prot_S-dermatodea_contig8907.17003.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8907.17003.1
Unique Nameprot_S-dermatodea_contig8907.17003.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length188
Homology
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 5.170e-48
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 0
Query:    1 MPWLVRSTIILGTARLLWILVAAVASLGAFVALESVTAPDGTSYRAVNCFNPLGFMDKVYPGTALLAGGATPPGPSCICSGQKISDEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLV 174
            MPW  RS I++G  + LW +VAA+A+LG+FVALE+V APDG+S+RA+ C +     D    G  + A        SC+C+G KISD ECEFSGLG+P  ++ + S+ WG  V  N++ CTVSG+VASWWFTP+  S  VKGAF+RAT SSFG+LCKAA  Q  +     +AQ V
Sbjct:  217 MPWTYRSAILMGIVQFLWCMVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGDGGGGGEDVFAAQN-----SCVCNGTKISDGECEFSGLGLPLMMVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRV 385          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 5.680e-33
Identity = 77/190 (40.53%), Postives = 115/190 (60.53%), Query Frame = 0
Query:    1 MPWLVRSTIILGTARLLWILVAAVASLGAFVALESVTAPDGTSYRAVNCFNPLGFMDKVYPGTALLAGGATPPGPSCICSGQKIS-DEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLVHPARRV--CPPRVLG 187
            MPW VR+ +++   ++LW+L++A+A+ G   +L +VT  DGT+Y+A +C + +  +D    G             SC+C G   S +  CE+ G G+  A+  + SL WGA V  N++T TV+G+VASWW++ DR ++ V+GA YRATH SFG+LCKAA   +A   VRLL + V    +V  C   VLG
Sbjct:  184 MPWTVRAGLLMSGVQVLWVLLSAMAAGGTIASLRTVTGLDGTTYKASSCSDVM--LDPPTRGMVHHL--------SCMCGGHVASYNSACEYEGRGLWLALFWLASLTWGADVIRNVVTATVTGSVASWWYSADRDASPVRGALYRATHGSFGSLCKAAAISTA---VRLLTRTVRRLAKVGRCGSFVLG 360          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 9.670e-28
Identity = 72/169 (42.60%), Postives = 102/169 (60.36%), Query Frame = 0
Query:    1 MPWLVRSTIILGTARLLWILVAAVASLGAFVALESVT-APDGTSYRAVNCFNPLGFMDKVYPGTALLAGGATP-PGPSCICSGQKIS-DEECEFSGLGIPFAVLGVI---SLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSA 163
            MP  +   + +G  R++W +++A++++G+FVA   V  + DGT+Y  + C       D V   +    G AT   G SC C G+ IS D  CEFSG G    VLGV    S +WG  V  +++  TV+G+VASWWF+P  +++ V+GAFYRATHSSFG+LCKA   Q A
Sbjct:   99 MPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGC------QDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDVVLATVAGSVASWWFSPGDTNS-VRGAFYRATHSSFGSLCKACPTQMA 260          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.930e-26
Identity = 75/182 (41.21%), Postives = 104/182 (57.14%), Query Frame = 0
Query:    1 MPWLVRSTIILGTARLLWILVAAVASLGAFVALESVTA-PDGTSYRAVNCFNPLGFMDKVYPGTALLAGGATPPGPSCICSGQKIS-DEECEFSGLGIPFAVLGVI---SLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLVHPA 177
            MP  +R  + +   +++W +++A A+ G+F A   V    DGT+Y ++ C   +      Y G    AG     G SC C G+ IS D  CEFSG G P  VL      S+ W  AV  N++T TV+G+VASWWF+P  +S+ V+GAFYRATHSSFG+LCKAA   + + V     +LV  A
Sbjct:  290 MPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLEC-QDITVPSSPYGGGETTAGS----GLSCHCGGEVISSDSGCEFSG-GFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSS-VRGAFYRATHSSFGSLCKAAAIVAVIRVAMFPLRLVSHA 464          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.580e-21
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 0
Query:    1 MPWLVRSTIILGTARLLWILVAAVASLGAFVALES-VTAPDGTSYRAVNCFNPLGFMDKVYPGTALLAGGATPPGPSCICSGQKIS-DEECEFSGLGIPFAVLGVI---SLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFG 152
            MP  +R  + +   +++W +++A A+ G+F A    V   DGT+Y ++ C   +      Y G    AG     G SC C G+ IS D  CEFS  G P  VL      S+ W  AV  N++T TV+G+VASWWF+P   + +V+GAFYRATHSSFG
Sbjct:   93 MPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLEC-QDIAVPSSPYGGGETTAGS----GLSCHCGGEVISSDSGCEFSS-GFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPG-DTRSVRGAFYRATHSSFG 242          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: A0A6G0WMC4_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMC4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.330e-10
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   79 CSGQKISDEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLV 174
            C  ++   E C  +G  +    L ++S+ WG  V  N++TCTV+G VA+WW+   R++ AV G+ YR+  +SFG++C  +L  + L  +R  AQ++
Sbjct:  217 CKKEEARGELCGGAGFNVTLFFL-LVSIYWGQQVIQNVMTCTVAGTVATWWYNT-RTNNAVSGSLYRSLTTSFGSICFGSLIVAILSAMRTTAQMI 310          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: A0A7S1TXQ5_9STRA (Choline transporter-like protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXQ5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.710e-10
Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = 0
Query:   34 ESVTAPDGTSYRAVNCFNPLGFMDKVYPGTALLAGGATPPGPSCICSGQKISDEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLVHPAR 178
            +SVT  +G  +   +C+      D+V   T    G  +   P          D +C  + +      L ++S  WG    SN++ CTV+GAVA+WWF P    + V GA  R+  +SFG++   A G   + +++   Q+V  AR
Sbjct:  261 DSVTI-NGDDFDLDDCYQVTSTTDEVNKPTGCYCGNESDSDPH--------KDGDCIETSINGGIWFLMLVSFYWGVTTISNVVHCTVAGAVATWWFNPAPGKSPVTGALKRSLTTSFGSI---AFGSLLVAIIKATRQVVRAAR 393          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: W4G5R8_9STRA (Choline transporter-like protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4G5R8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.140e-9
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 0
Query:   79 CSGQKISDEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLV 174
            C  ++   E C  +G  +    L ++S+ WG  V  N++TCTV+G VA+WW+   R+ +AV G+ YR+  SSFG++C  +L  + L  +R + + +
Sbjct:  223 CEQEESRGELCGGAGFNVTIFFL-LVSVYWGQQVIQNVMTCTVAGTVATWWYNA-RTESAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTI 316          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: W4G637_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G637_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.150e-9
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 0
Query:   79 CSGQKISDEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLV 174
            C  ++   E C  +G  +    L ++S+ WG  V  N++TCTV+G VA+WW+   R+ +AV G+ YR+  SSFG++C  +L  + L  +R + + +
Sbjct:  239 CEQEESRGELCGGAGFNVTIFFL-LVSVYWGQQVIQNVMTCTVAGTVATWWYNA-RTESAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTI 332          
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Match: A0A397AQR1_9STRA (Choline transporter-like protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AQR1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-9
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 0
Query:   79 CSGQKISDEECEFSGLGIPFAVLGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSSFGTLCKAALGQSALGVVRLLAQLV 174
            C  ++   E C  +G  +    L ++S+ WG  V  N++TCTV+G VA+WW+   R+ +AV G+ YR+  SSFG++C  +L  + L  +R + + +
Sbjct:  213 CEQEESRGELCGGAGFNVTIFFL-LVSVYWGQQVIQNVMTCTVAGTVATWWYNA-RTESAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTI 306          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8907.17003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LGQ1_ECTSI5.170e-4851.15Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FN10_ECTSI5.680e-3340.53Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM5_ECTSI9.670e-2842.60Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM6_ECTSI5.930e-2641.21Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM4_ECTSI1.580e-2140.76Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6G0WMC4_9STRA1.330e-1035.42Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
A0A7S1TXQ5_9STRA4.710e-1028.97Choline transporter-like protein n=2 Tax=Phaeomona... [more]
W4G5R8_9STRA1.140e-934.38Choline transporter-like protein n=4 Tax=Aphanomyc... [more]
W4G637_9STRA1.150e-934.38Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
A0A397AQR1_9STRA1.260e-934.38Choline transporter-like protein n=8 Tax=Aphanomyc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007603Choline transporter-likePFAMPF04515Choline_transpocoord: 1..174
e-value: 8.7E-22
score: 77.7
IPR007603Choline transporter-likePANTHERPTHR12385CTL TRANSPORTERcoord: 4..171
NoneNo IPR availablePANTHERPTHR12385:SF4PROTEIN PNS1coord: 4..171
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 131..187
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..130
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 16..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8907contigS-dermatodea_contig8907:2056..4190 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8907.17003.1mRNA_S-dermatodea_contig8907.17003.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8907 2009..7166 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8907.17003.1 ID=prot_S-dermatodea_contig8907.17003.1|Name=mRNA_S-dermatodea_contig8907.17003.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=188bp
MPWLVRSTIILGTARLLWILVAAVASLGAFVALESVTAPDGTSYRAVNCF
NPLGFMDKVYPGTALLAGGATPPGPSCICSGQKISDEECEFSGLGIPFAV
LGVISLVWGAAVFSNMITCTVSGAVASWWFTPDRSSAAVKGAFYRATHSS
FGTLCKAALGQSALGVVRLLAQLVHPARRVCPPRVLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like