mRNA_S-dermatodea_contig12848.1737.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12848.1737.1
Unique NamemRNA_S-dermatodea_contig12848.1737.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.590e-7
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:  158 PFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIFRW 307
            P + T+    F GML+RL+FA TMGL A++   LLWV SLPWVAW I  W
Sbjct: 1364 PITYTYGWHTFDGMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCW 1413
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BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.680e-6
Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 2 
Query:  158 PFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIFRW---RVPADADQDAAPQGYARSLAGTLR 379
            P + T+    F G L+RL F LTMGL A++   LLWV SLPWVAW +  W       + D D   +  A    G LR
Sbjct:  191 PITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETNAPVKRGKLR 267
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BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.890e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:  131 TKGNDERRY--PFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIFR 304
            T+G  + R   PFS TH  +  +G L+RL FA T G+ A+    +LW+ S+PWVAW + R
Sbjct: 1365 TRGRSQARMLKPFSTTHQWKTLEGGLQRLEFAFTFGVAAVGLSTILWIVSVPWVAWCLHR 1424
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12848.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE9.590e-756.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FNX2_ECTSI5.680e-641.56Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH99_ECTSI2.890e-543.33Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12848contigS-dermatodea_contig12848:2498..4768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_001300.1
Hectar predicted targeting categorysignal anchor
Exons2
Model size382
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12848.1737.1prot_S-dermatodea_contig12848.1737.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12848 2499..4768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.4694376-UTR-S-dermatodea_contig12848:2497..24981622924264.4694376-UTR-S-dermatodea_contig12848:2497..2498Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12848 2498..2498 +
1694079135.4732454-UTR-S-dermatodea_contig12848:2497..24981694079135.4732454-UTR-S-dermatodea_contig12848:2497..2498Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12848 2498..2498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.478761-CDS-S-dermatodea_contig12848:2498..28161622924264.478761-CDS-S-dermatodea_contig12848:2498..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12848 2499..2816 +
1694079135.4840658-CDS-S-dermatodea_contig12848:2498..28161694079135.4840658-CDS-S-dermatodea_contig12848:2498..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12848 2499..2816 +
1622924264.4891825-CDS-S-dermatodea_contig12848:4705..47681622924264.4891825-CDS-S-dermatodea_contig12848:4705..4768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12848 4706..4768 +
1694079135.4922917-CDS-S-dermatodea_contig12848:4705..47681694079135.4922917-CDS-S-dermatodea_contig12848:4705..4768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12848 4706..4768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12848.1737.1

>prot_S-dermatodea_contig12848.1737.1 ID=prot_S-dermatodea_contig12848.1737.1|Name=mRNA_S-dermatodea_contig12848.1737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MSGSSSSEVDIRAPSAERAESEAETDRDGGMNVEVETPSVDTKTKGNDER
RYPFSETHAARAFKGMLRRLVFALTMGLFALSAFVLLWVASLPWVAWSIF
RWRVPADADQDAAPQGYARSLAGTLRN
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mRNA from alignment at S-dermatodea_contig12848:2498..4768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12848.1737.1 ID=mRNA_S-dermatodea_contig12848.1737.1|Name=mRNA_S-dermatodea_contig12848.1737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2271bp|location=Sequence derived from alignment at S-dermatodea_contig12848:2498..4768+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAGCGGCTCTTCTTCATCTGAGGTGGACATACGGGCTCCCTCTGCCG
AAAGGGCCGAGAGCGAGGCTGAAACAGACCGCGACGGGGGCATGAACGTC
GAGGTGGAGACGCCGAGCGTGGACACGAAGACCAAGGGGAACGATGAACG
ACGTTATCCATTCTCGGAGACTCACGCCGCTCGAGCCTTCAAGGGGATGC
TGCGGAGGCTGGTGTTTGCTTTGACCATGGGCCTCTTCGCCCTGTCGGCT
TTCGTGCTGCTGTGGGTGGCGTCCCTTCCGTGGGTGGCATGGAGCATATT
CCGGTGGAGGGTTCCCGCGGTAAGACAACCCGCATCGCTCAAGAATAAGG
TGTTGTTCCCGTGCATCGTGTCCAGTCGTGAAATATATTGGATCGAACAC
CCCTCTTGTTGGTAGCATGTGAAGCATTTGTGTGGGCATTGTACGCACAC
TATCATAGGCGGTTGGAAGTCGCGAATGCAGCACACTGCCGACTTGGATC
GAATTCGAGAGAACGCCCCATTCCCAGCTACCTGTCAATCGTTTCATGCC
ACGGGAGGGTACAGTTGGCCGATTTTCAGTTACAAGACGTGGATACGAAC
CATGACACCGTGTCCGCTGCGGTAGTAAGAGCTTTGAATCCGACCGAGTC
GCTGCCGTAGACGTATCGAGAAAGGCCAGACAACAAAAAAAGTCGGGGGG
GGGGGGGGGGTGACGGTGTTTCATCGCTTCGAACTTGGAGACGTTTCGCG
ACCAAAATATTACCCCGTGTACCTCATGCAGCGCTGGAAGAATTTGCTTA
AGTTTTTCGTCTGGTCCTTCCCTGTGGAGCTCGGCCGTGCGTTTCGTTTC
TTACTGGCATGTACCAAAGCCCGTTGCCGCTTGTGAGTCCTCGCCCTGTC
TAACCCGCGCATAATGTCGCGTCATAGGGCAGGAACGGGACATTGTAGAG
ACGCACGAATATGACGTTTATGGGTTCCCTCCTGGGGCGCGAGTCGCTGA
TCGAGGCAACACAATTTCATCTTTACGCAAGCAAAAGCCAGTGATTGATT
GATCGATTGACTGACTGATTGGTTGATTACCACACTTACAACCGGGTAGC
CCGCCAATGGTTGCCGATCCCGCTCGTGGTCAGATTAAAATTGGAGAAAA
TCGAAAATAACCTAACCCAAGGAATTTTCGTATATTCTACATGAGAAAGA
AGTAACACATCGCTCGGAATTAGAGAGGACGAAACATGGAAATTGGGTCT
ACCCCGTGTAAGCTGTCTGCTACTCCTCGCGCGTTGCCACTCAAGTAGCC
CGTGTGCCTTGTTTTGCTCCGAGAATAGGTTCAACTCTCGGAGATGGTCG
CTCTGTGCGGGAAAGTTCGCCCGAATGTTGGCATGGGATACGATACTCGC
TTTGTGTCATATCGTCATAAAACGGAGGCCCATAGTAATCAGGACAACAT
CACGCGACCATGAATATCCTACCATTCCGACCAAGAATACCGAAAGTACA
ACAAAAGTATCATGAAGAAAAAAAGCACGATGTCTGGCCTTATACAACAA
CATCGACCGTAAAATCTCGAAAATTCCAGCCTATTTTTGAGACTCGTGGC
AAATTAGGACCTGTTAACAAATGGTCCTCCGTGATAGCGTAGATTCATGT
CGTCCTTCCTTTGATACCTAGTTTTATCAACCATCACGGCGGATCGGTGG
AAGTCTAAATTATTTTGAGCGAACTGACTTTTCGGTGGAAGGGTTGTGAA
CTTGAGCTCACGCATGGTGCGAGAAGCGCAAGCGTTCACACCAAGAAAGG
CGCCCGAAACGCCCTCACAGTAATACTTTTGTTTTTACGTAACGGTTGCC
AGACTCGATAATTACATCGCAGGCGCGATTAGCCTAATGCGTTTTTTCTC
TTAGTAGGCCCACGACCCGAGGTATATCCCTTCTGTACTATACATAGTAT
AGGTAATTCCGTAGGGTTTTTCGATATCTCGATGTCTCATCTGACCACGA
GCGGCGGGATCGGCAACCATTGGTGGGCCGGTTGGCTGTAAGTGCGATAA
TCAACAAATCAATCAATCAATCAATCAAATCAAACCCAATCAATCAAAAT
CAAACCTCAACCACGTACTATAATAGCGCTGATCCCCGCTATTCATCACC
ACCCTCCGGCCACCACCCCCCCCCCCCCCCGGTCTTGGCCATGCGCCCAC
ACGTAAAGGACGCAGATCAGGACGCGGCGCCGCAGGGATACGCGCGTTCG
CTCGCAGGCACGCTGCGCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12848:2498..4768+

>mRNA_S-dermatodea_contig12848.1737.1 ID=mRNA_S-dermatodea_contig12848.1737.1|Name=mRNA_S-dermatodea_contig12848.1737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig12848:2498..4768+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCGGCTCTTCTTCATCTGAGGTGGACATACGGGCTCCCTCTGCCGA
AAGGGCCGAGAGCGAGGCTGAAACAGACCGCGACGGGGGCATGAACGTCG
AGGTGGAGACGCCGAGCGTGGACACGAAGACCAAGGGGAACGATGAACGA
CGTTATCCATTCTCGGAGACTCACGCCGCTCGAGCCTTCAAGGGGATGCT
GCGGAGGCTGGTGTTTGCTTTGACCATGGGCCTCTTCGCCCTGTCGGCTT
TCGTGCTGCTGTGGGTGGCGTCCCTTCCGTGGGTGGCATGGAGCATATTC
CGGTGGAGGGTTCCCGCGATGAGCGGCTCTTCTTCATCTGAGGTGGACAT
ACGGGCTCCCTCTGCCGAAAGGGCCGAGAGCGAGGCTGAAACAGACCGCG
ACGGGGGCATGAACGTCGAGGTGGAGACGCCGAGCGTGGACACGAAGACC
AAGGGGAACGATGAACGACGTTATCCATTCTCGGAGACTCACGCCGCTCG
AGCCTTCAAGGGGATGCTGCGGAGGCTGGTGTTTGCTTTGACCATGGGCC
TCTTCGCCCTGTCGGCTTTCGTGCTGCTGTGGGTGGCGTCCCTTCCGTGG
GTGGCATGGAGCATATTCCGGTGGAGGGTTCCCGCGGACGCAGATCAGGA
CGCGGCGCCGCAGGGATACGCGCGTTCGCTCGCAGGCACGCTGCGCAACG
ACGCAGATCAGGACGCGGCGCCGCAGGGATACGCGCGTTCGCTCGCAGGC
ACGCTGCGCAAC
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