prot_S-dermatodea_contig12848.1737.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12848.1737.1
Unique Nameprot_S-dermatodea_contig12848.1737.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length127
Homology
BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.590e-7
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:   53 PFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIFRW 102
            P + T+    F GML+RL+FA TMGL A++   LLWV SLPWVAW I  W
Sbjct: 1364 PITYTYGWHTFDGMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCW 1413          
BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.680e-6
Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 0
Query:   53 PFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIFRW---RVPADADQDAAPQGYARSLAGTLR 126
            P + T+    F G L+RL F LTMGL A++   LLWV SLPWVAW +  W       + D D   +  A    G LR
Sbjct:  191 PITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETNAPVKRGKLR 267          
BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.890e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 0
Query:   44 TKGNDERRY--PFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIFR 101
            T+G  + R   PFS TH  +  +G L+RL FA T G+ A+    +LW+ S+PWVAW + R
Sbjct: 1365 TRGRSQARMLKPFSTTHQWKTLEGGLQRLEFAFTFGVAAVGLSTILWIVSVPWVAWCLHR 1424          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE9.590e-756.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FNX2_ECTSI5.680e-641.56Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH99_ECTSI2.890e-543.33Ankyrin Repeat Transient Receptor Potential Channe... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..127
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..69
NoneNo IPR availableTMHMMTMhelixcoord: 70..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12848contigS-dermatodea_contig12848:2499..4768 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12848.1737.1mRNA_S-dermatodea_contig12848.1737.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12848 2498..4768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12848.1737.1 ID=prot_S-dermatodea_contig12848.1737.1|Name=mRNA_S-dermatodea_contig12848.1737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MSGSSSSEVDIRAPSAERAESEAETDRDGGMNVEVETPSVDTKTKGNDER
RYPFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIF
RWRVPADADQDAAPQGYARSLAGTLRN
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