prot_S-dermatodea_contig9139.17212.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9139.17212.1
Unique Nameprot_S-dermatodea_contig9139.17212.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length301
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9139.17212.1 vs. uniprot
Match: D7FHW4_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.830e-17
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:  246 LEARRNCTATVQSYAPLVEALSRELRWQEAIMLFQEMENRKITPTVQSYTAVVRA 300
            L+ARRNC+ T+ SY PLV+AL+RELRWQEAIMLFQEME+RKI PTVQ YT+VVRA
Sbjct:  531 LQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRA 585
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9139.17212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHW4_ECTSI5.830e-1778.18PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 258..290
e-value: 3.7E-5
score: 21.6
coord: 82..114
e-value: 8.3E-6
score: 23.7
coord: 46..80
e-value: 3.1E-7
score: 28.2
coord: 187..220
e-value: 4.3E-5
score: 21.4
coord: 11..45
e-value: 1.0E-5
score: 23.3
coord: 116..149
e-value: 6.0E-7
score: 27.2
coord: 151..185
e-value: 9.4E-5
score: 20.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 222..243
e-value: 0.039
score: 14.2
coord: 262..286
e-value: 0.016
score: 15.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..52
e-value: 2.0E-10
score: 40.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..249
score: 8.232
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..289
score: 10.194
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 10.841
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.334
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..148
score: 12.441
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 10.567
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..218
score: 10.106
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 91..212
e-value: 6.3E-13
score: 48.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..90
e-value: 6.4E-25
score: 89.5
coord: 196..300
e-value: 9.1E-24
score: 85.8
coord: 91..195
e-value: 2.1E-36
score: 127.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 113..299
coord: 5..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9139contigS-dermatodea_contig9139:653..8511 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9139.17212.1mRNA_S-dermatodea_contig9139.17212.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9139 653..8511 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9139.17212.1 ID=prot_S-dermatodea_contig9139.17212.1|Name=mRNA_S-dermatodea_contig9139.17212.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=301bp
MDANGVEKDVVTISAAISACADKGQWAQAEKLLQDMLEAGLTPNVITYTS
LMVVLRRGDQFEKAIGILDLMRSKGVKPNVRSYSVAIAACADAKEWQRAL
GLMKEMEREGVPPNNVTYNTAIRACGDSGALDEALALLDEMEQKGVKLTV
VTYGSAVSACQRKGDWQTALELLATMRRDQIEPNEIVYGGIIKACCAGGQ
ANKALELLFRMIDLRLRPNTQCFNVVIKALADSGQLKEAMQLLAALEARR
NCTATVQSYAPLVEALSRELRWQEAIMLFQEMENRKITPTVQSYTAVVRA
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf