mRNA_S-dermatodea_contig128.1713.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig128.1713.1
Unique NamemRNA_S-dermatodea_contig128.1713.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 4.470e-119
Identity = 171/195 (87.69%), Postives = 184/195 (94.36%), Query Frame = 1 
Query:   10 QVHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSR 594
            QVHKRQEKN++LRHLRNV +E+TPGL+ADFVLGPK CAVFISLRYHLLYPHYLIQRIKELS HFTLRVLLCHVDVDDSE PLL+INKMAV NDFT +LAWSLQEA RYLETYKAYE KSADSIQEKVDDD+L KLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDA+A EL+LCPGLG+KKV+RI+EALHEPL R
Sbjct:   82 QVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPLVR 276
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.890e-81
Identity = 130/161 (80.75%), Postives = 141/161 (87.58%), Query Frame = 1 
Query:  154 YPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSR---TLRRKRSRPEG 627
            +PH  +Q   ELS HFTLRVLLCHVDVDDSE PLL+INKMAV NDFT +LAWSLQEA RYLETYKAYE KSADSIQEKVDDD+L KLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDA+A EL+LCPGLG+KKVARI+EALHEPL R   + R KR+R EG
Sbjct:    5 HPHIFMQ---ELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTEG 162
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE)

HSP 1 Score: 218 bits (555), Expect = 1.630e-67
Identity = 102/195 (52.31%), Postives = 145/195 (74.36%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRT 597
            V  RQ+ N +L+H+RNV +     ++ D++LG  +CA++ISLRYHLL+P Y+  RI+EL ++F LRV+LCH+DV+D  KPLL++ + A+L+D + +  WSL+E GRYLET K YE KSADSI+E++D DYL++L      +R VNK+DV+TL S FGSL  + DAS +ELA CPG+G++KV R+Y+  HEP  RT
Sbjct:   18 VSHRQKGNPLLKHIRNVRWTFA-DVVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPFRRT 211
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A835LMH1_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMH1_9MAGN)

HSP 1 Score: 219 bits (558), Expect = 7.150e-67
Identity = 103/196 (52.55%), Postives = 145/196 (73.98%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTL 600
            V  RQ+ N +L+H+RNV + +   ++ D++LG  +CA+++SLRYHLL+P YL  RIKEL ++F LRV+LCHVDV+D  KP+L++ K A+L+D T + AWSL+E GRYLET K YE K AD +Q ++D DYL++L      VR VNK+DV+TL SNFGSL  + D+S ++LA CPG+G+KKV R+Y+  HEP  R +
Sbjct:  103 VSHRQKGNPLLKHIRNVKW-LFADIICDYLLGQNSCALYLSLRYHLLHPDYLYYRIKELQKNFKLRVVLCHVDVEDVVKPILEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGSNFGSLSRIMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRRAV 297
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: UPI000CE1FCD7 (DNA excision repair protein ERCC-1-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1FCD7)

HSP 1 Score: 216 bits (551), Expect = 1.410e-66
Identity = 104/204 (50.98%), Postives = 147/204 (72.06%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTLRRKRSRPE 624
            V  RQ+ N +L+H+RNV +     ++ D++LG  +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDV+D  KPLL++ K A+L+D T + AWSL+E GRYLET K YE K AD IQ ++D DYL++L      VR VNK+DV+TL + FGSL  + DAS ++LA CPG+G++KV R+Y+  HEP  R +  + + PE
Sbjct:   47 VSHRQKGNPLLKHIRNVRWAFA-DIVCDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVAKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTTVRHVNKTDVVTLGTTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVASRPAVPE 249
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A2G3A240_CAPAN (DNA excision repair protein ERCC-1 n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3A240_CAPAN)

HSP 1 Score: 218 bits (555), Expect = 1.910e-66
Identity = 103/204 (50.49%), Postives = 148/204 (72.55%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTLRRKRSRPE 624
            V  RQ+ N +L+H+RNV +     ++ D++LGP  CA+++SLRYHLL+P YL  RI+EL ++F LR++LCHVDV+D  KPLL++ + ++L+D T +  WSL+E GRYLET K YE K AD IQ ++D DYL++L      +R VNK+DV+TL S FGSL  V DAS ++LA CPG+G++KV R+Y+A HEP  R + +++  PE
Sbjct:   99 VSNRQKGNPLLKHIRNVRWAFA-DIVCDYLLGPNTCALYLSLRYHLLHPDYLYFRIRELQKNFRLRIVLCHVDVEDVVKPLLEVTRTSLLHDCTLLCGWSLEECGRYLETVKVYENKPADLIQGQMDGDYLSRLNHALTAIRHVNKTDVVTLGSTFGSLSHVMDASMEDLARCPGIGERKVKRLYDAFHEPFKREVPKRQCIPE 301
[Close]
BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A3S4NRY1_9MAGN (DNA excision repair protein ERCC-1 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4NRY1_9MAGN)

HSP 1 Score: 218 bits (554), Expect = 2.000e-66
Identity = 104/196 (53.06%), Postives = 145/196 (73.98%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTL 600
            V  RQ+ N +L+H+RNV + +   +L D++LG  +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDV+D  KPLL++ + A+L+D T +  WSL+E GRYLET K YE K ADSIQE++D DYL++L      VR VNK+DV+TL S FGSL  + DAS ++LA CPG+G++KV R+Y+  HEP  R +
Sbjct:  107 VSHRQKGNPLLKHIRNVRW-MFADVLCDYLLGQGSCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADSIQERMDTDYLSRLTHALTAVRHVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFRRVV 301
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A022QX06_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QX06_ERYGU)

HSP 1 Score: 218 bits (554), Expect = 2.420e-66
Identity = 104/196 (53.06%), Postives = 145/196 (73.98%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTL 600
            V  RQ+ N +L+H+RNV +     ++ D++LG  +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDV+D  KPLL++ K A+L+D T + AWSL+E GRYLET K YE KSA+ IQ ++D DYL++L +    VR VNK+DV+TL S FGSL  + DAS D+LA CPG+G++KV R+Y+  HEP  R +
Sbjct:  103 VSNRQKGNPLLKHIRNVRWAFA-DIVCDYLLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKSAELIQGQMDMDYLSRLNNALTSVRHVNKTDVVTLGSTFGSLSNIMDASVDDLARCPGIGERKVKRLYDTFHEPFKRVV 297
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BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A5C7I906_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I906_9ROSI)

HSP 1 Score: 218 bits (555), Expect = 2.440e-66
Identity = 106/204 (51.96%), Postives = 147/204 (72.06%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTLRRKRSRPE 624
            V  RQ+ N +L+H+RNV +     ++ D++LG  +CA+++SLRYHLL+P YL  RI+EL ++F LRV+LCH+DVDD  KPLL++ K A+L+D T + AWSL+E GRYLET K YE K AD IQ ++D DYL++L      VRSVNK+DV+TL S FGSL  + DAS ++LA CPG+G++KV R+++  HEP  R +    S PE
Sbjct:  105 VSHRQKGNPLLKHIRNVRWAFA-DVVCDYMLGQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHIDVDDVVKPLLEVTKTAMLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDSDYLSRLTHSLTTVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLHDTFHEPFKRVVTSHPSVPE 307
[Close]
BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Match: A0A2J6KZK7_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KZK7_LACSA)

HSP 1 Score: 217 bits (552), Expect = 3.120e-66
Identity = 103/204 (50.49%), Postives = 149/204 (73.04%), Query Frame = 1 
Query:   13 VHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFILAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTLRRKRSRPE 624
            V  RQ+ N +L+H+RNV +     +++D+VLG ++CA+++S+RYHLL+P YL  RI+EL ++F LRV+LCH+DV+D  KPLL++ + A+L+D T +  WSL+E GRYLET K YE K AD IQ ++D DYL++L      VR VNK+DV+TL S FGSL  + DAS ++LA CPG+G++KV R+Y+  HEP  RT+ ++   PE
Sbjct:  112 VSHRQKGNPLLKHIRNVRWAFA-DVVSDYVLGQQSCALYLSIRYHLLHPDYLYFRIRELGKNFKLRVVLCHIDVEDVVKPLLEVTRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADFIQGQMDTDYLSRLSHALTSVRHVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRTVSKQHPPPE 314
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig128.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W2_9PHAE4.470e-11987.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P9_ECTSI2.890e-8180.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D1ZHX7_9ARAE1.630e-6752.31DNA excision repair protein ERCC-1 n=1 Tax=Anthuri... [more]
A0A835LMH1_9MAGN7.150e-6752.55Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
UPI000CE1FCD71.410e-6650.98DNA excision repair protein ERCC-1-like n=1 Tax=Qu... [more]
A0A2G3A240_CAPAN1.910e-6650.49DNA excision repair protein ERCC-1 n=4 Tax=Capsicu... [more]
A0A3S4NRY1_9MAGN2.000e-6653.06DNA excision repair protein ERCC-1 isoform X1 n=1 ... [more]
A0A022QX06_ERYGU2.420e-6653.06Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A5C7I906_9ROSI2.440e-6651.96Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A2J6KZK7_LACSA3.120e-6650.49Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig128contigS-dermatodea_contig128:24284..25509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.5
Seed ortholog evalue3.5e-64
Seed eggNOG ortholog2880.D7G4P9
Preferred nameERCC1
KEGG koko:K01230,ko:K03514,ko:K10849,ko:K10898,ko:K14850
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko01524,ko03018,ko03420,ko03460,ko04141,map00510,map00513,map01100,map01524,map03018,map03420,map03460,map04141
KEGG ModuleM00073,M00074,M00393,M00413
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000228,GO:0000280,GO:0000428,GO:0000710,GO:0000712,GO:0000720,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000733,GO:0000735,GO:0000736,GO:0000781,GO:0000784,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001302,GO:0001325,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006290,GO:0006293,GO:0006294,GO:0006295,GO:0006296,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006949,GO:0006950,GO:0006955,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007548,GO:0007568,GO:0007569,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009653,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010213,GO:0010224,GO:0010259,GO:0010332,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016591,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019724,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031334,GO:0031593,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033683,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035166,GO:0035264,GO:0035822,GO:0035825,GO:0035861,GO:0036297,GO:0040007,GO:0042113,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043240,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044798,GO:0045002,GO:0045132,GO:0045137,GO:0045165,GO:0045190,GO:0045321,GO:0045934,GO:0045935,GO:0046483,GO:0046546,GO:0046649,GO:0046661,GO:0046982,GO:0046983,GO:0048232,GO:0048256,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061458,GO:0061695,GO:0061819,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070522,GO:0070911,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090575,GO:0090656,GO:0090734,GO:0090737,GO:0097159,GO:0098687,GO:0098813,GO:0104004,GO:0140013,GO:0140030,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903046,GO:1904353,GO:1904354,GO:1904429,GO:1904431,GO:1904505,GO:1904506,GO:1905764,GO:1905765,GO:1990234,GO:1990391,GO:2001020,GO:2001021,GO:2001251,GO:2001252
EggNOG free text desc.meiotic mismatch repair
EggNOG OGsCOG5241@1,KOG2841@2759
EC2.1.1.287,2.7.7.19,3.2.1.113
COG Functional cat.L
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03019,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size639
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig128.1713.1prot_S-dermatodea_contig128.1713.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig128 24284..25509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924262.3966618-CDS-S-dermatodea_contig128:24283..244661622924262.3966618-CDS-S-dermatodea_contig128:24283..24466Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 24284..24466 +
1694079133.84232-CDS-S-dermatodea_contig128:24283..244661694079133.84232-CDS-S-dermatodea_contig128:24283..24466Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 24284..24466 +
1622924262.408112-CDS-S-dermatodea_contig128:24600..247351622924262.408112-CDS-S-dermatodea_contig128:24600..24735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 24601..24735 +
1694079133.856613-CDS-S-dermatodea_contig128:24600..247351694079133.856613-CDS-S-dermatodea_contig128:24600..24735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 24601..24735 +
1622924262.4202719-CDS-S-dermatodea_contig128:24957..250261622924262.4202719-CDS-S-dermatodea_contig128:24957..25026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 24958..25026 +
1694079133.8653426-CDS-S-dermatodea_contig128:24957..250261694079133.8653426-CDS-S-dermatodea_contig128:24957..25026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 24958..25026 +
1622924262.4317393-CDS-S-dermatodea_contig128:25257..255091622924262.4317393-CDS-S-dermatodea_contig128:25257..25509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 25258..25509 +
1694079133.873923-CDS-S-dermatodea_contig128:25257..255091694079133.873923-CDS-S-dermatodea_contig128:25257..25509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 25258..25509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig128.1713.1

>prot_S-dermatodea_contig128.1713.1 ID=prot_S-dermatodea_contig128.1713.1|Name=mRNA_S-dermatodea_contig128.1713.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=213bp
MPWQVHKRQEKNAILRHLRNVPYEVTPGLLADFVLGPKACAVFISLRYHL
LYPHYLIQRIKELSRHFTLRVLLCHVDVDDSEKPLLDINKMAVLNDFTFI
LAWSLQEAGRYLETYKAYEQKSADSIQEKVDDDYLAKLQDCFGVVRSVNK
SDVLTLASNFGSLKAVCDASADELALCPGLGDKKVARIYEALHEPLSRTL
RRKRSRPEGGNL*
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mRNA from alignment at S-dermatodea_contig128:24284..25509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig128.1713.1 ID=mRNA_S-dermatodea_contig128.1713.1|Name=mRNA_S-dermatodea_contig128.1713.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1226bp|location=Sequence derived from alignment at S-dermatodea_contig128:24284..25509+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTTGGCAGGTGCACAAGCGCCAGGAGAAGAACGCCATCCTCCGTCA
CCTGCGCAATGTACCGTACGAAGTCACACCAGGGCTTCTAGCTGACTTCG
TTCTCGGTCCCAAAGCATGCGCTGTATTCATCAGCCTGAGGTATCATCTT
CTCTATCCCCACTACCTCATTCAAAGAATCAAGGTGAGGCATCACTGCAT
CACTGTCCACGTGCGAGAGGAAGCGCGTGCGTGTCACACGATGTGCAACG
CGACCTGGAACATCCATGCCGCGTATATTTAGTCTCATGTCGGCTGGATG
TTCTCGTTCACGTGCAGGAGCTCTCCAGGCATTTCACCTTGCGAGTACTG
CTCTGCCACGTGGACGTCGATGACAGCGAGAAACCGCTGCTCGACATCAA
CAAGATGGCGGTGCTGAACGATTTCACGTTCATCCTCGCATGGAGCCTCC
AGGTGACTATGAGATAATCGAATTAGAGGGCGTACCGCAAAAACGTCGCG
CCCCCACGTTAAATTCACTTGGTTTTCGTTCGTGGGACCCAGGATACGTG
GGAAACCGACATAATCCGAAGTGCACTCTAAGCGCAACCTGTAGTTTGAC
AGACAGGCGCGACGCGATCACTCTACATAGGGAATTTATGGCTCCTTGAA
TCCCCGCTGTTTCCATCCTGTCAGGAGGCTGGGAGGTATTTGGAGACATA
CAAGGCGTACGAGCAAAAGTCTGCGGACAGCATCCAGGAGAAGGTGGGTA
GCAAGAATCGGTCGAGCGTGCTGTGATATTGCACAGAAGGACAACCGTCT
ATTAATAGTGGTTCACATGAATTTGACGGGTGCGTCGTTCAAGTCGCATA
CATAGAGTCTCCCACAAAATTCCAACGCTACACCGTGCCCCCCCCCCATA
CGTGCGACACATGTACGAACTGCAACAGCTGCGTTCCGACTCGTCACTGC
TGGCAACGCTAAATTTCGCTGCAGGTTGACGACGACTACTTGGCAAAGCT
GCAGGACTGCTTTGGGGTGGTACGTTCCGTCAACAAATCTGACGTCCTCA
CTCTCGCGTCAAACTTCGGGTCTCTCAAAGCCGTCTGCGACGCGTCTGCC
GACGAACTGGCGCTCTGCCCGGGTCTTGGAGACAAGAAAGTAGCGAGAAT
ATACGAGGCCTTACACGAGCCGCTGTCGCGCACGCTCAGACGCAAGCGTA
GTCGGCCTGAGGGGGGAAACTTGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig128:24284..25509+

>mRNA_S-dermatodea_contig128.1713.1 ID=mRNA_S-dermatodea_contig128.1713.1|Name=mRNA_S-dermatodea_contig128.1713.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at S-dermatodea_contig128:24284..25509+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTTGGCAGGTGCACAAGCGCCAGGAGAAGAACGCCATCCTCCGTCA
CCTGCGCAATGTACCGTACGAAGTCACACCAGGGCTTCTAGCTGACTTCG
TTCTCGGTCCCAAAGCATGCGCTGTATTCATCAGCCTGAGGTATCATCTT
CTCTATCCCCACTACCTCATTCAAAGAATCAAGATGCCTTGGCAGGTGCA
CAAGCGCCAGGAGAAGAACGCCATCCTCCGTCACCTGCGCAATGTACCGT
ACGAAGTCACACCAGGGCTTCTAGCTGACTTCGTTCTCGGTCCCAAAGCA
TGCGCTGTATTCATCAGCCTGAGGTATCATCTTCTCTATCCCCACTACCT
CATTCAAAGAATCAAGGAGCTCTCCAGGCATTTCACCTTGCGAGTACTGC
TCTGCCACGTGGACGTCGATGACAGCGAGAAACCGCTGCTCGACATCAAC
AAGATGGCGGTGCTGAACGATTTCACGTTCATCCTCGCATGGAGCCTCCA
GGAGCTCTCCAGGCATTTCACCTTGCGAGTACTGCTCTGCCACGTGGACG
TCGATGACAGCGAGAAACCGCTGCTCGACATCAACAAGATGGCGGTGCTG
AACGATTTCACGTTCATCCTCGCATGGAGCCTCCAGGAGGCTGGGAGGTA
TTTGGAGACATACAAGGCGTACGAGCAAAAGTCTGCGGACAGCATCCAGG
AGAAGGAGGCTGGGAGGTATTTGGAGACATACAAGGCGTACGAGCAAAAG
TCTGCGGACAGCATCCAGGAGAAGGTTGACGACGACTACTTGGCAAAGCT
GCAGGACTGCTTTGGGGTGGTACGTTCCGTCAACAAATCTGACGTCCTCA
CTCTCGCGTCAAACTTCGGGTCTCTCAAAGCCGTCTGCGACGCGTCTGCC
GACGAACTGGCGCTCTGCCCGGGTCTTGGAGACAAGAAAGTAGCGAGAAT
ATACGAGGCCTTACACGAGCCGCTGTCGCGCACGCTCAGACGCAAGCGTA
GTCGGCCTGAGGGGGGAAACTTGTAGGTTGACGACGACTACTTGGCAAAG
CTGCAGGACTGCTTTGGGGTGGTACGTTCCGTCAACAAATCTGACGTCCT
CACTCTCGCGTCAAACTTCGGGTCTCTCAAAGCCGTCTGCGACGCGTCTG
CCGACGAACTGGCGCTCTGCCCGGGTCTTGGAGACAAGAAAGTAGCGAGA
ATATACGAGGCCTTACACGAGCCGCTGTCGCGCACGCTCAGACGCAAGCG
TAGTCGGCCTGAGGGGGGAAACTTGTAG
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