mRNA_S-dermatodea_contig948.17512.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI) HSP 1 Score: 444 bits (1143), Expect = 1.700e-147 Identity = 241/397 (60.71%), Postives = 291/397 (73.30%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNK-LSGSPSR------QSXSVARPSSRASPVRAQTQHRGS------LNDEEDEWNQTGAWDRSGV-------------------------PKGNADLAD----EWHTASWARPDD----RRTGGGXXXXXXXERKANITEADRILEKIAKGE-QLKASSWEGGGKVQREQKSLARGKGTWSPSRRR 1052
V+P++DQVHVDG+RV +RP SE KW+AL+K KGVICTVSDELGRP AV ++PRG E RLVPVGRLDRDSCGLLL+TNENSWINPLTHPSYGHEKTYRV++TSGYPT EEW+ LT+GM+LDGDPNPTRPCIVEVV++DRR+ VTTVD+II+EGKNRQIRRMFEGIGH+V+SITR++HGPIRLK LRPGEWR LE+WE+EKLKNLT KTL+SP K L+ +P+R Q+ + R SSR + +Q Q+ GS L++EEDEWNQ GAWDRSGV P+G D EW TASWAR D+ R+ G +RKA + E DRILE+I KG+ +L+A +WEGGG+V R+ +S A K W SR R
Sbjct: 75 VNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVASIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRELEQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSR---MTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVAPSARAGAPATTASARGGGTPPQGEPAFFDDDDHEWQTASWARKDEKEPTRQGTGKGSRSSSGKRKARVNEGDRILERIKKGDVKLEAPAWEGGGRVDRDNRSNASRKKGWPSSRNR 468
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE) HSP 1 Score: 399 bits (1024), Expect = 1.220e-128 Identity = 202/284 (71.13%), Postives = 240/284 (84.51%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNK-LSGSPSR------QSXSVARPSSRASPVRAQTQHRGS------LNDEEDEWNQTGAWDRSGVPKGNADLA 815
V+P++DQVHVDG+RV +RP SE KW+AL+K KGVICTVSDELGRP AV ++PRG E RLVPVGRLDRDSCGLLL+TNENSWINPLTHPSYGHEKTYRV++TSGYPT EEW+ LT+GM+LDGDPNPTRPCIVEVV++DRR+ VTTVD+II+EGKNRQIRRMFEGIGH+V+SITR++HGPIRLK LRPGEWR+LE+WE+EKLKNLT KTL+SP K L+ +P+R Q+ + R SSR + +Q Q+ GS L++EEDEWNQ GAWDRSGV K A A
Sbjct: 153 VNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVGSIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRQLEQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSR---MTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVAPSA 433
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA) HSP 1 Score: 266 bits (679), Expect = 9.890e-80 Identity = 122/201 (60.70%), Postives = 154/201 (76.62%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 605
VDP+KD + VDG +V +R R E W+A+HK KGVI + +DELGR VD +P RL+PVGRLDRDS GLLL+TN+N+W+N LTHPSYGHEK YRV+IT GYP+P W +TEGMML+G+ PT+PC +E++ +D R +D++++EGKNRQIRRMFE IGH VR+ITR+ HGPI LK LRPGEWR L EVE+LK
Sbjct: 79 VDPRKDDLLVDGQKVALRSREETAWVAIHKPKGVITSTNDELGRRTVVDLIPGADRMRLLPVGRLDRDSAGLLLLTNDNAWVNVLTHPSYGHEKLYRVAITEGYPSPPAWKKVTEGMMLEGETAPTQPCDIEIISYDERRKHLVLDVVLREGKNRQIRRMFEAIGHPVRAITRLKHGPIGLKQLRPGEWRALTASEVERLK 279
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S2WX07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX07_9STRA) HSP 1 Score: 196 bits (498), Expect = 1.450e-52 Identity = 94/201 (46.77%), Postives = 138/201 (68.66%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLK 605
VDP+KD+V VDG+ V RP E +W+A++K KGV+CT+ DE R +DA+P ARL+PVGRLDR+S GLLL+TN+NSW++ LTHPS+G K YR+ + G+ + + + +G+ L + PC VE VD D R T++ ++++EG+NRQIRRM + +G V+S+TR + G + L+ L PG+WR L + EV+ LK
Sbjct: 131 VDPQKDRVTVDGELVSQRPVEEIRWVAMYKPKGVVCTMEDEKDRKTVMDALPGASRARLLPVGRLDRNSAGLLLLTNDNSWLHKLTHPSHGCTKMYRI-VVEGFLSNDVLRRIAQGLQLPDEERKLSPCAVEFVDQDLRQRTTSLRIVLQEGRNRQIRRMMDFVGFPVKSLTRTSVGSVGLRDLSPGDWRELSKKEVDALK 330
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A0G4ETA8_VITBC (S4 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETA8_VITBC) HSP 1 Score: 194 bits (494), Expect = 4.660e-52 Identity = 100/208 (48.08%), Postives = 137/208 (65.87%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVT--TVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLR-PGEWRRLEEWEVEKLKNLTI 617
VD D+V VDG ++ VRP E KWIA+HK KG IC+++D+ R D VP RL+PVGRLDRDS GLLL+TN+N W++PLTHPSYGH+K Y V++ +G P + N L EG++L G+ T P + V + S + T+++ ++EG+NRQ+RRM E IGH V +I R+ GP+ LKG+ PG+WR L+ EV LK I
Sbjct: 177 VDALGDRVTVDGRKIAVRPPEEIKWIAVHKPKGYICSMNDDRDRKTVKDLVPMAERLRLLPVGRLDRDSSGLLLLTNDNKWLHPLTHPSYGHQKRYIVTVDNGTPKYDVLNELAEGVLLPGERTKTAPVSIGVFFEPKTSRKSFGTLEVTLREGRNRQLRRMMEFIGHPVLNIRRVDFGPLTLKGITTPGQWRELKPSEVFMLKRAVI 384
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A0G4HIW2_9ALVE (S4 domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HIW2_9ALVE) HSP 1 Score: 192 bits (488), Expect = 9.240e-51 Identity = 97/216 (44.91%), Postives = 137/216 (63.43%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVV--DFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSPNKL 644
V+P+ DQ+ VDG R+ +RP SE KWI LHK KG ICT++DE R +D VP RL+PVGRLDRDS GL+L+TN+N+W++ L+HPS+GH KTY+V + +G P + L +GM L D T P + V+ + + + ++ + + EG+NRQIRRMFE IGH V SI RI GP+ L + G WR+L E+ LK ++ + +L
Sbjct: 181 VNPRLDQIQVDGKRISMRPPSEIKWILLHKPKGYICTMADERDRKSVLDLVPFASRLRLLPVGRLDRDSSGLILLTNDNAWLHLLSHPSFGHLKTYKVKVKNGVPFGDVLEPLAKGMYLGSDKEKTSPVEIRVMLDEKSHKEPLGSMTVSLLEGRNRQIRRMFESIGHPVHSIKRIRFGPLDLDKVGVGSWRQLNPTEIYSLKRHVLQRAKEKGRL 396
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7R9UB15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB15_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.630e-48 Identity = 95/204 (46.57%), Postives = 135/204 (66.18%), Query Frame = 3
Query: 24 VHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEG-MMLDGDPNPTRP-CIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLR 629
+ VDG V R R+ W +HK KGV+ T+ D+LGR D VPR RE RLVPVGRLDRD+ G++L+TN+N W++ L+HP++GH K YRV + +G + + TL G ++L+GD P P + E + + + T+++MI++EG+NRQIRRM E +GH VR+I R A GPI L L+ GEWR L + EV +LK + K+ R
Sbjct: 230 ITVDGMPVVQRDRNSIFWCVVHKPKGVLVTMEDDLGRKTVADLVPRARELRLVPVGRLDRDTSGVILLTNDNEWVHRLSHPAFGHLKRYRVVVKNGPVKADVYRTLQRGGVVLEGDERPLAPLAVAEEISYYADTKETSIEMILREGRNRQIRRMMEQLGHPVRTIVRTAVGPIGLGSLKAGEWRTLRKSEVLQLKASSEKSPR 433
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S2V7H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7H6_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.020e-43 Identity = 80/157 (50.96%), Postives = 111/157 (70.70%), Query Frame = 3
Query: 165 REARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNLTIKTLRSP 635
R RLVPVGRLDRDS GL+LMTNE S ++ LTHPS+GHEKTYRVSI SG ++W G+++ G+ PT PC +E V +D + + VD+ ++EG+NRQIRRMF+ +G+ V +I R GP+RL GL GEW+ L+ +EV+KL+N++ + P
Sbjct: 1 RRMRLVPVGRLDRDSSGLILMTNELSMVHILTHPSFGHEKTYRVSI-SGELKSKDWQKFESGLLISGEKRPTAPCYLEPVLYDSKKKNSVVDVTLREGRNRQIRRMFDHLGYKVVNIKRTQFGPVRLGGLSHGEWKELKHYEVKKLRNISKTKTKKP 156
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: S0EVG8_CHTCT (Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=1077265 RepID=S0EVG8_CHTCT) HSP 1 Score: 161 bits (408), Expect = 8.890e-42 Identity = 89/203 (43.84%), Postives = 124/203 (61.08%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCIVEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRLKGLRPGEWRRLEEWEVEKLKNL 611
+DP D V VDG+R+ + ++ L+K GV+ TV D GRP +D V AR+ PVGRLD +S GLLL+TN+ LTHP + KTYRV + G+ P+ +L EG++L+ T P V VD+D+ + T +D+ I+EG+NRQ+RRM E +GH VR +TRI G +RLKGL PG WR+L E+ L+ L
Sbjct: 39 IDPTHDVVTVDGERIALENAQPFLYLMLNKPVGVVSTVQDPRGRPTVLDVVGP-LPARVYPVGRLDINSSGLLLLTNDGDLAYKLTHPRFEIPKTYRV-VAKGFVGPQAARSLAEGVVLED--GLTAPAEVRFVDYDKGTQSTILDITIREGRNRQVRRMMEAVGHPVRQLTRIGFGNLRLKGLAPGTWRKLRPDELAALRTL 237
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Match: A0A7S0AM87_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AM87_9DINO) HSP 1 Score: 171 bits (433), Expect = 1.530e-41 Identity = 92/207 (44.44%), Postives = 126/207 (60.87%), Query Frame = 3
Query: 3 VDPKKDQVHVDGDRVFVRPRSEHKWIALHKAKGVICTVSDELGRPCAVDAVPRGREARLVPVGRLDRDSCGLLLMTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNPTRPCI-VEVVDFDRRSLVTTVDMIIKEGKNRQIRRMFEGIGHDVRSITRIAHGPIRL-KGLRPGEWRRLEEWEVEKLKNLTI 617
VDPKKD+V +DG R ++ E WI L+K KGVI T D GR +D VP ++ RL+PVGR+DR++ GLLL+TN+ W + HP Y H K Y+V I +G P+ + L G+ L +P P P EV+ ++ + T+ +KEGK RQIRRMFE IGH V+SI R G ++L + L+ GEWR L E+ +LK TI
Sbjct: 302 VDPKKDKVFLDGQRKELKTLGEIIWIMLNKPKGVISTFEDSEGRKTVMDLVPFAKKRRLIPVGRIDRNAAGLLLLTNDYEWQTIMIHPRYEHTKRYKVEIYNGLPSRVKMQALRNGLELPDEPRPLLPLEDFEVMQQNKTDEIATIKFTLKEGKYRQIRRMFEYIGHPVKSIKRTEFGLLQLDRSLKAGEWRMLTPKEIRRLKGPTI 508 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig948.17512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig948.17512.1 >prot_S-dermatodea_contig948.17512.1 ID=prot_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=277bp MTNENSWINPLTHPSYGHEKTYRVSITSGYPTPEEWNTLTEGMMLDGDPNback to top mRNA from alignment at S-dermatodea_contig948:11881..16050+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig948.17512.1 ID=mRNA_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4170bp|location=Sequence derived from alignment at S-dermatodea_contig948:11881..16050+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig948:11881..16050+ >mRNA_S-dermatodea_contig948.17512.1 ID=mRNA_S-dermatodea_contig948.17512.1|Name=mRNA_S-dermatodea_contig948.17512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig948:11881..16050+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |