +RLKGL PG WR+L   E+  L+ L
Sbjct:   39 IDPTHDVVTVDGERIALENAQPFLYLMLNKPVGVVSTVQDPRGRPTVLDVVGP-LPARVYPVGRLDINSSGLLLLTNDGDLAYKLTHPRFEIPKTYRV-VAKGFVGPQAARSLAEGVVLED--GLTAPAEVRFVDYDKGTQSTILDITIREGRNRQVRRMMEAVGHPVRQLTRIGFGNLRLKGLAPGTWRKLRPDELAALRTL 237          
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S0AM87_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AM87_9DINO)

HSP 1 Score: 171 bits (433), Expect = 1.530e-41
Identity = 92/207 (44.44%), Postives = 126/207 (60.87%), Query Frame = 3
Query:    3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCI-VEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRL-KGLRPGEWRRLEEWEVEKLKNLTI 617
            VDPKKD+V +DG R  ++   E  WI L+K KGVI T  D  GR   +D VP  ++ RL+PVGR+DR++ GLLL+TN+  W   + HP Y H K Y+V I +G P+  +   L  G+ L  +P P  P    EV+  ++   + T+   +KEGK RQIRRMFE IGH V+SI R   G ++L + L+ GEWR L   E+ +LK  TI
Sbjct:  302 VDPKKDKVFLDGQRKELKTLGEIIWIMLNKPKGVISTFEDSEGRKTVMDLVPFAKKRRLIPVGRIDRNAAGLLLLTNDYEWQTIMIHPRYEHTKRYKVEIYNGLPSRVKMQALRNGLELPDEPRPLLPLEDFEVMQQNKTDEIATIKFTLKEGKYRQIRRMFEYIGHPVKSIKRTEFGLLQLDRSLKAGEWRMLTPKEIRRLKGPTI 508          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP76_ECTSI1.700e-14760.71Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JKH0_9PHAE1.220e-12871.13S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CPN1_9STRA9.890e-8060.70Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2WX07_9STRA1.450e-5246.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4ETA8_VITBC4.660e-5248.08S4 domain-containing protein n=1 Tax=Vitrella bras... [more]
A0A0G4HIW2_9ALVE9.240e-5144.91S4 domain-containing protein (Fragment) n=1 Tax=Ch... [more]
A0A7R9UB15_9STRA1.630e-4846.57Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2V7H6_9STRA1.020e-4350.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
S0EVG8_CHTCT8.890e-4243.84Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=... [more]
A0A7S0AM87_9DINO1.530e-4144.44Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig948contigS-dermatodea_contig948:11881..16050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.7
Seed ortholog evalue4e-89
Seed eggNOG ortholog2880.D7FP76
EggNOG free text desc.enzyme-directed rRNA pseudouridine synthesis
EggNOG OGs2QT4T@2759,COG1187@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding S4 domain
Ec32 orthologEc-08_000550.1
Exons4
Model size1929
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig948.17512.1prot_S-dermatodea_contig948.17512.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig948 12105..15176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.1215146-UTR-S-dermatodea_contig948:11880..121041622925411.1215146-UTR-S-dermatodea_contig948:11880..12104Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 11881..12104 +
1694079915.3674073-UTR-S-dermatodea_contig948:11880..121041694079915.3674073-UTR-S-dermatodea_contig948:11880..12104Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 11881..12104 +
1622925411.1906176-UTR-S-dermatodea_contig948:15176..160501622925411.1906176-UTR-S-dermatodea_contig948:15176..16050Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 15177..16050 +
1694079915.4459863-UTR-S-dermatodea_contig948:15176..160501694079915.4459863-UTR-S-dermatodea_contig948:15176..16050Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 15177..16050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.13207-CDS-S-dermatodea_contig948:12104..121251622925411.13207-CDS-S-dermatodea_contig948:12104..12125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 12105..12125 +
1694079915.3874562-CDS-S-dermatodea_contig948:12104..121251694079915.3874562-CDS-S-dermatodea_contig948:12104..12125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 12105..12125 +
1622925411.1433303-CDS-S-dermatodea_contig948:13402..135331622925411.1433303-CDS-S-dermatodea_contig948:13402..13533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 13403..13533 +
1694079915.402045-CDS-S-dermatodea_contig948:13402..135331694079915.402045-CDS-S-dermatodea_contig948:13402..13533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 13403..13533 +
1622925411.1584368-CDS-S-dermatodea_contig948:14266..144741622925411.1584368-CDS-S-dermatodea_contig948:14266..14474Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 14267..14474 +
1694079915.4140565-CDS-S-dermatodea_contig948:14266..144741694079915.4140565-CDS-S-dermatodea_contig948:14266..14474Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 14267..14474 +
1622925411.1752405-CDS-S-dermatodea_contig948:14705..151761622925411.1752405-CDS-S-dermatodea_contig948:14705..15176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 14706..15176 +
1694079915.4330711-CDS-S-dermatodea_contig948:14705..151761694079915.4330711-CDS-S-dermatodea_contig948:14705..15176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 14706..15176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig948.17512.1

>prot_S-dermatodea_contig948.17512.1 ID=prot_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=277bp
MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPN
PTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRI
AHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNKLSGSPSRQSGS
VARPSSRASPVRAQTQHRGSLNDEEDEWNQTGAWDRSGVPKGNADLADEW
HTASWARPDDRRTGGGGRGKGKGERKANITEADRILEKIAKGEQLKASSW
EGGGKVQREQKSLARGKGTWSPSRRR*
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mRNA from alignment at S-dermatodea_contig948:11881..16050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig948.17512.1 ID=mRNA_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4170bp|location=Sequence derived from alignment at S-dermatodea_contig948:11881..16050+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGGATCCTAAAAAGGACCAGGTGCATGTCGACGGCGATCGGGTCTTT GTGCGGCCTCGCTCGGAACACAAGTGGATCGCGCTCCACAAGGCAAAGGG GGTAATCTGCACGGTCTCGGACGAATTGGGGAGGCCGTGCGCGGTGGACG CTGTCCCAAGGGGCAGGGAGGCGAGGCTGGTGCCCGTGGGAAGGCTGGAC CGGGACAGCTGCGGGTTGCTGCTGATGACCAACGAGAATTCGTGGGTGAG GGTTCGTTAAACTACTGCAACATACCTGGTACAGTAATGGCACGAGAAGG GCTGATTGGTTGGTGTACATACAGTAATGGTATGAGAAGGGTTGATTGGT TCGGTGTGGGGTGGTGGGTTCACCCCGTCCCTGGCGGAAGGCTAGGATTC CGTATTTGTGTGATGAAGCAGTACAGCAACGCCGTATACAGTTTAATTGA TTGATTGATTGATTTGATTAATTTGCACACGTATAGCCGATCGGCTTAAT CCGACCCGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAATGAACT AATCATAATTCTACTTGTACTATCATATACACCGTACCGCCCCTGGTACT TACTATGGTACAAGAAATAAGAAATAGCACCCCAGATATAGAGAAAAACG CTAGAAGAGAATTCGGACTCAAACAATGCTCCCTCGCCTCTCCACAGGTC CTTTTTTTTTTTTTTTCATTTGCAACGCGGCAGGGACATCAGTATAAGAG TTGGAGCAGGTGGAAAAGAAAAACAAATAGGAAATATAGAGAAAAAGTGG AGCGCGAAAAATAACGAAGCACAGAGGCCAACGAGCAGCTGTACTTGTTT TGCTATTCAGTCGCACGGGCAACACGTTTTCGTCCTTACCTCCCGGGATT CATTGGTAGCTTCTTTTAGACCCAAGACGCTGAAGAAATCTCAAGGAAAA TCCGCGTTTCTGTTACTGGCCTGTCGATAAAGGGTTTTTCGGCGGTGCTT CCAATCCAAGTCGAATTTCGACGGCATACGAGACACCTCCTGTGCGCTGC TCTGCGCCCTAGGGACTATATATGATGCCGGCGACCAAAATGCTCCGGGA GGCGTAGATGCCCGGTGCGCTCCCTGCAAGAGTCAATTGTGTGTGTTCTT CTCTTCCCTGCCGTGGAAAGCGTGAGAGCGAGAGCAGACATAATCCGAGA AAACGGCGAGCTGTGGGAAAATGCTGAACCCAATTCGCGGCAAAATTTGA AGGCACCTCCTGGGATATCATCCCCTGTGAATGCCCACGGGACCCGACTC AGGCCGGCCGGTCGGAAGTGCCGCAAAAACAAAACGCAGTAAAAAAATGA AAGCGTAACTCGAGGGGAAAGACGCGAGGTCGGGGCGCTCATTCTCATAT ATAGCCACAACGCGGAAGCAGTCAGGTCGTCGGGCGTAACAACAGCGCAC AATTCCAACATTCACGGACCAATACGTTTGTTCCGACCGTTCCGCCCTTC GTTTTTGCTCATTGCTTTTCAGATAAACCCGCTGACGCACCCCTCGTACG GCCACGAGAAGACGTATCGCGTCTCGATCACCTCGGGGTATCCTACCCCC GAGGAATGGAATACGCTTACGGAGGGCATGATGCTCGACGGTGACCCGAA TCCGTGAGTTGCTGCTGTCGTTAGTGGAGGTCGATCTCGTTGTCTTAGCC TATCATGTTCCACTCTCTCCCTTTTTCTCACTGGTGCTTTCCGGTAATAC TGTAGTGTGTTTACCTTAATATAGTAAATTGCCCTTCGACAATTTGTAGA CTCGGAATTTGGTTGGTCCTAAACAAACTCCAGGAGAAGATACTTGGCCT ACCTATAATATACATTCCAATTTTTTATGTTGTCGTCCGTGCACTTTCGT TGTTTTTGTATTGTCAAGTATAAGTTTTGATCCTGCACACACGTGACGGC ACGATTCCGGAAGCAAACAATAGGACGGAAAAGGCGCCCTTCCTGTTCGG TACACTCGCCGATGAATGTTGCATGCCAGTTTCTTTGGTGGGTTTCCTCT CAGCAGCCAGCAACAAGCCAGGGCAAAACCGCAAAGCCGAAGAGATCGTC CGCTCCAAACGGACGCCACCCGCACAAATATTCCCTACTTGATCCTGCGA GGAACCAGCACAAGGAGACAGCCTGTGCAGACCCCCGCGTCTAGATCTTA CATCTTGTTTAGCGGAACGCGTTGTTGTGGCTTTTCGCGCGTAGGCTTCC GCTTCGGAAAGCATTTTCCGAGCGCCCTCGTGCAGCGGTAGCCCCATCAT AGCGTACCCCCCAGCTGCTCGTGCTATGCTTGCCAGACGGTGCTAAGTGT CTCGAACCCCCCTACCGCGTTTGCTGCACGTTGTAGCACAAGACCCTGCA TCGTTGAGGTTGTGGATTTCGATCGCCGATCGCTGGTGACCACGGTTGAC ATGATCATAAAGGAGGGCAAAAACAGGCAAATTCGACGCATGTTCGAGGG GATCGGCCACGACGTCAGGTCCATCACGCGCATCGCTCACGGACCTATCA GATTGAAGGGCTTGAGGCCGGGGGAATGGCGGAGGCTCGAGGAGGTATGA TACGCCGAGAACCTTTCTTTGCCCAACGCGTACTTGTAGAGAAATCTCAC CCACTCGGAGGCGTAAGACTTCATCTACCCTTCCGGCCTCTCGTTTCAAT TCAGAACGGTGTCTGAATGAGTAGGGTATTCTCCAGCTGACGGTTTCACG TACCAGGTACGCCTCTTGCCGTTCTACATACCAACGCACAGCCCCCGCTC TTGCCCATCCTTTGGTCCGAAACAGTGGGAGGTAGAGAAGCTGAAAAACT TGACGATCAAGACCCTCAGGAGCCCCAACAAGCTCTCCGGATCGCCGTCT CGACAGAGCGGGTCTGTCGCCAGACCGTCCTCGCGTGCATCACCAGTGCG CGCGCAGACGCAGCACCGAGGCTCTCTAAACGACGAAGAGGACGAATGGA ATCAAACGGGGGCGTGGGACAGAAGCGGAGTCCCGAAGGGCAATGCGGAC CTCGCTGATGAGTGGCATACGGCCTCCTGGGCTCGGCCCGACGACCGCCG AACCGGCGGCGGGGGACGCGGCAAGGGTAAGGGCGAGCGGAAGGCGAACA TCACGGAGGCTGACCGTATCTTGGAGAAGATCGCCAAGGGGGAGCAGTTG AAGGCGTCGTCTTGGGAAGGCGGTGGGAAGGTTCAGCGGGAGCAGAAGTC CTTGGCGAGAGGGAAAGGCACTTGGAGTCCTTCTAGAAGACGCTGAGTCT GCGCCTTGATATTTTCCCTGTTCGGTATAACTTATTAATATGATAGCTGT TTTTGACGCTGCGCGTATGGTTCGCGCTTTTCTTTTCCATGTCGCGCGTA TCGCGTCACGAGAACAGCTCATCGTCGTGGCATATCAGACCTTGACCTTG TGCAGACCTAAGGTTCAACTACTATGAATAAATGTAAGGTGCTTCCCCGC GTTTCGTTTTGTCGTCAGTGATCGGCAGCACGGGTGTCGATTTGGAATGG CTCATCCGATTCGCTACTCTCACCTATATCCGGGCCGGAATCACGCCACC ACCACACGTCACAATTGAGACTCGCACCTCATCTTGGACTTGGAGACCAC CTTACAACATACGGTGCCGCTCTGTCCCCAACCATGTCTCAGTAGATAGG CGACTTCGCCGCATATCGATCAGGCCGAACTAGATTTCCTTACGTTTTGG TTGAGTAATCCATGCTCAGAGTCACCCAGCCAGTTTGCCCCCGCAATTAT TGAAGCGACAAATGCATTATGCACGCGCCGACCGTTGGCAAACGTGGTCC TACTCTATACCGTCCTGCCGAGCACCAGACGCGAAGCCTTTCGAGTCACT CCGTCTTTGTCTTGGGCTGTGCAGGCCTTGATGGTCTTCTCTGCATACCA CCAAAAATCGTAAATGCAGAAGGCGCACAGAATCAAGAGTTAGTTGAAAG AACCACCAAGCCGACTGGGGCCCCATGTTTCCTTGCATTCTGTGCCCCAC GCCCCAAAGTACTACAACACCTCAAAAAGTCAATATTCAACCACAAACAC ATAATGTATTGAACTCTTCGAGCTCGCTCCGTCCCCACTATTTGTTCCTA AAGCCCGTCCCCCTTAGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig948:11881..16050+

>mRNA_S-dermatodea_contig948.17512.1 ID=mRNA_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig948:11881..16050+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCAACGAGAATTCGTGGATGACCAACGAGAATTCGTGGATAAACCC
GCTGACGCACCCCTCGTACGGCCACGAGAAGACGTATCGCGTCTCGATCA
CCTCGGGGTATCCTACCCCCGAGGAATGGAATACGCTTACGGAGGGCATG
ATGCTCGACGGTGACCCGAATCCATAAACCCGCTGACGCACCCCTCGTAC
GGCCACGAGAAGACGTATCGCGTCTCGATCACCTCGGGGTATCCTACCCC
CGAGGAATGGAATACGCTTACGGAGGGCATGATGCTCGACGGTGACCCGA
ATCCCACAAGACCCTGCATCGTTGAGGTTGTGGATTTCGATCGCCGATCG
CTGGTGACCACGGTTGACATGATCATAAAGGAGGGCAAAAACAGGCAAAT
TCGACGCATGTTCGAGGGGATCGGCCACGACGTCAGGTCCATCACGCGCA
TCGCTCACGGACCTATCAGATTGAAGGGCTTGAGGCCGGGGGAATGGCGG
AGGCTCGAGGAGCACAAGACCCTGCATCGTTGAGGTTGTGGATTTCGATC
GCCGATCGCTGGTGACCACGGTTGACATGATCATAAAGGAGGGCAAAAAC
AGGCAAATTCGACGCATGTTCGAGGGGATCGGCCACGACGTCAGGTCCAT
CACGCGCATCGCTCACGGACCTATCAGATTGAAGGGCTTGAGGCCGGGGG
AATGGCGGAGGCTCGAGGAGTGGGAGGTAGAGAAGCTGAAAAACTTGACG
ATCAAGACCCTCAGGAGCCCCAACAAGCTCTCCGGATCGCCGTCTCGACA
GAGCGGGTCTGTCGCCAGACCGTCCTCGCGTGCATCACCAGTGCGCGCGC
AGACGCAGCACCGAGGCTCTCTAAACGACGAAGAGGACGAATGGAATCAA
ACGGGGGCGTGGGACAGAAGCGGAGTCCCGAAGGGCAATGCGGACCTCGC
TGATGAGTGGCATACGGCCTCCTGGGCTCGGCCCGACGACCGCCGAACCG
GCGGCGGGGGACGCGGCAAGGGTAAGGGCGAGCGGAAGGCGAACATCACG
GAGGCTGACCGTATCTTGGAGAAGATCGCCAAGGGGGAGCAGTTGAAGGC
GTCGTCTTGGGAAGGCGGTGGGAAGGTTCAGCGGGAGCAGAAGTCCTTGG
CGAGAGGGAAAGGCACTTGGAGTCCTTCTAGAAGACGCTGATGGGAGGTA
GAGAAGCTGAAAAACTTGACGATCAAGACCCTCAGGAGCCCCAACAAGCT
CTCCGGATCGCCGTCTCGACAGAGCGGGTCTGTCGCCAGACCGTCCTCGC
GTGCATCACCAGTGCGCGCGCAGACGCAGCACCGAGGCTCTCTAAACGAC
GAAGAGGACGAATGGAATCAAACGGGGGCGTGGGACAGAAGCGGAGTCCC
GAAGGGCAATGCGGACCTCGCTGATGAGTGGCATACGGCCTCCTGGGCTC
GGCCCGACGACCGCCGAACCGGCGGCGGGGGACGCGGCAAGGGTAAGGGC
GAGCGGAAGGCGAACATCACGGAGGCTGACCGTATCTTGGAGAAGATCGC
CAAGGGGGAGCAGTTGAAGGCGTCGTCTTGGGAAGGCGGTGGGAAGGTTC
AGCGGGAGCAGAAGTCCTTGGCGAGAGGGAAAGGCACTTGGAGTCCTTCT
AGAAGACGCTGA
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