prot_S-dermatodea_contig1278.1701.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1278.1701.1
Unique Nameprot_S-dermatodea_contig1278.1701.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length125
Homology
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.710e-70
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAGR 124
            Y +KNEQDRF+PTTLGLALVDGYDNIGFQMSAP LRAAMELDCTRISRGEDTKEAVV+RCISKMKECFQTCQA AHKLD+AVAMHF+PLGSSGGESRTVR GRGFS+CG CG AMDLKKSS+GR
Sbjct:  335 YAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGR 458          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A7S0G8W9_9STRA (DNA topoisomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8W9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.940e-28
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 119
            Y  ++ Q +F PT LG+ALV+GY+++G+Q++ P LR   E +C  ++ G  +K+ ++   +SKM++CF    A AHKLD AVA HFQ LGS GG    +R  + FSKCG C   M LK+
Sbjct:  172 YATRDNQQKFHPTKLGIALVEGYNSMGYQLNKPDLRRETEAECNLVASGRKSKDQIIGPILSKMRDCFDRVNAEAHKLDLAVARHFQALGSDGGNFTVLR--QSFSKCGQCENLMTLKE 288          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: B7G3B1_PHATC (DNA topoisomerase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3B1_PHATC)

HSP 1 Score: 112 bits (281), Expect = 1.840e-26
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 119
            Y  K+ + +F PT LG+ALV+GY+++G+Q++ P LR  ME +C  ++ G  TKE ++   ++KMK C++T +A A KLDEAVA HF  LG+    S+ V     FS+CG C  +M LK+
Sbjct:  606 YARKDGRQKFLPTPLGIALVEGYNSMGYQLNKPDLRREMEAECNEVASGRKTKEEIMVPILAKMKSCYETARAEARKLDEAVARHFPRLGAGESTSQVVEES--FSECGVCRNSMALKQ 722          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A7S2LVS8_9STRA (DNA topoisomerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVS8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.550e-26
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAG 123
            Y  K+   RF PT LG+ALV+GY+++G+Q++ P LR  ME +C  ++ G  T++ ++   +SKM ECF+   A  HKLDEAVA HF  LGS   + R ++    F++CG+C     LK+ + G
Sbjct:  386 YAEKDGNQRFHPTKLGIALVEGYNSMGYQLNKPDLRREMESECNAVAAGRKTRDQILGPILSKMLECFKIVNAEVHKLDEAVARHFNNLGSDSSQYRVLQ--ANFTRCGSCNGMTVLKQRTGG 506          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.220e-25
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    7 QDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGR------GFSKCGACGAAMDLKK 119
            Q RF PT LGL LV+GY+ IG+Q++ P LRA ME +C R++RGE  +  +V  C+ KMKECF+ CQ    +L EAV  + +  G  GG       G       GFS+CG C   MDL++
Sbjct:  569 QRRFQPTNLGLGLVEGYEEIGYQLTKPELRAEMERECKRVARGERGRTEMVQACLLKMKECFEDCQNQWERLPEAVGKYLRRYGQGGGREXXXXXGTIRTMQAGFSQCGHCQGRMDLRR 687          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: B8BZX1_THAPS (DNA topoisomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZX1_THAPS)

HSP 1 Score: 107 bits (268), Expect = 9.830e-25
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 119
            Y  K++  RF PT LG+ALV+GY+++G+Q++ P LR  ME +C+ ++ G  TK+ ++   I+KM  CF+T  A   KLD AVA HF  LGS+     +V     FS CG C   M LK+
Sbjct:  552 YAKKDQNQRFHPTKLGIALVEGYNSMGYQLNKPDLRREMEAECSAVAAGRKTKDQILGPVIAKMLHCFRTANAEVEKLDTAVARHFDKLGSNRNNEYSVLQAD-FSVCGTCNRMMTLKE 669          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A1E7EWM7_9STRA (DNA topoisomerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWM7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.830e-23
Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 119
            Y  K+   RF PT LG+ALV+GY+N+G+Q++ P LR   E +C  ++ G+ +K+ +V   + KMK+C++    +AHKLD+A+A H+  +G+  G    V   + FS+CG C  +M LK+
Sbjct:  577 YATKDNNQRFSPTKLGIALVEGYNNMGYQLNKPDLRRETERECNLVANGQKSKDDIVGPILDKMKDCYRVATRDAHKLDQAMARHYSRVGT--GNDTEVLQAQ-FSECGNCQRSMALKQ 692          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A6A5C7F2_NAEFO (DNA topoisomerase n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C7F2_NAEFO)

HSP 1 Score: 102 bits (254), Expect = 7.990e-23
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 0
Query:    8 DRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAGR 124
            +RF  T LG+AL+ GYD IG+++S P+LRA ME D   IS+G+ TK+AV+++ ++  K  F     +AH LD+AV  HF+P+G SG     VR+   FS CG CG +MDLK+    R
Sbjct:  537 NRFEATNLGIALLQGYDLIGYELSTPNLRAKMEKDMMCISQGQITKDAVINQSLAMYKHVFMQICKSAHLLDKAVQQHFKPIGESGQSKVLVRS---FSMCG-CGNSMDLKEQDGHR 649          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: UPI001CFD67DF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD67DF)

HSP 1 Score: 101 bits (251), Expect = 2.040e-22
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 0
Query:    8 DRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKKSSAGR 124
            +RF  + LG+AL+ GYD IG+++S P+LRA ME D   IS+G+ TK+AV+++ ++  K  F     +AH LD+AV  HF+P+G SG     VR+   FS CG CG +MDLK+    R
Sbjct:  537 NRFEASNLGIALLQGYDLIGYELSTPNLRAKMEKDMVCISQGQITKDAVINQSLAMYKHVFMQICKSAHLLDKAVQQHFKPIGESGQSKVLVRS---FSMCG-CGNSMDLKEQDGHR 649          
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Match: A0A7S3PV05_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV05_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.040e-22
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 0
Query:    1 YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGEDTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVRNGRGFSKCGACGAAMDLKK 119
            Y  KN Q +F PT LG+ALV+GY+++G+Q++ P LR  ME +C  ++ G+  KE ++   ++KM + F+   A A KLDEAVA HF  +G++   S  ++  + FS CG C   + LK+
Sbjct:  584 YAEKNGQQQFNPTKLGIALVEGYNSMGYQLNRPDLRREMEAECNAVAAGQKRKEEIMQPILAKMIDVFRKANAEAVKLDEAVARHFTRIGTNDANSTLLQ--QRFSACGTCEGMLSLKE 700          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1278.1701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI2.710e-7089.52DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S0G8W9_9STRA7.940e-2844.54DNA topoisomerase n=1 Tax=Proboscia inermis TaxID=... [more]
B7G3B1_PHATC1.840e-2643.70DNA topoisomerase n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2LVS8_9STRA8.550e-2641.46DNA topoisomerase n=1 Tax=Skeletonema marinoi TaxI... [more]
A0A4D9CZ97_9STRA2.220e-2544.54DNA topoisomerase n=1 Tax=Nannochloropsis salina C... [more]
B8BZX1_THAPS9.830e-2542.86DNA topoisomerase (Fragment) n=1 Tax=Thalassiosira... [more]
A0A1E7EWM7_9STRA5.830e-2339.50DNA topoisomerase n=1 Tax=Fragilariopsis cylindrus... [more]
A0A6A5C7F2_NAEFO7.990e-2346.15DNA topoisomerase n=1 Tax=Naegleria fowleri TaxID=... [more]
UPI001CFD67DF2.040e-2245.30uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S3PV05_9STRA2.040e-2240.34DNA topoisomerase (Fragment) n=1 Tax=Chaetoceros d... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10coord: 1..89
e-value: 8.2E-24
score: 86.1
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 3..117
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 5..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1278contigS-dermatodea_contig1278:18408..20446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1278.1701.1mRNA_S-dermatodea_contig1278.1701.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1278 18408..20446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1278.1701.1 ID=prot_S-dermatodea_contig1278.1701.1|Name=mRNA_S-dermatodea_contig1278.1701.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
YCLKNEQDRFFPTTLGLALVDGYDNIGFQMSAPHLRAAMELDCTRISRGE
DTKEAVVDRCISKMKECFQTCQANAHKLDEAVAMHFQPLGSSGGESRTVR
NGRGFSKCGACGAAMDLKKSSAGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013824Topo_IA_cen_sub1
IPR000380Topo_IA
IPR023405Topo_IA_core_domain