mRNA_S-dermatodea_contig128.1709.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig128.1709.1
Unique NamemRNA_S-dermatodea_contig128.1709.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: D7FPR8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR8_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.220e-48
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQGRSGR 246
            QVSRLKHLTIDIGQEVRSQNDLI+GMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTF+AIWYILKQ R GR
Sbjct:   49 QVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILKQTRGGR 129          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A835YRV7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.480e-29
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQ 231
            QVS LK LTIDIG EV SQN L++GM   MFDA GLLGGT+++I TMM +GGS+HMCYLVAFIV TF+ IW+++ +
Sbjct:   48 QVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGK 123          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S0CDW0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDW0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.300e-21
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFT-FIAIWYILKQGRSG 243
            QV+RLK LTIDIG EVR QN L++ M       R LL G+LRRI  M+ QGGS+HMCY+V+FIVF  F   W +  +G+SG
Sbjct:   63 QVARLKGLTIDIGNEVREQNSLLDDMGDGFNSTRDLLAGSLRRIGNMLEQGGSKHMCYMVSFIVFVMFFLYWVMSYKGQSG 143          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: B7G253_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G253_PHATC)

HSP 1 Score: 87.8 bits (216), Expect = 2.520e-20
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    7 VSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILK-QGRSG 243
            V+RLK LTIDIG EVR QN L++ M     + R +L G+LRRI TM+  GG +HMCY+VAF VF  + +W+++  +G SG
Sbjct:   65 VARLKGLTIDIGNEVREQNSLLDNMGDGFENTRDMLAGSLRRIGTMLESGGMKHMCYMVAFCVFVMLFLWWLMSHKGTSG 144          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A1Z5KR69_FISSO (Blocked early in transport 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR69_FISSO)

HSP 1 Score: 86.3 bits (212), Expect = 8.680e-20
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    7 VSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQGRS 240
            V+RLK LTIDIG EVR QN L++GM     + R LL  +L RI TM+  GG++HMCYLV F VF  + +W+++K   S
Sbjct:   62 VARLKGLTIDIGDEVRQQNSLLDGMNDGFQNTRDLLQSSLMRIGTMLESGGAKHMCYLVGFSVFVMVFLWWLMKYQSS 139          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S2R889_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R889_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.020e-19
Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILK-QGRSG 243
            QV+RLK LTI+IG EVR QN  ++ M+    +   LL G+LRRI +M+  GG++HMCY+VAF+VF  I +++I+  +G+SG
Sbjct:   67 QVARLKGLTINIGNEVREQNSFLDNMQDGFANTGDLLAGSLRRIGSMLESGGAKHMCYMVAFVVFVMIFLYWIMTYKGQSG 147          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A4D9D9V6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9V6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.020e-19
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQ 231
            QVS LK LTIDIG EVRSQN L++ M        GL+G T+RR+N M+    SRHM +LVAF+VF FI ++YI++ 
Sbjct:   70 QVSMLKELTIDIGTEVRSQNHLLDDMGSGFLRTDGLMGSTMRRLNKMLTTSSSRHMLWLVAFVVFVFIFVYYIIRH 145          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S2UA83_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA83_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.060e-19
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAI-WYILKQGRSG 243
            QV+RLK LTIDIG EV+ QN L++ M     + R LL G+LRRI TM+  GG++HMCY+V F+VF  + + W +  +G +G
Sbjct:  108 QVARLKGLTIDIGNEVKEQNSLLDDMGDGFANTRDLLAGSLRRIGTMLESGGAKHMCYMVGFVVFVMVFLYWVMTHKGTNG 188          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S2G7S7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7S7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.020e-18
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQGRSG 243
            Q+ RLK L+IDI +EV  QN +++GM  QM  A GLL  TL ++ TM+  GGS+HM YL+ F+VF+FI I++I+      
Sbjct:   46 QLGRLKELSIDINEEVADQNRMLDGMGNQMNSASGLLNETLGKLGTMLKSGGSKHMVYLIGFVVFSFIMIYWIMTHKSQA 125          
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7R9WA63_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WA63_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.220e-18
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILK-QGRSG 243
            V+RLK LTIDIG EV+ QN L++ M     +   +L G+LRRI TM+ +GG++HMCY++ F+VF    +++I+  +G+SG
Sbjct:   69 VARLKGLTIDIGNEVKEQNGLLDNMGDNFGNVGDMLSGSLRRIGTMLERGGAKHMCYMIGFVVFVMCFLYWIMTHKGQSG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR8_ECTSI1.220e-4895.06Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835YRV7_9STRA6.480e-2965.79Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S0CDW0_9STRA4.300e-2155.56Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G253_PHATC2.520e-2051.25Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KR69_FISSO8.680e-2051.28Blocked early in transport 1 n=1 Tax=Fistulifera s... [more]
A0A7S2R889_9STRA3.020e-1949.38Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A4D9D9V6_9STRA3.020e-1953.95t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2UA83_9STRA4.060e-1949.38Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S2G7S7_9STRA2.020e-1847.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9WA63_9STRA7.220e-1846.25Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig128contigS-dermatodea_contig128:1031..2099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue9.1e-37
Seed eggNOG ortholog2880.D7FPR8
Preferred nameBET1
KEGG koko:K08504,ko:K21412
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019905,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030173,GO:0031090,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0050789,GO:0050794,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060627,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098827,GO:2000156
EggNOG free text desc.protein transport
EggNOG OGsKOG3385@1,KOG3385@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categorysignal anchor
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.8928027-CDS-S-dermatodea_contig128:1030..10781622924261.8928027-CDS-S-dermatodea_contig128:1030..1078Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 1031..1078 +
1694079133.4026985-CDS-S-dermatodea_contig128:1030..10781694079133.4026985-CDS-S-dermatodea_contig128:1030..1078Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 1031..1078 +
1622924261.9050872-CDS-S-dermatodea_contig128:1898..20991622924261.9050872-CDS-S-dermatodea_contig128:1898..2099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 1899..2099 +
1694079133.4248176-CDS-S-dermatodea_contig128:1898..20991694079133.4248176-CDS-S-dermatodea_contig128:1898..2099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig128 1899..2099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig128.1709.1prot_S-dermatodea_contig128.1709.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig128 1031..2099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig128.1709.1

>prot_S-dermatodea_contig128.1709.1 ID=prot_S-dermatodea_contig128.1709.1|Name=mRNA_S-dermatodea_contig128.1709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
LQVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMA
QGGSRHMCYLVAFIVFTFIAIWYILKQGRSGR*
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mRNA from alignment at S-dermatodea_contig128:1031..2099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig128.1709.1 ID=mRNA_S-dermatodea_contig128.1709.1|Name=mRNA_S-dermatodea_contig128.1709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1069bp|location=Sequence derived from alignment at S-dermatodea_contig128:1031..2099+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGGTGTCGCGCCTCAAACATCTGACGATCGACATTGGTCAAGAGGT GGGCTATCCAAGTCGGTAGAATGTAGACACGTAGAGTTAGTTCTCTTCTG CCGTAGGAGGTGGGGTTGTTTAGCAGACCTAAGTATCCAAGGTTGCCGTC TCTGTTTCCGAGCGTTGTGTTTTGCACAATACATATGTACTAATGCTGCT GTAATATTCAGTAGTTTGGAAACGATTAGCCGGACCAGCCAATTAAACCT GTCCAGAGTGGAAGGGTTTAAATATGTCATATACTTGTATATGCATGCGA TACAAGGGTACGTCTCCGAGGATACCCTTCGTGTTAACGTGTGTGTGTTA TCACGATACCTGTTTTCGGTAAACTTCCGACCACGATTACACATCGGCAG TGGGTACGTTGTGGCCAAAACAAATGTTGAGCCCACACGCTGTGGCGACC AATGAAAAGTGAAAAGGTGGGAGAGGTCATTAGGCTAGCACAGCTCACGG TTGCGTTCGGCTTTGCAATCTACTACAGTTGTGATGTGTATTAATACTGC TGTACCTTTTGAAGAGATTAGTTTTTTTGTATTTACTGCCTCTTATTCCC TTCAGGTTAATTGACGTTAGCATTTCGAACCCTGTTAATATCAAGCACCA TCCTAGAACAAGCTGTACAAGTTGGTTTGACATCTACCACCTGTATTGCT GTTTGGAGTCTGGTAGTACGAACGGCAGCTCCAACCTTTGGAAAAATACT GGTATATTATATACCGGTACCTGGTAGTATTTTTCCAAGGGCTCCAACCA CTATGAATACCTACGTATTACGTATCTCAACGCCGTAATGATGTACCTGA TGGGCCCTCCCTTGACAGGTTCGAAGTCAGAATGACTTGATCAACGGCAT GGAAGGACAGATGTTCGACGCTCGGGGTCTGCTGGGAGGTACTCTGCGAC GGATTAACACGATGATGGCCCAGGGCGGCAGCCGTCACATGTGCTATCTT GTTGCCTTCATCGTGTTCACGTTCATCGCTATATGGTACATATTGAAACA AGGAAGAAGCGGGCGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig128:1031..2099+

>mRNA_S-dermatodea_contig128.1709.1 ID=mRNA_S-dermatodea_contig128.1709.1|Name=mRNA_S-dermatodea_contig128.1709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig128:1031..2099+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGGTGTCGCGCCTCAAACATCTGACGATCGACATTGGTCAAGAGCT
GCAGGTGTCGCGCCTCAAACATCTGACGATCGACATTGGTCAAGAGGTTC
GAAGTCAGAATGACTTGATCAACGGCATGGAAGGACAGATGTTCGACGCT
CGGGGTCTGCTGGGAGGTACTCTGCGACGGATTAACACGATGATGGCCCA
GGGCGGCAGCCGTCACATGTGCTATCTTGTTGCCTTCATCGTGTTCACGT
TCATCGCTATATGGTACATATTGAAACAAGGAAGAAGCGGGCGGTAGGTT
CGAAGTCAGAATGACTTGATCAACGGCATGGAAGGACAGATGTTCGACGC
TCGGGGTCTGCTGGGAGGTACTCTGCGACGGATTAACACGATGATGGCCC
AGGGCGGCAGCCGTCACATGTGCTATCTTGTTGCCTTCATCGTGTTCACG
TTCATCGCTATATGGTACATATTGAAACAAGGAAGAAGCGGGCGGTAG
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