mRNA_S-dermatodea_contig12803.1717.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 297 bits (760), Expect = 2.760e-87 Identity = 152/300 (50.67%), Postives = 206/300 (68.67%), Query Frame = 1
Query: 136 RGGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERALNRI-RELDMEGEVLEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEAISNDLVDDIADLARLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
RGG+ KAA+ L++P PRN +TL LR KHP E + +I++A A R+ R + VE+PF + + I++ NP + GP GLRFS LQ +++ +L + IA L +++ + LP FW LH+SA+LSA+G+K RP+A GD+ RR +G C QY LAE+FEP GQYGVAV GG E++A RA LA Q+G +L+YD NAFNSM R ILP+LA+++PP+ YATN+YAR+PPKLLY G AV+ SA GVQQGCN+G L YSAGL+ L++ +A+PPV G Q+ AFIDD
Sbjct: 1092 RGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGM-AVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDD 1390
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 266 bits (681), Expect = 3.340e-83 Identity = 147/304 (48.36%), Postives = 199/304 (65.46%), Query Frame = 1
Query: 139 GGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERAL----NRIRELDMEGEVLEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEA-ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
GGI KAA+AL+SP P+PRN TL LR HP ED I+ A + ++ +RI ++ V E ++PFE I+ +KKANP SA GP GLRFS+LQ +S+ + +AD + ++ Y + LP FW LH+SA+LSALGEK RP+A G VLRR + +FC QY +A FE + Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NSM R ILP++A P + Y N+YAR KLL+ + DG+ VV S RGVQQGCN+G G+ GL+ +MK+ PPVPGV++ ++DD
Sbjct: 53 GGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDS-VAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDD 355
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 266 bits (681), Expect = 1.270e-80 Identity = 146/304 (48.03%), Postives = 199/304 (65.46%), Query Frame = 1
Query: 139 GGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERAL----NRIRELDMEGEVLEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEA-ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
GGI KAA+AL+SP P+PRN TL LR HP ED I+ A + ++ +RI+ ++ V E ++PFE I+ +KKANP SA GP GLRFS+LQ +S+ + +AD + ++ Y + LP FW LH+SA+LSALGEK RP+A G VLRR + +FC QY +A FE + Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NSM R ILP++A P + Y N+YAR KLL+ + DG+ VV S RGVQQGCN+G G+ GL+ +MK+ PPVPG ++ ++DD
Sbjct: 53 GGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDS-VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDD 355
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 268 bits (685), Expect = 2.750e-79 Identity = 147/304 (48.36%), Postives = 200/304 (65.79%), Query Frame = 1
Query: 139 GGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERAL----NRIRELDMEGEVLEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEA-ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
GGI KAA+AL+SP P+PRN TL LR HP ED I+ A + ++ +RI+ ++ V E ++PFE I+ +KKANP SA GP GLRFS+LQ +S+ + +AD + ++ Y + LP FW LH+SA+LSALGEK RP+A G VLRR + +FC QY +A FE + Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NSM R ILP++A P + Y N+YAR KLL+ + DG+ VV S RGVQQGCN+G G+ GL+ +MK+ PPVPGV++ ++DD
Sbjct: 53 GGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDS-VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDD 355
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 269 bits (688), Expect = 1.890e-78 Identity = 147/304 (48.36%), Postives = 200/304 (65.79%), Query Frame = 1
Query: 139 GGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERAL----NRIRELDMEGEVLEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEA-ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
GGI KAA+AL+SP P+PRN TL LR HP ED I+ A + ++ +RI+ ++ V E ++PFE I+ +KKANP SA GP GLRFS+LQ +S+ + +AD + ++ Y + LP FW LH+SA+LSALGEK RP+A G VLRR + +FC QY +A FE + Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NSM R ILP++A P + Y N+YAR KLL+ + DG+ VV S RGVQQGCN+G G+ GL+ +MK+ PPVPGV++ ++DD
Sbjct: 53 GGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDS-VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDD 355
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.490e-54 Identity = 98/203 (48.28%), Postives = 135/203 (66.50%), Query Frame = 1
Query: 427 ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
+S+ + +AD + ++ Y + LP FW LH+SA+LSALGEK RP+A G VLRR + +FC QY +A FE + Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NSM R ILP++A P + Y N+YAR KLL+ + DG+ VV S RGVQQGCN+G G+ GL+ +MK+ PPVPG ++ ++DD
Sbjct: 1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDD 203
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 193 bits (491), Expect = 2.130e-51 Identity = 97/203 (47.78%), Postives = 135/203 (66.50%), Query Frame = 1
Query: 427 ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
+S+ + +AD + ++ Y + LP W LH+SA+LSALGEK RP+A G VLRR + +F QY +A FE + Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NSM R ILP++A + P + Y N+YAR KLL+ + DG+ VV S RGVQQGCN+G G+ GL+ +MK+ PPVPGV++ ++DD
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDD 203
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 165 bits (418), Expect = 8.890e-44 Identity = 106/306 (34.64%), Postives = 160/306 (52.29%), Query Frame = 1
Query: 139 GGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERALNRIRELDMEGEV--LEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEAISNDLVDDIADLA------RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
GG+ AA AL++ +P+P N +T L+AK P ED ++ +A A+ R + EG E F+ ++ I + + NS AG G RFSHL+ ++N + + A RL+ N+ PP FW L +SL ALGEK RPV G RR + A ++ +L E F + Q+GVAV GGVE +A+ A L Q G+ ++ D +NAFN+ R I+ A+ VP + Y Y P K +Y + G ++ GVQQG +G + L+P++ K +A GV + A++DD
Sbjct: 24 GGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINRRSSNSGAGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDD 329
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 151 bits (382), Expect = 2.580e-41 Identity = 80/166 (48.19%), Postives = 110/166 (66.27%), Query Frame = 1
Query: 427 ISNDLVDDIADLA-RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQ 921
+S+D + +AD + ++ Y + LP LFW +SASLSALGEK RP+A G VLRR + +FC QY + +A+ FE S Q+G V GGVEI+A A L+ Q+G TILS+DG NA+NS+ R IL ++A P + Y N+YAR KLL+ + DG+ +V S R VQQ
Sbjct: 1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 164 bits (414), Expect = 3.680e-41 Identity = 106/306 (34.64%), Postives = 159/306 (51.96%), Query Frame = 1
Query: 139 GGICKAAAALVSPEPAPRNQQTLNLLRAKHPPEDRAKISKASERALNRIRELDMEGEV--LEVEQPFESSMIRLAIKKANPNSAAGPVGLRFSHLQEAISNDLVDDIADLA------RLVYSENSLPPLFWALHSSASLSALGEKARPVACGDVLRRTMGATFCSQYNEQLAEYFEPSGQYGVAVRGGVEIMALRAMLAFQEGYTILSYDGANAFNSMFRRRILPSLAEIVPPVTTYATNVYARDPPKLLYAVADGTTAVVDSARGVQQGCNIGSLGYSAGLMPLMKKCKASPPVPGVQMCAFIDD 1032
GG+ AA AL++ +P+P N +T L+AK P ED ++ +A A+ R + EG E F+ ++ I + NS AG G RFSHL+ ++ + + A RL+ N+ PP FW L +SL ALGEK RPV G RR + A ++ +L E F + Q+GVAV GGVE +A+ A L Q G+ ++ D +NAFN+ R I+ A+ VP + Y Y P K +YA+ G ++ GVQQG +G + L+P++ K +A GV + A++DD
Sbjct: 302 GGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDD 607 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12803.1717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12803.1717.1 >prot_S-dermatodea_contig12803.1717.1 ID=prot_S-dermatodea_contig12803.1717.1|Name=mRNA_S-dermatodea_contig12803.1717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=339bp MPWPRRRHHHPPTQRSPRPRPHAPRGPRTRADTTARRNGTRGGICKAAAAback to top mRNA from alignment at S-dermatodea_contig12803:2073..3713- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12803.1717.1 ID=mRNA_S-dermatodea_contig12803.1717.1|Name=mRNA_S-dermatodea_contig12803.1717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1641bp|location=Sequence derived from alignment at S-dermatodea_contig12803:2073..3713- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12803:2073..3713- >mRNA_S-dermatodea_contig12803.1717.1 ID=mRNA_S-dermatodea_contig12803.1717.1|Name=mRNA_S-dermatodea_contig12803.1717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at S-dermatodea_contig12803:2073..3713- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |