prot_S-dermatodea_contig9403.17441.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9403.17441.1
Unique Nameprot_S-dermatodea_contig9403.17441.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length124
Homology
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BLAST of mRNA_S-dermatodea_contig9403.17441.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.190e-39
Identity = 89/142 (62.68%), Postives = 101/142 (71.13%), Query Frame = 0 
Query:    1 VDDSDPAEELTEAASKRKEVVGKFNRHARLVMQPPDGAGGSV---RRPALVDNAAMATDLPELRQQGTATQEKLEIAHKNRYRGGGASN-------------GSGATSAGSQPRPQSPR--VIGAVSLAEAQAELGPGFSII 124
            VDDSDP EEL+EAA+KRKEVVGKFNRHARLVMQP           RRPALVD+AA ATD+PELR +    QEKL+IAHKNRYRGGG +N              SGA S GS  RPQSPR  V+  V+LAEA+A+LGPGFSI+
Sbjct:  411 VDDSDPTEELSEAANKRKEVVGKFNRHARLVMQPXXXXXXXXXXXRRPALVDSAASATDMPELRLREEVAQEKLDIAHKNRYRGGGGTNRADSNGGXXXXXXSSGALSVGSLSRPQSPRGMVVETVTLAEAKAQLGPGFSIL 552
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BLAST of mRNA_S-dermatodea_contig9403.17441.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.870e-39
Identity = 87/142 (61.27%), Postives = 103/142 (72.54%), Query Frame = 0 
Query:    1 VDDSDPAEELTEAASKRKEVVGKFNRHARLVMQPPDGAGGSV---RRPALVDNAAMATDLPELRQQGTATQEKLEIAHKNRYRGGGASNGS-------------GATSAGSQPRPQSPR--VIGAVSLAEAQAELGPGFSII 124
            VDDSDP EEL+EAA+KRKEVVGKFNRHARLVMQP           RRPALVD+AA ATD+PELR +    ++KL+IAHKNRYRGGG +NG+             GA SAGS  RPQSPR  ++  V+LAEA+A+LGPGFSI+
Sbjct:  341 VDDSDPTEELSEAANKRKEVVGKFNRHARLVMQPXXXXXXXXVTGRRPALVDSAASATDMPELRLREEVARDKLDIAHKNRYRGGGGTNGADSXXXXXXXXXXXGAVSAGSLSRPQSPRGMLVETVTLAEAKAQLGPGFSIL 482
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9403.17441.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFT0_ECTSI1.190e-3962.68TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE1.870e-3961.27BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9403contigS-dermatodea_contig9403:2011..5638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9403.17441.1mRNA_S-dermatodea_contig9403.17441.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9403 2011..5639 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9403.17441.1 ID=prot_S-dermatodea_contig9403.17441.1|Name=mRNA_S-dermatodea_contig9403.17441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
VDDSDPAEELTEAASKRKEVVGKFNRHARLVMQPPDGAGGSVRRPALVDN
AAMATDLPELRQQGTATQEKLEIAHKNRYRGGGASNGSGATSAGSQPRPQ
SPRVIGAVSLAEAQAELGPGFSII
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