mRNA_S-dermatodea_contig12856.1745.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12856.1745.1
Unique NamemRNA_S-dermatodea_contig12856.1745.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A6H5J7N3_9PHAE (E1 ubiquitin-activating enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7N3_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 2.310e-122
Identity = 196/231 (84.85%), Postives = 207/231 (89.61%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGG--GHLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKIA 687
            D+AVY + L  M VP FKP DGVKIATTEAEAKEQ  G       LEDVD QCERML ELP+PADMKDFRL+VV+FDKDLD+HMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLV MEVYKI+QE PLESYKNWFLNLALPQFSCSEPLPPAKT TMIKG+EWKWSAWDSLELE ADITLQ LF+ MKE+YGLEVTMLSHGVSILYSFFA+KKKIA
Sbjct:  821 DDAVYASTLSQMEVPVFKPVDGVKIATTEAEAKEQATGXXXXXAQLEDVDAQCERMLGELPKPADMKDFRLEVVEFDKDLDEHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVSMEVYKIMQEKPLESYKNWFLNLALPQFSCSEPLPPAKTATMIKGSEWKWSAWDSLELEGADITLQQLFDIMKEKYGLEVTMLSHGVSILYSFFASKKKIA 1051          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A836CIM1_9STRA (Ubiquitin-activating enzyme E1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM1_9STRA)

HSP 1 Score: 301 bits (771), Expect = 2.580e-92
Identity = 152/237 (64.14%), Postives = 182/237 (76.79%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGH--------LEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKIA 687
            D+A  +AAL S+ VP+F PA+GVKIA TEAEAKE                 + D D QC  ++  LP+PA +  FRL  V+FDKD+D HM  VTAASNLRAR YKIPEADMHRSR IAGKIIPAIATTTALVTGLVC+E+ K+ QE PLE+YKNWFLNLALPQF+CSEP+PPA T   +KG EW+WSAWD +++++ DITL  LF  +++EYGLEVTMLSHGVSIL+SFFA+KKK A
Sbjct:  740 DDAAVLAALSSVIVPDFTPAEGVKIAVTEAEAKEXXXXXXXXXXXXXXXXFMMDTDAQCAALVDALPEPASLGAFRLAAVEFDKDVDAHMVLVTAASNLRARCYKIPEADMHRSRLIAGKIIPAIATTTALVTGLVCLELIKVAQEKPLEAYKNWFLNLALPQFACSEPIPPATTAVKLKGREWRWSAWDCIDVDRGDITLAALFALLRDEYGLEVTMLSHGVSILFSFFASKKKAA 976          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A7S2G964_9STRA (E1 ubiquitin-activating enzyme n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G964_9STRA)

HSP 1 Score: 266 bits (679), Expect = 4.670e-79
Identity = 140/239 (58.58%), Postives = 172/239 (71.97%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGG--------HLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGN----EWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKK 681
            D+A ++A L ++ VP F P DGVKI T E                      L DVD QC+ ++ +LP PA +  F+L  V+FDKD+D+HMEFVTAASNLRAR YKIPEADMHRSR IAGKIIPAIATTTALVTGLVC+E+YK++Q  P+E+YKN F+NLA+P F+ SEP PPA T   I+ +    EWKWSAWD L+++  DITL+ L   M++ YGLE+TMLSHGVSILYSFF NKKK
Sbjct:  759 DDAYFLAFLPNVVVPGFTPKDGVKIKTPEEXXXXXXXXXXXXXXXXXXDEELMDVDAQCDEIIAQLPTPASLAGFQLNPVEFDKDIDEHMEFVTAASNLRARNYKIPEADMHRSRLIAGKIIPAIATTTALVTGLVCLELYKVIQSKPVEAYKNGFVNLAIPVFAFSEPQPPATTLAKIQKDGAPFEWKWSAWDRLDIKLGDITLKQLIAHMEDAYGLELTMLSHGVSILYSFFQNKKK 997          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A7S4D9B8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9B8_HETAK)

HSP 1 Score: 253 bits (646), Expect = 2.730e-77
Identity = 132/230 (57.39%), Postives = 164/230 (71.30%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGG-HLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQE-MPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKI 684
            D A +   L ++ VPEF P  GVKIA  E E               D++ Q +++++ELP P+++  FRL  VDFDKDLDDHM  + A SNLRAR Y IPEAD+HRSR IAGKIIPAI+TTTALV GLVC+E+YK+ Q   PL +YKN F NLALP F+ SEP PPAKTT  ++G EW+WSAWD +++   D+TL+   +  ++E GLEVTMLSHGVSILYSFFANKKKI
Sbjct:  326 DAAYFQGVLPNVMVPEFVPRRGVKIAADEKEXXXXXXXXXXSISATDLEGQAKQIIEELPSPSELAGFRLVPVDFDKDLDDHMTLIAATSNLRARNYAIPEADLHRSRLIAGKIIPAISTTTALVAGLVCLELYKVFQGGKPLAAYKNGFANLALPLFAFSEPQPPAKTTGRLRGREWEWSAWDRIDVRLGDVTLKQFLDHFQDELGLEVTMLSHGVSILYSFFANKKKI 555          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: K0SHI3_THAOC (E1 ubiquitin-activating enzyme n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHI3_THAOC)

HSP 1 Score: 261 bits (666), Expect = 4.810e-77
Identity = 132/233 (56.65%), Postives = 172/233 (73.82%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGHLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKIL----QEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKIA 687
            DEA +V  L ++ VP+F PADGVKIA  EAEAKE+      G +E+ D   + +L  LP+P ++  F+L  ++FDKDLDDHM FVTA SNLRA  Y IP  D HRSR IAG+IIPAIATTTALVTGL+C+E+YKI+    +E+ +++YKN F+NLA+P  + SEP  PAKT  ++KG EW W+AWDSL++   DITL+      + EYGL+V+M+SHGVSIL+SFFANKKK+A
Sbjct:  818 DEAYFVEVLQNVIVPDFTPADGVKIAANEAEAKEEAKKDEPGDMEESD--ADAVLAGLPKPGELAGFKLNPIEFDKDLDDHMLFVTACSNLRALNYSIPTEDTHRSRAIAGRIIPAIATTTALVTGLICLELYKIIGTPQKELKIDAYKNGFVNLAIPFMTLSEPTAPAKTKAVVKGKEWNWTAWDSLDVNLGDITLKEFITHFENEYGLDVSMISHGVSILFSFFANKKKLA 1048          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A7S1BIN6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIN6_9STRA)

HSP 1 Score: 250 bits (639), Expect = 5.630e-77
Identity = 124/233 (53.22%), Postives = 170/233 (72.96%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGHLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKIL----QEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKIA 687
            +E  +   L  + +P+F P  GVKI T E E +E+          DVD++C+++  ELP P+ +  FRL++++FDKD+D+HM FVTA SNLRA  Y+IP  D H+SR IAG+IIPAIATTTALVTGL+C+E+YK++    +E+P+E+YKN FLNLA+P  + +EP  PAKT  M+KG EW+WSAWDS+ +   DITL+   E  ++EY LE+ MLS+GVS+LYSFFANKKK+A
Sbjct:  253 EEEYFQQFLPEIIIPDFTPKQGVKIQTKEDEKEEEAPPAD----MDVDSECDKIFAELPAPSSLAGFRLELIEFDKDIDEHMLFVTACSNLRAINYQIPTEDTHKSRAIAGRIIPAIATTTALVTGLICLEMYKVVGSANKELPIEAYKNSFLNLAIPFMTSTEPQGPAKTKAMLKGKEWEWSAWDSIHMNIGDITLKEFMEYFEKEYNLEINMLSYGVSLLYSFFANKKKVA 481          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A7S4IAT4_9STRA (E1 ubiquitin-activating enzyme n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IAT4_9STRA)

HSP 1 Score: 260 bits (665), Expect = 6.290e-77
Identity = 131/232 (56.47%), Postives = 173/232 (74.57%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGHLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKIL----QEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKI 684
            DE  +   L ++ VP+F P +GVKIA  +AEAKE    G GG ++DVD + +++L  LP+P+++  F+L  VDFDKD+DDHM FVTA SNLRA  Y IP  D HRSR IAG+IIPAIATTTALVTGLVC+E+YKI+    +++ L++YKN F+NLA+P  + SEP  PA T  M+KG EW W+AWDSL+++  DITL+   +  ++EY LEV+MLS GVSIL+SFFANKKK+
Sbjct:  810 DEEYFRDVLKTVIVPDFSPQEGVKIAANDAEAKENDHSGAGG-MDDVDAEYDKLLGSLPKPSELVGFKLNPVDFDKDIDDHMLFVTACSNLRALNYSIPTEDTHRSRAIAGRIIPAIATTTALVTGLVCLELYKIVGTARKDLKLDAYKNGFVNLAIPFMTLSEPTSPASTKAMLKGKEWNWTAWDSLDMDMGDITLREFVDHFEKEYNLEVSMLSQGVSILFSFFANKKKV 1040          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: A0A7S2RXQ6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RXQ6_9STRA)

HSP 1 Score: 254 bits (650), Expect = 2.900e-76
Identity = 126/232 (54.31%), Postives = 173/232 (74.57%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGHLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKIL----QEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKI 684
            DE  +   LD++ VPEF PA+GVKIA  E+EAK+Q     G   +++D +C+ ++ +LP+ +++  F++  ++FDKD+D+HM FVTA SNLRA  Y IP  D HRSR IAG+IIPAIATTTALVTGLVC+++YK++    +E+ L+ +KN F+NLA+P  + SEP PP KT  ++KG EW W+AWDSL+LE  DITL+ L +    EY L+++MLSHGVSILYSFFANKKK+
Sbjct:  523 DEEYFRQVLDNVIVPEFTPANGVKIAANESEAKQQNDEAPG---DNIDDECDEIIAQLPKASELAGFKVNPIEFDKDVDEHMLFVTACSNLRALNYWIPTEDTHRSRAIAGRIIPAIATTTALVTGLVCLDLYKVIGSARKELTLDMFKNAFINLAIPFMTLSEPTPPEKTKCILKGKEWNWTAWDSLDLELGDITLKELMDHFATEYNLDISMLSHGVSILYSFFANKKKV 751          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: I2CSG2_NANGC (E1 ubiquitin-activating enzyme n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSG2_NANGC)

HSP 1 Score: 257 bits (657), Expect = 5.730e-76
Identity = 130/227 (57.27%), Postives = 174/227 (76.65%), Query Frame = 1
Query:   19 AALDSMSVPEFKPADGVKIATTEAEAKEQGAGGG--GGHLE---DVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKKI 684
            AAL+++ VP+F P DGVKIA T+ EAK+Q   GG  GG +    D++ +CE ++  LP P+ +  F LQ +DFDKD+D HM  VTA SNLRA  YKIPEADMH++RQIAGKIIPAIATTTALVTGLVC+E+YK++ + P+E +K+ F+NLALP F+ SEP PPA  T ++KG EWKWSAWD +++E  D+TL+   + M+E++GLEV+MLSHGVS+L+S   ++K I
Sbjct:  769 AALENVMVPDFSPQDGVKIAVTDTEAKQQAEQGGSDGGAVTSSLDLEARCEAIIASLPPPSALTGFTLQPIDFDKDVDAHMAVVTATSNLRAANYKIPEADMHKTRQIAGKIIPAIATTTALVTGLVCLELYKLVLKKPIEDFKSAFVNLALPLFTFSEPQPPASQTAVVKGEEWKWSAWDRIDIE-GDLTLREFLKYMEEQFGLEVSMLSHGVSLLHSSLTSRKNI 994          
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Match: H3G877_PHYRM (E1 ubiquitin-activating enzyme n=33 Tax=Phytophthora TaxID=4783 RepID=H3G877_PHYRM)

HSP 1 Score: 256 bits (655), Expect = 9.770e-76
Identity = 129/227 (56.83%), Postives = 167/227 (73.57%), Query Frame = 1
Query:    1 DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGHLEDVDTQCERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQEMPLESYKNWFLNLALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERMKEEYGLEVTMLSHGVSILYSFFANKKK 681
            D   +   L S+ VPEF P  GVKIA ++AE KE GA  G   LEDVD QCE +LKELP+P+ +  +R+Q ++FDKD D HME + + SNLRAR YKIPE DMH+SR IAGKIIPAIATTTALVTGLVC E  K+ QE PL+ YKN F+NLALP F+ +EP+ P  T TM+KG E+KW+AWD LE+++ D+TL+      ++EY  EV+MLS+GV+ILY+ ++ K +
Sbjct:  756 DRDSFAQVLASIHVPEFSPRKGVKIAASDAELKEGGAAPG---LEDVDAQCEFILKELPKPSTLAGYRMQAIEFDKDDDAHMEVIVSVSNLRARSYKIPEEDMHKSRFIAGKIIPAIATTTALVTGLVCFEFLKVFQEKPLDHYKNGFVNLALPLFTFAEPIEPKATKTMLKGEEYKWTAWDRLEVDRGDMTLKEFLAYFEKEYDAEVSMLSYGVTILYAMYSQKSR 979          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12856.1745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7N3_9PHAE2.310e-12284.85E1 ubiquitin-activating enzyme n=2 Tax=Ectocarpus ... [more]
A0A836CIM1_9STRA2.580e-9264.14Ubiquitin-activating enzyme E1 n=1 Tax=Tribonema m... [more]
A0A7S2G964_9STRA4.670e-7958.58E1 ubiquitin-activating enzyme n=1 Tax=Florenciell... [more]
A0A7S4D9B8_HETAK2.730e-7757.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0SHI3_THAOC4.810e-7756.65E1 ubiquitin-activating enzyme n=1 Tax=Thalassiosi... [more]
A0A7S1BIN6_9STRA5.630e-7753.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4IAT4_9STRA6.290e-7756.47E1 ubiquitin-activating enzyme n=2 Tax=Odontella a... [more]
A0A7S2RXQ6_9STRA2.900e-7654.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
I2CSG2_NANGC5.730e-7657.27E1 ubiquitin-activating enzyme n=1 Tax=Nannochloro... [more]
H3G877_PHYRM9.770e-7656.83E1 ubiquitin-activating enzyme n=33 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12856contigS-dermatodea_contig12856:342..4047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.3
Seed ortholog evalue8.4e-104
Seed eggNOG ortholog2880.D7G2V5
Preferred nameUBA1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGsCOG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size705
Cds size705
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12856.1745.1prot_S-dermatodea_contig12856.1745.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12856 342..4047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.8889997-CDS-S-dermatodea_contig12856:341..5241622924264.8889997-CDS-S-dermatodea_contig12856:341..524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 342..524 -
1694079135.720225-CDS-S-dermatodea_contig12856:341..5241694079135.720225-CDS-S-dermatodea_contig12856:341..524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 342..524 -
1622924264.8990066-CDS-S-dermatodea_contig12856:1527..16801622924264.8990066-CDS-S-dermatodea_contig12856:1527..1680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 1528..1680 -
1694079135.7356043-CDS-S-dermatodea_contig12856:1527..16801694079135.7356043-CDS-S-dermatodea_contig12856:1527..1680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 1528..1680 -
1622924264.9094157-CDS-S-dermatodea_contig12856:2586..27521622924264.9094157-CDS-S-dermatodea_contig12856:2586..2752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 2587..2752 -
1694079135.744575-CDS-S-dermatodea_contig12856:2586..27521694079135.744575-CDS-S-dermatodea_contig12856:2586..2752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 2587..2752 -
1622924264.9217265-CDS-S-dermatodea_contig12856:3844..40471622924264.9217265-CDS-S-dermatodea_contig12856:3844..4047Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 3845..4047 -
1694079135.7535207-CDS-S-dermatodea_contig12856:3844..40471694079135.7535207-CDS-S-dermatodea_contig12856:3844..4047Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12856 3845..4047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12856.1745.1

>prot_S-dermatodea_contig12856.1745.1 ID=prot_S-dermatodea_contig12856.1745.1|Name=mRNA_S-dermatodea_contig12856.1745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
DEAVYVAALDSMSVPEFKPADGVKIATTEAEAKEQGAGGGGGHLEDVDTQ
CERMLKELPQPADMKDFRLQVVDFDKDLDDHMEFVTAASNLRARVYKIPE
ADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKILQEMPLESYKNWFLN
LALPQFSCSEPLPPAKTTTMIKGNEWKWSAWDSLELEQADITLQGLFERM
KEEYGLEVTMLSHGVSILYSFFANKKKIAVSHMF*
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mRNA from alignment at S-dermatodea_contig12856:342..4047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12856.1745.1 ID=mRNA_S-dermatodea_contig12856.1745.1|Name=mRNA_S-dermatodea_contig12856.1745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3706bp|location=Sequence derived from alignment at S-dermatodea_contig12856:342..4047- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAAGCTGTTTACGTGGCCGCACTGGACAGCATGTCGGTCCCGGAGTT CAAGCCCGCGGATGGCGTTAAGATCGCCACGACCGAAGCTGAGGCGAAGG AGCAGGGGGCGGGCGGGGGCGGGGGGCACCTGGAGGACGTCGATACGCAG TGCGAGCGCATGCTTAAGGAGCTGCCGCAGCCAGCGGACATGAAGGACTT CCGGTAAGATTCGCTGGTGGTTTTTGTGGCGGTTAGGAGGCGGGTGAGGG GGGGAGGGGGGTTTCGTTTCAACTAGTAGGTAGCCACGGCTACGCCGGTG AGGTGTGCGTGGTCGCAAGCTGTTTAGCGCTCAAATACAAACATGAAGCT GTTTGGCATCAACCTATGATAGCCCTCTCTAAAAGTGTGGGCATGGTCAC TCTGAAATCGCCATTAAAAAGGGGACAAAGCAGTATTGACCCTTTTGGGA CTACAACTGTTTTCGGGTAACTGTTTGCTGTTATAATACCCTTTTGTTTT GGGACTAAAGCTGTTTTCGGGTAACTGTTTGCAATTATGGTGGCCAACAG TTATACCCGAAAACAGGCTTCGTCCCCAGGCTTAGTCCCAAAGGGGTAAA TAATAATAGCAAACAGTTACCCGAAAACAGCCTTAGTCCCAAAAGGGTTA AGTAATGGAGATATAACGTACTAGTAAACATATCACATGCTAGTAAAGAT ATAACATATTTGTAAAGGTATCACAGATGAGTGTAAGTCTTTGGACCGAA TCACCAGGACAAGGATGTCTGGGGAATCTGGCCATCGGAAGACGTGACCG TACTCAATCGGCAGCCGTCTTCAATGCTGTTTATAGTATATAGCAGGACC CTGTAGCATCACACACACACCGTAGCTTGGGCCGTCTCTTCCTCTCTACA ACCAAGTTGAACCCCAACGCTAGTTCTTTGTTTTTTATATGTTTTATTAT GCCAGGGCGGGGGGGTGGGGGGTACTCATGTTTTGCATGCCTTTAGCTGT TAAGCTATTGAGCAGGCGCCCTTCGGAGGATGGAGCATTGTCCCCACAGG ATCGATCGATCGACCGCCGATGGCAGGTGGCCGACCCTTCCTTCCTGCTT GGCCAAAGGAGGCTCAAAACATTTTTTGATATTATATCTAGAGGGGGTGC AACCATAACATTATCGTTTATTGGGTCTTTTTTCGAACTCCTTTTGAAGT TCAACTTGAACCAAATATAATAATATATGTTTCAACAAGACCGGGGAGTG TGTTTTATTTTGTATCTCTGTTCTTGCTCGTGCACTTCATTTCAGGTTGC AAGTGGTGGACTTCGACAAGGATTTAGATGACCACATGGAGTTCGTCACC GCGGCGTCCAACCTAAGGGCTCGCGTCTACAAGATTCCCGAGGCGGACAT GCACCGCTCCCGACAGATCGCGGGGAAGATCATTCCGGCCATCGCCACCA CCACCGCGCTGGTGAGGGGCTGTGTTGTAGGTGTACCTTTTTAATACTTT TTTTGCGTACTGTACCTTTTAATACCTTTTTCGCGTACTGTACCTTTTCC CCCCAAGTATTTACTGCTGTACCTTTTTTTGCTCATCTTATCGTTGTCCG CTCGGACCGGGGTGTGTGGGTGTGTGTACCCGCCCTGAGTTGTGTGTACC TTTTATTGTTCGGCGTGGCCGCGTTTTTACCTCTTCTTGTCTGTACTTTA AGGTATGACACCAAGCTATGTGTACAAGTACTCCGTTCGGGTACACCTTG TTTGATCCGCTGTTCAAATCTGAGGGAAGTTGGACAAGTCTGAAAGAGAT CAAGTTTTTACATATGATATACTTGTTTTATATTTTGTTTTTTTCTCACT ACTGTATTGTATAATTTTTAGCATGCCCAAGTTCCGAGGTATGCCCCCTC TGTTTCCTAGAGCTTTTGTAGTGTCAATTCCTTCTTTGTGTGTACTATAA AAAGTATATACGTCATTCTGTAGTTTTGTTTTTCGATCTCTTGATTTATC ATGTGACCACGAGCGGGATCGGCAACCATTGGTGGGTCAGTCGGTTGTGT AGGAAAGTGTGACAATCAATCAATAGTTTTGCTTGATTTGATTGATGGTT TTTCACACGTATAGCCGATCGGCTTAGTCGGACCTGAATCCGACTTGTGG CGGTCAGATGCTAGACCCAAAGAGCCAAGGAGAAAATAACTACTCCTAAC TCTACTTCGTCAATACACCATACCGTCCCTGATATTCACTATAGTACAAG AGAGAAGAAATAGTATAGTACCCCAGGTAGAGAAGAGAAACGCCAGAAGA GCACTCGGAATCAGACGATGTGCGTCTGACGTTTCTGTGCGTGCGTGCGT GCGTTTGCGTACGGCAGGTGACAGGACTGGTGTGCATGGAGGTGTACAAG ATCCTGCAGGAAATGCCTCTCGAGTCATACAAAAACTGGTTCCTCAACCT GGCGCTGCCGCAATTCTCTTGCTCCGAGCCGCTGCCGCCGGCCAAGACGA CCACGATGATCAAGGGAAACGTGAGAAATTAAAAAAACAAACGATGGGCC GAATTTTTTCACTTCTTTAGTGTATGCAGTATTTATGAGCTAATAATACC ACTTCGCACGCTTGTTTGTTTAGGATTTAGAGTGGAGCCTTGATGAAAAC ATTTGAGGGGAATAGTGTAGTCTCTACTTCCTGTACACTTTTGATCATCG GGCTTTAGAGTGTAGTCCTTTACTGCGTAGTAGCTTGAATTTCCAAACCC ACGTACTGTATATATGTATCGCCTACCAACACACACCTCACTGGCGTAGC AGTGGCAACCCAGTGTAATAGTTTATGAACTGATAATATCGCTTTTAATG TTTTTTTTGTATACAGTAGCGTTTTTGAGGTGGTCATCGATGGCAAATCG ATGGGTGTACAGAATAGTATTTTGAACCTTGTGTTGGGATATGTCGCCGA GGTCGCACGCCCTGCTCGCTCCACCGCATCCTACCAACACGCACCTCACT GGCGTAGCCGTGGCAACCCACTATTATTGATTGATTGATTTGATTGATTT GCACACGTATAGCCGATCGGCTTAATCCGACCCGACTGGTGGCCAGATAC GCAAAGAGTCAGGGAGAAAAAAATTCAATCATAATTCTACTTCTACTCTA CATCGTACCGTCCCTGGTGTGGATTTATAATGCCTTTGTGAAAATACCAA CATAGGTCTGTCTGATGCAGATTTACCAGGCATTGTGTGCTATACTATTA TAGTAATGTAAGCACCAGGTACAGTTTACGGTATGCTGATGGCGTTTTTT CTGTGGTAGTGGTGGTGGTGGTTAAAAAAGAAAAGAAAAACAGGATTTAA AGTTGTCGGCCCGAGACAAGCGCACAGAGTCAAGGGAAAGCGCTTTAAAA AAAAGCGAACCATAAATATACATTCAAAGAGTACCACGCATGATGTAATG AGCGATGTGAGCATATGTTTTTGATGGTGACATTATTTTGGTGGTGGTGG TTGGGAAAAAAAAAAAAAAACAGGAGTGGAAGTGGTCGGCCTGGGACAGC CTGGAGCTCGAACAGGCGGATATTACTCTGCAAGGCCTATTCGAGCGCAT GAAGGAGGAGTACGGTCTGGAGGTGACCATGCTCAGCCACGGCGTGTCTA TCCTGTACAGCTTCTTCGCCAACAAGAAGAAGATTGCGGTGAGTCACATG TTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12856:342..4047-

>mRNA_S-dermatodea_contig12856.1745.1 ID=mRNA_S-dermatodea_contig12856.1745.1|Name=mRNA_S-dermatodea_contig12856.1745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at S-dermatodea_contig12856:342..4047- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAAGCTGTTTACGTGGCCGCACTGGACAGCATGTCGGTCCCGGAGTT
CAAGCCCGCGGATGGCGTTAAGATCGCCACGACCGAAGCTGAGGCGAAGG
AGCAGGGGGCGGGCGGGGGCGGGGGGCACCTGGAGGACGTCGATACGCAG
TGCGAGCGCATGCTTAAGGAGCTGCCGCAGCCAGCGGACATGAAGGACTT
CCGGATGAAGCTGTTTACGTGGCCGCACTGGACAGCATGTCGGTCCCGGA
GTTCAAGCCCGCGGATGGCGTTAAGATCGCCACGACCGAAGCTGAGGCGA
AGGAGCAGGGGGCGGGCGGGGGCGGGGGGCACCTGGAGGACGTCGATACG
CAGTGCGAGCGCATGCTTAAGGAGCTGCCGCAGCCAGCGGACATGAAGGA
CTTCCGGTTGCAAGTGGTGGACTTCGACAAGGATTTAGATGACCACATGG
AGTTCGTCACCGCGGCGTCCAACCTAAGGGCTCGCGTCTACAAGATTCCC
GAGGCGGACATGCACCGCTCCCGACAGATCGCGGGGAAGATCATTCCGGC
CATCGCCACCACCACCGCGCTGGTTGCAAGTGGTGGACTTCGACAAGGAT
TTAGATGACCACATGGAGTTCGTCACCGCGGCGTCCAACCTAAGGGCTCG
CGTCTACAAGATTCCCGAGGCGGACATGCACCGCTCCCGACAGATCGCGG
GGAAGATCATTCCGGCCATCGCCACCACCACCGCGCTGGTGACAGGACTG
GTGTGCATGGAGGTGTACAAGATCCTGCAGGAAATGCCTCTCGAGTCATA
CAAAAACTGGTTCCTCAACCTGGCGCTGCCGCAATTCTCTTGCTCCGAGC
CGCTGCCGCCGGCCAAGACGACCACGATGATCAAGGGAAACGTGACAGGA
CTGGTGTGCATGGAGGTGTACAAGATCCTGCAGGAAATGCCTCTCGAGTC
ATACAAAAACTGGTTCCTCAACCTGGCGCTGCCGCAATTCTCTTGCTCCG
AGCCGCTGCCGCCGGCCAAGACGACCACGATGATCAAGGGAAACGAGTGG
AAGTGGTCGGCCTGGGACAGCCTGGAGCTCGAACAGGCGGATATTACTCT
GCAAGGCCTATTCGAGCGCATGAAGGAGGAGTACGGTCTGGAGGTGACCA
TGCTCAGCCACGGCGTGTCTATCCTGTACAGCTTCTTCGCCAACAAGAAG
AAGATTGCGGTGAGTCACATGTTCTGAGAGTGGAAGTGGTCGGCCTGGGA
CAGCCTGGAGCTCGAACAGGCGGATATTACTCTGCAAGGCCTATTCGAGC
GCATGAAGGAGGAGTACGGTCTGGAGGTGACCATGCTCAGCCACGGCGTG
TCTATCCTGTACAGCTTCTTCGCCAACAAGAAGAAGATTGCGGTGAGTCA
CATGTTCTGA
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