mRNA_S-dermatodea_contig9403.17441.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9403.17441.1
Unique NamemRNA_S-dermatodea_contig9403.17441.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9403.17441.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.190e-39
Identity = 89/142 (62.68%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:    1 VDDSDPAEELTEAASKRKEVVGKFNRHARLVMQPPDGAGGSV---RRPALVDNAAMATDLPELRQQGTATQEKLEIAHKNRYRGGGASN-------------GSGATSAGSQPRPQSPR--VIGAVSLAEAQAELGPGFSII 372
            VDDSDP EEL+EAA+KRKEVVGKFNRHARLVMQP           RRPALVD+AA ATD+PELR +    QEKL+IAHKNRYRGGG +N              SGA S GS  RPQSPR  V+  V+LAEA+A+LGPGFSI+
Sbjct:  411 VDDSDPTEELSEAANKRKEVVGKFNRHARLVMQPXXXXXXXXXXXRRPALVDSAASATDMPELRLREEVAQEKLDIAHKNRYRGGGGTNRADSNGGXXXXXXSSGALSVGSLSRPQSPRGMVVETVTLAEAKAQLGPGFSIL 552
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BLAST of mRNA_S-dermatodea_contig9403.17441.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.870e-39
Identity = 87/142 (61.27%), Postives = 103/142 (72.54%), Query Frame = 1 
Query:    1 VDDSDPAEELTEAASKRKEVVGKFNRHARLVMQPPDGAGGSV---RRPALVDNAAMATDLPELRQQGTATQEKLEIAHKNRYRGGGASNGS-------------GATSAGSQPRPQSPR--VIGAVSLAEAQAELGPGFSII 372
            VDDSDP EEL+EAA+KRKEVVGKFNRHARLVMQP           RRPALVD+AA ATD+PELR +    ++KL+IAHKNRYRGGG +NG+             GA SAGS  RPQSPR  ++  V+LAEA+A+LGPGFSI+
Sbjct:  341 VDDSDPTEELSEAANKRKEVVGKFNRHARLVMQPXXXXXXXXVTGRRPALVDSAASATDMPELRLREEVARDKLDIAHKNRYRGGGGTNGADSXXXXXXXXXXXGAVSAGSLSRPQSPRGMLVETVTLAEAKAQLGPGFSIL 482
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9403.17441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFT0_ECTSI1.190e-3962.68TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE1.870e-3961.27BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9403contigS-dermatodea_contig9403:2011..5639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3.7e-34
Seed eggNOG ortholog2880.D8LFT0
KEGG koko:K03141
KEGG Pathwayko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG ModuleM00290
GOsGO:0000428,GO:0000439,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006351,GO:0006355,GO:0006357,GO:0006360,GO:0006366,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsKOG2074@1,KOG2074@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9403.17441.1prot_S-dermatodea_contig9403.17441.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9403 2011..5638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925405.9248004-CDS-S-dermatodea_contig9403:2010..20961622925405.9248004-CDS-S-dermatodea_contig9403:2010..2096Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9403 2011..2096 +
1694079911.8532782-CDS-S-dermatodea_contig9403:2010..20961694079911.8532782-CDS-S-dermatodea_contig9403:2010..2096Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9403 2011..2096 +
1622925405.938465-CDS-S-dermatodea_contig9403:3644..37681622925405.938465-CDS-S-dermatodea_contig9403:3644..3768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9403 3645..3768 +
1694079911.869107-CDS-S-dermatodea_contig9403:3644..37681694079911.869107-CDS-S-dermatodea_contig9403:3644..3768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9403 3645..3768 +
1622925405.9568796-CDS-S-dermatodea_contig9403:5476..56381622925405.9568796-CDS-S-dermatodea_contig9403:5476..5638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9403 5477..5638 +
1694079911.8864706-CDS-S-dermatodea_contig9403:5476..56381694079911.8864706-CDS-S-dermatodea_contig9403:5476..5638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9403 5477..5638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9403.17441.1

>prot_S-dermatodea_contig9403.17441.1 ID=prot_S-dermatodea_contig9403.17441.1|Name=mRNA_S-dermatodea_contig9403.17441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
VDDSDPAEELTEAASKRKEVVGKFNRHARLVMQPPDGAGGSVRRPALVDN
AAMATDLPELRQQGTATQEKLEIAHKNRYRGGGASNGSGATSAGSQPRPQ
SPRVIGAVSLAEAQAELGPGFSII
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mRNA from alignment at S-dermatodea_contig9403:2011..5639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9403.17441.1 ID=mRNA_S-dermatodea_contig9403.17441.1|Name=mRNA_S-dermatodea_contig9403.17441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3629bp|location=Sequence derived from alignment at S-dermatodea_contig9403:2011..5639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGACGACAGCGATCCCGCCGAGGAGCTTACGGAGGCCGCGAGCAAGCG
AAAAGAAGTCGTGGGAAAATTCAATCGACACGCGAGGTAACCTTAAAAAC
TGACTCTTGTGCGGGTACTCGGTTCTGGGTAACCTTCCCGGTTCCCCGAT
TGACACGTACGTACTGTAGTGCCTGACCAACTTGAGGTACCCGTTGGGCT
ACGTCAGGCCTGACCTTGAAGTTCATGCTGTGCCGCGTCATGTCACACCC
CGAATGGGCGCCCCCCTGGACCAGTCTGTCCTGGAGCCCACTCGGGAAGC
TCCCCACTACAGTACCCACTACGTGTACCTCTCCGGGATCTATTAATACC
ACTCTCGAACCCTTGTCACCTCAGCTCCCCACGAGGGAACCACAGCTATG
TGTTTATTGGTGGACTGATTTTTAACCTTTTCAGTGATCAATCGGTGTGT
TGGCTGATTGGCTAATTGACGGACTCGGTGCCGTTGGCTGCGTTGATTGG
TTGGTTGGTTGGCTTGCTTCTTCGGTGGCTCGAGCATTCGTTCGATTAGA
GTTGGGTATTTTTCTTGGTAATTGTCATATTAATAACACTAATAATACTG
TCCAACGATGGCACGGCGGCACGATACGTTTTTAGGGGTGTATATTTTGC
TTCGTTCAGGGACATGACGTCGTATAGACCGATCGATCGATCGATCGCTG
TATGTGTCGCCTTGCCATCGCCCCCCCCCCCAGCCTGGTCCGGCGGAAAC
CCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCTATGGTCTAAC
GACGGTTTCCTCCGCGCGCTGGTGCAGGACTGACTATTTCTCTCTAACCA
CACCGGTGCCATAAATATTCAATGCACCCCCCCCCCCCCCCCCCCACCAT
CTTTGGCAAAGTAGGAAGGAACGATTGGCCGTCGGCGATCGATCGATCCT
GTTGGGACAATTCTCCTTCCTCCCGAGGACGCATGGTCAATGACCTAACT
TATAAGGCAGGCAACAATTTAGAACGCCCCCCCCCCCCCTCCCCCTTCCC
CATCCCCCACCCCTTCTCCCCTCTTCCACCCCCGCCCCGCCCCGCCCACC
GCCCCCCGTGGGCAAAACGGTCGGCACTGCATGTAATAGCCCTGCCACAT
ATACTGTAACCTTCAATGGCCATACTATTAATAGTTCAAGGAAAAGCGGC
GCAGAGATAACGGCATTCCGCTCTCAACATGCTAGTGGTACTGCAGTGCG
TGTGTGCGTGCGTGTGTGCGTGCGTGTGTGCGTGTTTGTTGTTGTTGTGT
GTGTCTGTCTGGCCTGGACCCTAAGGTAGCGTCAACAAGTCAGTCCTCTT
CTCCAATGCTCTGCTTCCCCCCCCCACGGACTCGGCGGCGCGGACGAGTA
ATGGTACAGTAAAATAAATGAGGGTGGGGTCTATCGTCTCTCCCTTGTTT
TTTTGCGTTTGTGTGTGTGTGTGTGTGTGTCGTAACGATTTTGCACATCA
AACGTATGCTATGCATACGCGTTATGTTTGTTTCGCTCTTGTTTAGTGTG
GACTCTCGTACTGTCAACGGTATTTGTACTTGTACACGTATGTGATATGT
GGGCGTTACGTTTGCTGTGCTCTTGCGCGCCCAGGTTAGTGATGCAGCCG
CCTGACGGAGCAGGGGGCTCCGTGCGTCGGCCGGCGTTGGTGGACAACGC
AGCGATGGCGACAGATCTGCCGGAACTCAGACAGCAGGGCACGGCCACCC
AGGAAAAGGTAAAGGGAGCAGTGACAAAATAACACGAGGAATTTTCGCGC
GACGGGCGTCGAAGTCGGCAAAAACAAAATCCTCGCGAGGCATCATCCAC
AAGCCCCCGCTCCCCCAATCCCCCCCCAAAAATGTTGCTTTCAGAAACAT
AGAGCGGGCGTTGGGGTACTGTCCCACCTATTCAAGAGGGGAGATGGTCC
AAGCTATAACACACCTATGGAGGCTTACTTTTTTTGTTACATATGATGCT
ATGGTGTCTTCATCATGTATGATGTATGATGTCATATGATTATGGTACAG
GCCAAGAGTCATTTGTCCCCCAACCCCCCTTTTTGTTGTTTCGCGCCGTG
TACATAATTACCTCGCCCGCGGTGCGTTTCGTTTGGCGTTTAGTCGTGGT
TGTTGGATGGGGGGGGGGGGGGGGGGGGGGGGGGGCGACAAACAGCGGGG
GGGTGCCCCCCGGGTTTTTGTGGGGTCGCCCCCCTTTGACGGAGAGGGGG
TGGCAGTAAATTTCGCTTTNNNNNNNNNNGGTGTGTTGGTTTGGTGGGGT
GGGGGGGTGGTGGGGGGGGGGGGGGGGGGGGGGGTGGTACGGTCGACAAA
CAGCCGTGGTGTGCCAACCGGATTGATCTCGGTTCGGCCCCCTATGACTG
GCAAGCGGTGTCAGTAGACTTCGACATTTGGTCGACAAATGCATATCCCG
CCATATCTCGCGTTTTTACTGGCCAAAGCTGACAGTCTAGTCTTTGGTCG
GAATGTGGTCGCGATGGTCCTTGAGAAAAATTGGCTCAAACGCGGCGCAG
CCGCGTTTGGGCACTGCAGGCCTCGGGTGAAGGTTAAAGTTCTGAGGGTG
GTATGGGTTAGGATGAGGGTTATAGGGTTAAAGAGTAAAGGGTTACAGGG
TAAGGGTTGAAGGGTTACAGTTACAGGGTAAAGGATGAAGGTTAAGGTTC
TGAGGGCGGTATGGGTTAGGGTTAGGGTTAGGGTAATGGTTGGGTCGACG
CCCGGGGCCCCGTGCCAGCGCTTTCAAAACACAATTTGTAAAAATATCAA
CTGTGTTTCATGAGTTCCTCGGAAATTTCTAAACGTGCCGACCACTTGGT
AAAGTCCCCTAAGCGGTGTTGTGTGCCACCGTGATGCTGCTGCTGTTGCC
GCGCAGTGTCTCTAAATGGATAGCTCGCGGTGGGGTTTCGTATTTTTTTC
CCGACGCGCTCGTTTTTTTTTCGCGTGCGGTAGGCTCCTTCCTTACGTGC
CAAAAAGTGTGGAATTTTGTCAAAGAAACTTTTGTTGCTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTACTCTCGTCTGTTCGGAAAAATGCA
TTACTTTTCCGCCCCGTGTGTTGTTTCTGATGAACGGCTGGTCGCTCTTC
GAGTAAAACGCCGTTCGATATTCCCACCTCGCACGGTATGCGTGGACAAG
TTGTATCGAAAACTCAATCGCGTTGTCGCGGATGGCGTTTCGCCCCGCAG
CGGAGCCCGACACCGACACCCTTCACGCGCTAAACTAAAACTCGCTTCTA
ACCTTACGAGAGCGACGCATGCATTCCACGCGCCGCGCACGCTCTGCGTC
ACAAACGATTTTGCCGCACTCACAAATCACCTGTGGCACGCCGTACCAGC
GTGCACTGACAAGAGTTTCTTCTTCCGCCTCAACTCGTGACGTCACCTCC
CCCACACCCCGCACAGCTCGAAATCGCCCATAAAAACCGCTATCGCGGAG
GCGGCGCGTCCAACGGTAGCGGCGCAACTAGTGCCGGTTCGCAACCGCGA
CCCCAATCCCCTCGAGTCATCGGAGCGGTTTCGCTTGCCGAGGCTCAGGC
GGAGCTTGGTCCCGGGTTTTCGATCATCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9403:2011..5639+

>mRNA_S-dermatodea_contig9403.17441.1 ID=mRNA_S-dermatodea_contig9403.17441.1|Name=mRNA_S-dermatodea_contig9403.17441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig9403:2011..5639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGACGACAGCGATCCCGCCGAGGAGCTTACGGAGGCCGCGAGCAAGCG
AAAAGAAGTCGTGGGAAAATTCAATCGACACGCGAGGTGGACGACAGCGA
TCCCGCCGAGGAGCTTACGGAGGCCGCGAGCAAGCGAAAAGAAGTCGTGG
GAAAATTCAATCGACACGCGAGGTTAGTGATGCAGCCGCCTGACGGAGCA
GGGGGCTCCGTGCGTCGGCCGGCGTTGGTGGACAACGCAGCGATGGCGAC
AGATCTGCCGGAACTCAGACAGCAGGGCACGGCCACCCAGGAAAAGGTTA
GTGATGCAGCCGCCTGACGGAGCAGGGGGCTCCGTGCGTCGGCCGGCGTT
GGTGGACAACGCAGCGATGGCGACAGATCTGCCGGAACTCAGACAGCAGG
GCACGGCCACCCAGGAAAAGCTCGAAATCGCCCATAAAAACCGCTATCGC
GGAGGCGGCGCGTCCAACGGTAGCGGCGCAACTAGTGCCGGTTCGCAACC
GCGACCCCAATCCCCTCGAGTCATCGGAGCGGTTTCGCTTGCCGAGGCTC
AGGCGGAGCTTGGTCCCGGGTTTTCGATCATCCTCGAAATCGCCCATAAA
AACCGCTATCGCGGAGGCGGCGCGTCCAACGGTAGCGGCGCAACTAGTGC
CGGTTCGCAACCGCGACCCCAATCCCCTCGAGTCATCGGAGCGGTTTCGC
TTGCCGAGGCTCAGGCGGAGCTTGGTCCCGGGTTTTCGATCATC
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