prot_S-dermatodea_contig9123.17202.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9123.17202.1
Unique Nameprot_S-dermatodea_contig9123.17202.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length53
Homology
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.950e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    1 SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRL 49
            SLFRKYAEPGYVQIYTKGEGLVEFNSLDEM+HVI KLD+TKF G Y+RL
Sbjct:  162 SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRL 210          
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: K3WQ99_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ99_GLOUD)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0
Query:    4 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRLKA 51
            R   E  Y  I + G  L EF S D+M++ I KLDDT+FRG+YVR+ A
Sbjct:   77 RSGGEVTYCNIESDGTALAEFQSKDDMENAIKKLDDTEFRGNYVRITA 124          
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: A0A0P1ACL5_PLAHL (Serine arginine-rich splicing factor 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACL5_PLAHL)

HSP 1 Score: 48.9 bits (115), Expect = 2.940e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0
Query:    4 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRL 49
            R   E  Y  I T G  + EF + D+M+  I KLDDT+FRGSYVR+
Sbjct:  234 RTGGEVTYCNIETDGSAIAEFQTKDDMEDAIKKLDDTEFRGSYVRV 279          
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.110e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0
Query:    4 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRL 49
            R   E  Y  I   G  + EF S ++MD+ I KLDDT+FRG+YVRL
Sbjct:  140 RTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRL 185          
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 47.4 bits (111), Expect = 9.450e-5
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 0
Query:    4 RKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRLKA 51
            R   E  Y  I   G  + EF S  ++D  I KLDDT+FRGSYVR+ A
Sbjct:  146 RTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAA 193          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9123.17202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMT6_ECTSI5.950e-2187.76RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3WQ99_GLOUD4.330e-650.00RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A0P1ACL5_PLAHL2.940e-550.00Serine arginine-rich splicing factor 1-like n=1 Ta... [more]
A0A5D6YQ52_9STRA5.110e-550.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GHB6_PHYRM9.450e-547.92Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..47
e-value: 1.4E-5
score: 24.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..52
score: 8.603
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..51
e-value: 5.5E-9
score: 37.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9123contigS-dermatodea_contig9123:8458..8616 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9123.17202.1mRNA_S-dermatodea_contig9123.17202.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9123 8458..8616 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9123.17202.1 ID=prot_S-dermatodea_contig9123.17202.1|Name=mRNA_S-dermatodea_contig9123.17202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMDHVITKLDDTKFRGSYVRLK
AS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf