mRNA_S-dermatodea_contig1278.1701.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI) HSP 1 Score: 233 bits (594), Expect = 2.710e-70 Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAGR 372
Y +KNEQDRF+PTTLGLALVDGYDNIGFQMSAP LRAAMELDCTRISRGEDTKEAVV+RCISKMKECFQTCQA AHKLD+AVAMHF+PLGSSGGESRTVR GRGFS+CG CG AMDLKKSS+GR
Sbjct: 335 YAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGR 458
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A7S0G8W9_9STRA (DNA topoisomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8W9_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.940e-28 Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 357
Y ++ Q +F PT LG+ALV+GY+++G+Q++ P LR E +C ++ G +K+ ++ +SKM++CF A AHKLD AVA HFQ LGS GG +R + FSKCG C M LK+
Sbjct: 172 YATRDNQQKFHPTKLGIALVEGYNSMGYQLNKPDLRRETEAECNLVASGRKSKDQIIGPILSKMRDCFDRVNAEAHKLDLAVARHFQALGSDGGNFTVLR--QSFSKCGQCENLMTLKE 288
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: B7G3B1_PHATC (DNA topoisomerase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3B1_PHATC) HSP 1 Score: 112 bits (281), Expect = 1.840e-26 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 357
Y K+ + +F PT LG+ALV+GY+++G+Q++ P LR ME +C ++ G TKE ++ ++KMK C++T +A A KLDEAVA HF LG+ S+ V FS+CG C +M LK+
Sbjct: 606 YARKDGRQKFLPTPLGIALVEGYNSMGYQLNKPDLRREMEAECNEVASGRKTKEEIMVPILAKMKSCYETARAEARKLDEAVARHFPRLGAGESTSQVVEES--FSECGVCRNSMALKQ 722
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A7S2LVS8_9STRA (DNA topoisomerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVS8_9STRA) HSP 1 Score: 110 bits (276), Expect = 8.550e-26 Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAG 369
Y K+ RF PT LG+ALV+GY+++G+Q++ P LR ME +C ++ G T++ ++ +SKM ECF+ A HKLDEAVA HF LGS + R ++ F++CG+C LK+ + G
Sbjct: 386 YAEKDGNQRFHPTKLGIALVEGYNSMGYQLNKPDLRREMESECNAVAAGRKTRDQILGPILSKMLECFKIVNAEVHKLDEAVARHFNNLGSDSSQYRVLQ--ANFTRCGSCNGMTVLKQRTGG 506
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.220e-25 Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 19 QDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGR------GFSKCGACGAAMDLKK 357
Q RF PT LGL LV+GY+ IG+Q++ P LRA ME +C R++RGE + +V C+ KMKECF+ CQ +L EAV + + G GG G GFS+CG C MDL++
Sbjct: 569 QRRFQPTNLGLGLVEGYEEIGYQLTKPELRAEMERECKRVARGERGRTEMVQACLLKMKECFEDCQNQWERLPEAVGKYLRRYGQGGGREXXXXXGTIRTMQAGFSQCGHCQGRMDLRR 687
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: B8BZX1_THAPS (DNA topoisomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZX1_THAPS) HSP 1 Score: 107 bits (268), Expect = 9.830e-25 Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 357
Y K++ RF PT LG+ALV+GY+++G+Q++ P LR ME +C+ ++ G TK+ ++ I+KM CF+T A KLD AVA HF LGS+ +V FS CG C M LK+
Sbjct: 552 YAKKDQNQRFHPTKLGIALVEGYNSMGYQLNKPDLRREMEAECSAVAAGRKTKDQILGPVIAKMLHCFRTANAEVEKLDTAVARHFDKLGSNRNNEYSVLQAD-FSVCGTCNRMMTLKE 669
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A1E7EWM7_9STRA (DNA topoisomerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWM7_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.830e-23 Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 357
Y K+ RF PT LG+ALV+GY+N+G+Q++ P LR E +C ++ G+ +K+ +V + KMK+C++ +AHKLD+A+A H+ +G+ G V + FS+CG C +M LK+
Sbjct: 577 YATKDNNQRFSPTKLGIALVEGYNNMGYQLNKPDLRRETERECNLVANGQKSKDDIVGPILDKMKDCYRVATRDAHKLDQAMARHYSRVGT--GNDTEVLQAQ-FSECGNCQRSMALKQ 692
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A6A5C7F2_NAEFO (DNA topoisomerase n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C7F2_NAEFO) HSP 1 Score: 102 bits (254), Expect = 7.990e-23 Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 22 DRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAGR 372
+RF T LG+AL+ GYD IG+++S P+LRA ME D IS+G+ TK+AV+++ ++ K F +AH LD+AV HF+P+G SG VR+ FS CG CG +MDLK+ R
Sbjct: 537 NRFEATNLGIALLQGYDLIGYELSTPNLRAKMEKDMMCISQGQITKDAVINQSLAMYKHVFMQICKSAHLLDKAVQQHFKPIGESGQSKVLVRS---FSMCG-CGNSMDLKEQDGHR 649
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: UPI001CFD67DF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD67DF) HSP 1 Score: 101 bits (251), Expect = 2.040e-22 Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 22 DRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAGR 372
+RF + LG+AL+ GYD IG+++S P+LRA ME D IS+G+ TK+AV+++ ++ K F +AH LD+AV HF+P+G SG VR+ FS CG CG +MDLK+ R
Sbjct: 537 NRFEASNLGIALLQGYDLIGYELSTPNLRAKMEKDMVCISQGQITKDAVINQSLAMYKHVFMQICKSAHLLDKAVQQHFKPIGESGQSKVLVRS---FSMCG-CGNSMDLKEQDGHR 649
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A7S3PV05_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV05_9STRA) HSP 1 Score: 101 bits (251), Expect = 2.040e-22 Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 357
Y KN Q +F PT LG+ALV+GY+++G+Q++ P LR ME +C ++ G+ KE ++ ++KM + F+ A A KLDEAVA HF +G++ S ++ + FS CG C + LK+
Sbjct: 584 YAEKNGQQQFNPTKLGIALVEGYNSMGYQLNRPDLRREMEAECNAVAAGQKRKEEIMQPILAKMIDVFRKANAEAVKLDEAVARHFTRIGTNDANSTLLQ--QRFSACGTCEGMLSLKE 700 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1278.1701.1 >prot_S-dermatodea_contig1278.1701.1 ID=prot_S-dermatodea_contig1278.1701.1|Name=mRNA_S-dermatodea_contig1278.1701.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEback to top mRNA from alignment at S-dermatodea_contig1278:18408..20446+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1278.1701.1 ID=mRNA_S-dermatodea_contig1278.1701.1|Name=mRNA_S-dermatodea_contig1278.1701.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2039bp|location=Sequence derived from alignment at S-dermatodea_contig1278:18408..20446+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1278:18408..20446+ >mRNA_S-dermatodea_contig1278.1701.1 ID=mRNA_S-dermatodea_contig1278.1701.1|Name=mRNA_S-dermatodea_contig1278.1701.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig1278:18408..20446+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |