mRNA_S-dermatodea_contig1286.1747.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1286.1747.1
Unique NamemRNA_S-dermatodea_contig1286.1747.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.280e-48
Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
Query:   28 GGDNGFPSTALPFLAAEKDAALDGAVANSSKLKGYEGHMSALGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            GG+NG         +  + A  +G  +   KLKGYEGHMSALGKLGAGS  SRLFPTPGKK+M++VGQAVQ W MI++GDRLCLGLSGGKDSMTLLHVLL L+K+API FEVACATVDPQT SFDPSP
Sbjct:  822 GGENG---------SVPQGANGEGIESGGGKLKGYEGHMSALGKLGAGSAESRLFPTPGKKIMRAVGQAVQAWRMIEDGDRLCLGLSGGKDSMTLLHVLLHLQKRAPITFEVACATVDPQTPSFDPSP 940          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A485LRI5_9STRA (Aste57867_23115 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRI5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.120e-33
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   46 PSTALPFLAAEKDAALDGA--------------VANSSKLKGYEGHMSALGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            P+ A P  AA     L G                A+S+ L+G E  +++  K+ A   T++LFPTP KK+M+ VGQA+ +W MI++GDRL LG+SGGKDS++LLH+LLAL+K+AP+ F +ACATVDPQTASFDPSP
Sbjct:  648 PTLAAPAAAAAAPVCLTGTCPIVKTEKYPLRNPTADSNPLQGLEQAIASTDKISAQVTTTQLFPTPPKKMMRLVGQAMMQWQMIEDGDRLLLGVSGGKDSLSLLHILLALQKRAPVRFTLACATVDPQTASFDPSP 783          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A024U7E6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7E6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.530e-33
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   16 PLRSGGDNGFP---STALPFLAAEKDA-ALDGAVANSSKLKGYEGHMSALGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            P RS   +  P   +   PF+A + +   L    A+++ L+G E  ++A GK+     T+RLFP P KK+M+ VGQA+ +W MIQ+GDRL LG+SGGKDS++LLH+LL L+K+AP+ F +ACATVDPQT SFDPSP
Sbjct:  642 PTRSSAPSAEPVCLTGMCPFIAPKTEKYPLRDPSASTNPLQGLEQAIAATGKIAQQVTTTRLFPQPPKKMMRLVGQAMMQWQMIQDGDRLLLGVSGGKDSLSLLHILLTLQKRAPVRFTIACATVDPQTPSFDPSP 777          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A7S3XUF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUF4_HETAK)

HSP 1 Score: 127 bits (318), Expect = 3.610e-33
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  181 SRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            ++LFP P KK+M++VG A++EW MI+EGDRLCLGLSGGKDS+ LLHVLLAL++KAPI FE+ACATVDP TASFDP P
Sbjct:   57 AKLFPAPPKKMMRTVGTAIKEWGMIKEGDRLCLGLSGGKDSLALLHVLLALQRKAPIRFELACATVDPMTASFDPRP 133          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: W4GX72_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GX72_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.830e-32
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  106 ANSSKLKGYEGHMSALGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            A+S+ L+G E  ++A  K+     T++LFPTP KKLM+ VGQA+ +W MI++GDRL LG+SGGKDS++LLH+LL L+K+AP+ F +ACATVDPQT SFDPSP
Sbjct:  678 ADSNPLQGLEQAIAATDKIAQQVTTTQLFPTPPKKLMRLVGQAMMQWQMIEDGDRLLLGVSGGKDSLSLLHILLTLQKRAPVRFTIACATVDPQTPSFDPSP 779          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A6G0WTZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTZ0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.500e-32
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   52 TALPFLAAEKDAALDGAVANSSKLKGYEGHMSALGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            T  P   +EK    + A  +S+ L+G +  +++  K+     T++LFP P KKLM+ VGQA+ +W MIQ+GDRL LG+SGGKDS++LLH+LL L+K+AP+ F VACATVDPQT SFDPSP
Sbjct:  670 TCPPPTKSEKYPLRNQAAVDSNPLQGLQQAIASTDKISVQVSTTQLFPQPPKKLMRLVGQAMMQWKMIQDGDRLLLGVSGGKDSLSLLHILLTLQKRAPVRFSVACATVDPQTPSFDPSP 789          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: I2CPH6_NANGC (Pp-loop domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH6_NANGC)

HSP 1 Score: 124 bits (311), Expect = 7.200e-32
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1
Query:  187 LFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            LFP   KKL+K VG+A+++W MI+EGDRLCLGLSGGKDS+TLLHVLL L+KKAPI F VACATVDPQT+SFDPSP
Sbjct:    8 LFPPVPKKLLKQVGEAIRDWDMIKEGDRLCLGLSGGKDSLTLLHVLLHLQKKAPIRFSVACATVDPQTSSFDPSP 82          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A812RBY0_SYMMI (TtcA protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RBY0_SYMMI)

HSP 1 Score: 124 bits (312), Expect = 6.840e-31
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   58 LPFLAAEKDAALDGAVANSSKLKGYEGHMSALGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            + F A + DA+  G  A ++   G + +      LG GS       TP KK++K VGQA+ +W MI+EGDRL LGLSGGKDS+TLLH+LL L++KAP+NF +ACATVDPQT SFDPSP
Sbjct:  286 MVFGADKTDASSSGGAAVATSCGGDDSYTP---NLGDGSTGRAKVATPPKKILKPVGQAIADWGMIEEGDRLLLGLSGGKDSLTLLHILLHLQRKAPVNFTIACATVDPQTESFDPSP 400          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A484EB29_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB29_BRELC)

HSP 1 Score: 125 bits (313), Expect = 1.410e-30
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  181 SRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            + LFPTP KKL++SVGQA+ +W MIQEGDRL LG+SGGKDS++LLHVLL+ +K+AP+ FEVACATVDPQT SFDPSP
Sbjct:  746 NNLFPTPPKKLLRSVGQAMMQWDMIQEGDRLLLGVSGGKDSLSLLHVLLSFQKRAPVRFEVACATVDPQTPSFDPSP 822          
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Match: A0A662Y5N6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5N6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.640e-30
Identity = 70/139 (50.36%), Postives = 88/139 (63.31%), Query Frame = 1
Query:   13 YPLRSGGDNGFPSTALPFLAAEKDAALDGAVANSSKLKGYEGHMSALG------KLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKDSMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP 411
            YPLRS   NG  STA P     +     G  A +          +A         +   +  ++LFPTP KKLM+ VGQA+ +W MIQ+GDRL LG+SGGKDS++LLHVLL  +K+AP+ FE+ACATVDPQTASFDPSP
Sbjct:  711 YPLRST-TNGGASTATPVGERSRGDCSTGRCAATCAPPSXXXATTATSVQEVTTAMSQKTAATKLFPTPPKKLMRWVGQALMQWDMIQDGDRLLLGVSGGKDSLSLLHVLLRFQKRAPVRFELACATVDPQTASFDPSP 848          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1286.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR81_ECTSI1.280e-4870.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485LRI5_9STRA1.120e-3350.74Aste57867_23115 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U7E6_9STRA1.530e-3350.74Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S3XUF4_HETAK3.610e-3374.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W4GX72_9STRA1.830e-3259.80Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A6G0WTZ0_9STRA2.500e-3253.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
I2CPH6_NANGC7.200e-3277.33Pp-loop domain protein (Fragment) n=1 Tax=Nannochl... [more]
A0A812RBY0_SYMMI6.840e-3154.24TtcA protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A484EB29_BRELC1.410e-3074.03Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A662Y5N6_9STRA2.640e-3050.36Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1286contigS-dermatodea_contig1286:6012..7709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue9.1e-42
Seed eggNOG ortholog2880.D7FR81
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAminotransferase class V domain
Ec32 orthologEc-08_005030.1
Exons3
Model size413
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1286.1747.1prot_S-dermatodea_contig1286.1747.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1286 6012..7709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.0182095-CDS-S-dermatodea_contig1286:6011..60691622924265.0182095-CDS-S-dermatodea_contig1286:6011..6069Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 6012..6069 -
1694079135.7944283-CDS-S-dermatodea_contig1286:6011..60691694079135.7944283-CDS-S-dermatodea_contig1286:6011..6069Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 6012..6069 -
1622924265.03137-CDS-S-dermatodea_contig1286:6440..65531622924265.03137-CDS-S-dermatodea_contig1286:6440..6553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 6441..6553 -
1694079135.8088975-CDS-S-dermatodea_contig1286:6440..65531694079135.8088975-CDS-S-dermatodea_contig1286:6440..6553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 6441..6553 -
1622924265.0439308-CDS-S-dermatodea_contig1286:7469..77091622924265.0439308-CDS-S-dermatodea_contig1286:7469..7709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 7470..7709 -
1694079135.8197684-CDS-S-dermatodea_contig1286:7469..77091694079135.8197684-CDS-S-dermatodea_contig1286:7469..7709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1286 7470..7709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1286.1747.1

>prot_S-dermatodea_contig1286.1747.1 ID=prot_S-dermatodea_contig1286.1747.1|Name=mRNA_S-dermatodea_contig1286.1747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
DSYKYPLRSGGDNGFPSTALPFLAAEKDAALDGAVANSSKLKGYEGHMSA
LGKLGAGSPTSRLFPTPGKKLMKSVGQAVQEWAMIQEGDRLCLGLSGGKD
SMTLLHVLLALKKKAPINFEVACATVDPQTASFDPSP
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mRNA from alignment at S-dermatodea_contig1286:6012..7709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1286.1747.1 ID=mRNA_S-dermatodea_contig1286.1747.1|Name=mRNA_S-dermatodea_contig1286.1747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1698bp|location=Sequence derived from alignment at S-dermatodea_contig1286:6012..7709- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACAGTTACAAGTACCCGCTGCGCTCAGGCGGCGACAACGGGTTCCCCTC TACCGCGCTCCCGTTCCTCGCTGCTGAGAAGGACGCGGCTCTTGACGGGG CTGTGGCCAACAGCAGCAAACTTAAAGGTTACGAAGGGCACATGTCGGCG CTAGGGAAGCTGGGTGCCGGTTCACCCACGTCGAGGTTGTTTCCGACGCC CGGGAAGAAGCTCATGAAGTCCGTGGGACAGGCTGTGCAGGTTTGTTTTT GGCTACTGGCGTGAGTGTCGAGTATCTCTCTTGTTTGTTGGCTGGCTGTA TACACCCGCAGACCTGGAGCAACTGATTGGGTGGTTTATTTGATTTATTG GTTTTCCCACGTGTGGCCTAGCTGATTGCGACCCGACTTGTGGTCACCTG GGCAAAGAGTCGAGGGAATACATAGAACCAGACACTTAATTGTACGATAA ATGCTAGGTTTACACACCGGTAGCTTGTCTAAATCTAGTTTTTTTTCAAT AAGTGTGGATTGCCATGGACAATAACTAGAATGGAAGGAAACTTGTACCT ACTACAGAGGGAGATGGGATGATTCCTCGTGACAGACGGGATCGGGATAA GCCTGGTCGTCGGAAGTGTTGATTGGGATGGTTGGTTGATTCACACTGAC AGCTGGGCGGCTAGATTCGACCCGACGTGCGCAAATAACCAAAAGGGAAA ACGCTTATGTATATCGGAAGTCTGCTTCTACGTATACAATGTATACTGGG TACAAGAGAGAATCATACACACCCGCCAGAACAAGAGTCGTCATCGAGCC TATGGCTCTCTTGCTGGCAGGCCATGTGCGAACAAAAAAAACACGCACAC AACGACCGTCGACTGTTAGATGACGGTTTTGTGTATCGTATTTCCTTTCG TAGTTTGAAGCACGACATTGCACGCAGGCTCAAGGGGCGTGCTTGATGTC CTTGTAAGTATTTCAACGCGGTCCCTCGCGTAGGTGCTCCACCGAGGCCA TCGCCATGCTTTTCCGGCACGGTATAGGCTGCATGTTCGACCTCAATGCT CCAGCAATATTTGCCCGAGGCAAAATCGCGCGCAGCACTGACTTTCCCCC ACCCCCGTTTTTGATCCCACTCGTCATTTCGATGGCACCGTCGCTTTGCT TGAAAGGAATGGGCAATGATTCAGGAGGGTGACCGGCTCTGCCTCGGTTT GTCGGGAGGCAAGGACTCCATGACGTTGCTGCACGTGCTGCTTGCCCTTA AAAAAAAGGCGCCGATCAAGTAAGAAACGCCGCGAGGTGGCGTGATGCCA CGCGGCCGCGGGGCTTGTCGCTTCTCAGTCCGGGAGACCGTATTGGACGA TAATTTTCCGCTGTCTTTGTTCTTAATCCCGAGGCCTGTCAGGCTGGGTG GTGCCGGCGTCGAAGGATATGATGCAACGCGAAATATGCTGACACAGGGA ACGAGACAATCCAACTCTAAGTACGGTAGTTACGGATTGATAGAAAACAA TGGGGTATGTTCCTCTTCCAGGAACGTTGCTCCATTTCGCTCCTAACCTC TATCCCTTCCCTTCGCGCGGTGCTATGTCCGAATCGTGCCTGACGTCGAC GGCGCGCGCGTTTTGGCATCGGAACGCGGTGTTTGATCAGTTTCGAGGTG GCGTGCGCCACGGTGGACCCGCAGACGGCTTCCTTCGATCCATCCCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1286:6012..7709-

>mRNA_S-dermatodea_contig1286.1747.1 ID=mRNA_S-dermatodea_contig1286.1747.1|Name=mRNA_S-dermatodea_contig1286.1747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig1286:6012..7709- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACAGTTACAAGTACCCGCTGCGCTCAGGCGGCGACAACGGGTTCCCCTC
TACCGCGCTCCCGTTCCTCGCTGCTGAGAAGGACGCGGCTCTTGACGGGG
CTGTGGCCAACAGCAGCAAACTTAAAGGTTACGAAGGGCACATGTCGGCG
CTAGGGAAGCTGGGTGCCGGTTCACCCACGTCGAGGTTGTTTCCGACGCC
CGGGAAGAAGCTCATGAAGTCCGTGGGACAGGCTGTGCAGGACAGTTACA
AGTACCCGCTGCGCTCAGGCGGCGACAACGGGTTCCCCTCTACCGCGCTC
CCGTTCCTCGCTGCTGAGAAGGACGCGGCTCTTGACGGGGCTGTGGCCAA
CAGCAGCAAACTTAAAGGTTACGAAGGGCACATGTCGGCGCTAGGGAAGC
TGGGTGCCGGTTCACCCACGTCGAGGTTGTTTCCGACGCCCGGGAAGAAG
CTCATGAAGTCCGTGGGACAGGCTGTGCAGGAATGGGCAATGATTCAGGA
GGGTGACCGGCTCTGCCTCGGTTTGTCGGGAGGCAAGGACTCCATGACGT
TGCTGCACGTGCTGCTTGCCCTTAAAAAAAAGGCGCCGATCAAGAATGGG
CAATGATTCAGGAGGGTGACCGGCTCTGCCTCGGTTTGTCGGGAGGCAAG
GACTCCATGACGTTGCTGCACGTGCTGCTTGCCCTTAAAAAAAAGGCGCC
GATCAATTTCGAGGTGGCGTGCGCCACGGTGGACCCGCAGACGGCTTCCT
TCGATCCATCCCCTTTTCGAGGTGGCGTGCGCCACGGTGGACCCGCAGAC
GGCTTCCTTCGATCCATCCCCT
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