mRNA_S-dermatodea_contig128.1709.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: D7FPR8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR8_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.220e-48 Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQGRSGR 246
QVSRLKHLTIDIGQEVRSQNDLI+GMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTF+AIWYILKQ R GR
Sbjct: 49 QVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILKQTRGGR 129
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A835YRV7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV7_9STRA) HSP 1 Score: 108 bits (271), Expect = 6.480e-29 Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQ 231
QVS LK LTIDIG EV SQN L++GM MFDA GLLGGT+++I TMM +GGS+HMCYLVAFIV TF+ IW+++ +
Sbjct: 48 QVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGK 123
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S0CDW0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDW0_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.300e-21 Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFT-FIAIWYILKQGRSG 243
QV+RLK LTIDIG EVR QN L++ M R LL G+LRRI M+ QGGS+HMCY+V+FIVF F W + +G+SG
Sbjct: 63 QVARLKGLTIDIGNEVREQNSLLDDMGDGFNSTRDLLAGSLRRIGNMLEQGGSKHMCYMVSFIVFVMFFLYWVMSYKGQSG 143
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: B7G253_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G253_PHATC) HSP 1 Score: 87.8 bits (216), Expect = 2.520e-20 Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 7 VSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILK-QGRSG 243
V+RLK LTIDIG EVR QN L++ M + R +L G+LRRI TM+ GG +HMCY+VAF VF + +W+++ +G SG
Sbjct: 65 VARLKGLTIDIGNEVREQNSLLDNMGDGFENTRDMLAGSLRRIGTMLESGGMKHMCYMVAFCVFVMLFLWWLMSHKGTSG 144
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A1Z5KR69_FISSO (Blocked early in transport 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR69_FISSO) HSP 1 Score: 86.3 bits (212), Expect = 8.680e-20 Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 7 VSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQGRS 240
V+RLK LTIDIG EVR QN L++GM + R LL +L RI TM+ GG++HMCYLV F VF + +W+++K S
Sbjct: 62 VARLKGLTIDIGDEVRQQNSLLDGMNDGFQNTRDLLQSSLMRIGTMLESGGAKHMCYLVGFSVFVMVFLWWLMKYQSS 139
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S2R889_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R889_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.020e-19 Identity = 40/81 (49.38%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILK-QGRSG 243
QV+RLK LTI+IG EVR QN ++ M+ + LL G+LRRI +M+ GG++HMCY+VAF+VF I +++I+ +G+SG
Sbjct: 67 QVARLKGLTINIGNEVREQNSFLDNMQDGFANTGDLLAGSLRRIGSMLESGGAKHMCYMVAFVVFVMIFLYWIMTYKGQSG 147
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A4D9D9V6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9V6_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.020e-19 Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQ 231
QVS LK LTIDIG EVRSQN L++ M GL+G T+RR+N M+ SRHM +LVAF+VF FI ++YI++
Sbjct: 70 QVSMLKELTIDIGTEVRSQNHLLDDMGSGFLRTDGLMGSTMRRLNKMLTTSSSRHMLWLVAFVVFVFIFVYYIIRH 145
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S2UA83_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA83_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.060e-19 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAI-WYILKQGRSG 243
QV+RLK LTIDIG EV+ QN L++ M + R LL G+LRRI TM+ GG++HMCY+V F+VF + + W + +G +G
Sbjct: 108 QVARLKGLTIDIGNEVKEQNSLLDDMGDGFANTRDLLAGSLRRIGTMLESGGAKHMCYMVGFVVFVMVFLYWVMTHKGTNG 188
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7S2G7S7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7S7_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.020e-18 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 4 QVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILKQGRSG 243
Q+ RLK L+IDI +EV QN +++GM QM A GLL TL ++ TM+ GGS+HM YL+ F+VF+FI I++I+
Sbjct: 46 QLGRLKELSIDINEEVADQNRMLDGMGNQMNSASGLLNETLGKLGTMLKSGGSKHMVYLIGFVVFSFIMIYWIMTHKSQA 125
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Match: A0A7R9WA63_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WA63_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 7.220e-18 Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 7 VSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFIAIWYILK-QGRSG 243
V+RLK LTIDIG EV+ QN L++ M + +L G+LRRI TM+ +GG++HMCY++ F+VF +++I+ +G+SG
Sbjct: 69 VARLKGLTIDIGNEVKEQNGLLDNMGDNFGNVGDMLSGSLRRIGTMLERGGAKHMCYMIGFVVFVMCFLYWIMTHKGQSG 148 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig128.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig128.1709.1 >prot_S-dermatodea_contig128.1709.1 ID=prot_S-dermatodea_contig128.1709.1|Name=mRNA_S-dermatodea_contig128.1709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp LQVSRLKHLTIDIGQEVRSQNDLINGMEGQMFDARGLLGGTLRRINTMMAback to top mRNA from alignment at S-dermatodea_contig128:1031..2099+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig128.1709.1 ID=mRNA_S-dermatodea_contig128.1709.1|Name=mRNA_S-dermatodea_contig128.1709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1069bp|location=Sequence derived from alignment at S-dermatodea_contig128:1031..2099+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig128:1031..2099+ >mRNA_S-dermatodea_contig128.1709.1 ID=mRNA_S-dermatodea_contig128.1709.1|Name=mRNA_S-dermatodea_contig128.1709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig128:1031..2099+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |