mRNA_S-dermatodea_contig9123.17202.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9123.17202.1
Unique NamemRNA_S-dermatodea_contig9123.17202.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.950e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRL 147
            SLFRKYAEPGYVQIYTKGEGLVEFNSLDEM+HVI KLD+TKF G Y+RL
Sbjct:  162 SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRL 210
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BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: K3WQ99_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ99_GLOUD)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   10 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRLKA 153
            R   E  Y  I + G  L EF S D+M++ I KLDDT+FRG+YVR+ A
Sbjct:   77 RSGGEVTYCNIESDGTALAEFQSKDDMENAIKKLDDTEFRGNYVRITA 124
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BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: A0A0P1ACL5_PLAHL (Serine arginine-rich splicing factor 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACL5_PLAHL)

HSP 1 Score: 48.9 bits (115), Expect = 2.940e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   10 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRL 147
            R   E  Y  I T G  + EF + D+M+  I KLDDT+FRGSYVR+
Sbjct:  234 RTGGEVTYCNIETDGSAIAEFQTKDDMEDAIKKLDDTEFRGSYVRV 279
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BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.110e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   10 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRL 147
            R   E  Y  I   G  + EF S ++MD+ I KLDDT+FRG+YVRL
Sbjct:  140 RTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRL 185
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BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 47.4 bits (111), Expect = 9.450e-5
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:   10 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRLKA 153
            R   E  Y  I   G  + EF S  ++D  I KLDDT+FRGSYVR+ A
Sbjct:  146 RTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAA 193
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMT6_ECTSI5.950e-2187.76RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3WQ99_GLOUD4.330e-650.00RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A0P1ACL5_PLAHL2.940e-550.00Serine arginine-rich splicing factor 1-like n=1 Ta... [more]
A0A5D6YQ52_9STRA5.110e-550.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GHB6_PHYRM9.450e-547.92Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9123contigS-dermatodea_contig9123:8458..8616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3e-17
Seed eggNOG ortholog2880.D7FMT6
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-21_000220.1
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.6259718-CDS-S-dermatodea_contig9123:8457..86161622925388.6259718-CDS-S-dermatodea_contig9123:8457..8616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9123 8458..8616 -
1694079900.1197553-CDS-S-dermatodea_contig9123:8457..86161694079900.1197553-CDS-S-dermatodea_contig9123:8457..8616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9123 8458..8616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9123.17202.1prot_S-dermatodea_contig9123.17202.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9123 8458..8616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9123.17202.1

>prot_S-dermatodea_contig9123.17202.1 ID=prot_S-dermatodea_contig9123.17202.1|Name=mRNA_S-dermatodea_contig9123.17202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRLK
AS*
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mRNA from alignment at S-dermatodea_contig9123:8458..8616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9123.17202.1 ID=mRNA_S-dermatodea_contig9123.17202.1|Name=mRNA_S-dermatodea_contig9123.17202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig9123:8458..8616- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTGTTCCGCAAGTACGCCGAGCCGGGCTACGTGCAGATCTACACGAA
GGGCGAGGGGCTGGTGGAGTTCAACTCACTGGATGAGATGGACCACGTGA
TCACCAAGCTCGACGACACCAAGTTCCGCGGGTCTTACGTTCGTCTGAAG
GCAAGCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9123:8458..8616-

>mRNA_S-dermatodea_contig9123.17202.1 ID=mRNA_S-dermatodea_contig9123.17202.1|Name=mRNA_S-dermatodea_contig9123.17202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig9123:8458..8616- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTGTTCCGCAAGTACGCCGAGCCGGGCTACGTGCAGATCTACACGAA
GGGCGAGGGGCTGGTGGAGTTCAACTCACTGGATGAGATGGACCACGTGA
TCACCAAGCTCGACGACACCAAGTTCCGCGGGTCTTACGTTCGTCTGAAG
GCAAGCTAAAGCCTGTTCCGCAAGTACGCCGAGCCGGGCTACGTGCAGAT
CTACACGAAGGGCGAGGGGCTGGTGGAGTTCAACTCACTGGATGAGATGG
ACCACGTGATCACCAAGCTCGACGACACCAAGTTCCGCGGGTCTTACGTT
CGTCTGAAGGCAAGCTAA
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