prot_S-dermatodea_contig888.16990.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig888.16990.1
Unique Nameprot_S-dermatodea_contig888.16990.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length1093
Homology
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE)

HSP 1 Score: 588 bits (1515), Expect = 5.570e-188
Identity = 644/1079 (59.68%), Postives = 695/1079 (64.41%), Query Frame = 0
Query:  123 RWTEVLNILGHWEEHADRLDVKTYNIALSALSKCGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVKMEREGSEVRXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKNRGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAMTAVDGWAAAXXXXXXXXXXXXXXXXXXXXXXXSVVARSGREDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEKWQEALQLLEVDMPAAKVKXXXXXXXXXXXXXAGPKGNWEKAYQLLDGMWQDEAGAKPNKRTYDLAIQACGHGGEWELGVTLIDDMRDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWKRATEIFDEARYVRNIPPSLQIYGALLSSLADAERWADISTYFDRMAADGIVPDASATNTGVLAAAKLGDGRRALSLLEGDT----------------------------------RRWRWRLNDEGDDSSG---------GKAEGAARREEREAS----------------------PEVSESAISHAASLPALVDSGKGNERGRGGADAGVRSALGGGGWEAATPSLLNSVLHALDSAGEDAAVLEAVKRGREEGVLLNPAIYRCALKASGNLGDFKEAGTLLSQMAEENLAPDIVHWNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWSADSWSRSTGWGPEQDGSPRICEYEELYVDHGATAAS-----------CRGRNAIELLQEMENRGVQVCGRSFILAMAACLEGHRDRH--VEADLE---GPPEADFRLAEAALSLFDQVVEAGHRPTGSTYALALKACARTANKHRASALLTDMLDGRKSPSP---------------------------GTPGDAQAPIEVRPWHLASAVAAYDAAGDWDGARELWSEALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL 1093
            RWTEVL ILGHWEE+A RLD KTYN+ALSAL KCG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +MERE SEVRXXXXXXXXXXXXXXXXXXXXXXXXX   IK RGL+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   MTAVDGW AA                       SVVARSGREDVA           XXXXXXXXXXXX      EKWQEA++LLEVDMPAAKVKXXXXXXXXXXXXXAGP GNWEKAYQLLD MWQD  GAKP+K TYDL IQACGHGGEWELGVTLIDDMRDLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +WKRATEIFDEARYV  I PSLQIYGALL +LA+ ERWAD+  Y DRM ADG+  DA+ATNT VLAAA+LGDGRRALSLLEG                                    RR R    DEGD   G         G+ E    R +R A+                      PE +            + +  +   R  GG    V   +GG  WE  TP LL SVL ALD   ED+AVLEAVKRGRE+GVLLNP+IYRCALKA GNLGD+ +A  +L +MAEE+L PDIVHWNH                                           LWS DSW  S GWG E+D S   C  +      G    S           CRG+NAIELLQEM+ RGV++   ++ LAMAACLEGHRDRH  +EA L+   GPP AD RLAEAAL LFD++V AG  PT   YA ALKACARTAN  RA+AL   MLD    P+                              P   Q   EVRPWHLASA+AAYDAAGDW GA++LW EALRRGVSPRSPGY AA+  A+RAGD  AA +LV+EARGL LEL
Sbjct:  132 RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVRXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------MTAVDGWGAALRLLEGVLPDVNTYNAAL-----SVVARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDSVDDGVGG--WEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSS--CRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLEL 1166          
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI)

HSP 1 Score: 535 bits (1378), Expect = 7.280e-173
Identity = 404/758 (53.30%), Postives = 451/758 (59.50%), Query Frame = 0
Query:  449 MPAAKVKXXXXXXXXXXXXXAGPKGNWEKAYQLLDGMWQDEAGAKPNKRTYDLAIQACGHGGEWELGVTLIDDMRDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWKRATEIFDEARYVRNIPPSLQIYGALLSSLADAERWADISTYFDRMAADGIVPDASATNTGVLAAAKLGDGRRALSLLEGDT----------------------------------RRWRWRLNDEGDDSSG---------GKAEGAARREEREASP-------EVSE--------SAISHAASLPALV-----------DSGKGNERGRGGADAGVRSALGGGGWEAATPSLLNSVLHALDSAGEDAAVLEAVKRGREEGVLLNPAIYRCALKASGNLGDFKEAGTLLSQMAEENLAPDIVHWNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWSADSWSRSTGWGPEQDGSP---RICEYEELYVDHGA------TAASCRGRNAIELLQEMENRGVQVCGRSFILAMAACLEGHRDRH--VEADLE---GPPEADFRLAEAALSLFDQVVEAGHRPTGSTYALALKACARTANKHRASALLTDMLDG------------------------------RKSPSPGTPGDAQAPIEVRPWHLASAVAAYDAAGDWDGARELWSEALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL 1093
            MPAAKVK             AGP GNWEKAYQLLD MWQD  GAKP+K TYDL IQACGHGGEWELGVTLIDDMRDLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +WKRATEIFD+ARYV  I PSLQIYGALL +LA+ ERWAD+  Y DRM ADG+  DA+ATNT VLAAA+LGDGRRALSLLEG                                    RR R    DEGD   G         G+ E    R +R A+        E SE        S+   A     +V           D  +  ER     D GV     GGGWE  TP LLNSVL ALD   ED+AVLEAVKRGRE+G+LLN +IYRCALKA GNLGD+++A  +L +MAEE+L PDIVHWNH                                           LWS DSW  S GWG E+D S    R     E  +D            +CRG++AIELLQEM+ RGV++   ++ LAMAACLEGHRDRH  +EA L+   GPP AD RLAEA L LFD++V AG  PT   YA ALKACARTAN  RA+AL   MLD                               R SP P  P   Q   EVRPWHLAS + AYDAAGDW GA++LW EALRRGVSPRSPGY AA+ AA+RAGD  AA +LV+EARGL LEL
Sbjct:    1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEGEPEALLERRQRAATAGGEKRHGEESEVRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGV-----GGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNALSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPP---QPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLEL 750          
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-10
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0
Query:  115 LMDAGNRRRWTEVLNILGHWEEHADRLDVKTYNIALSALSKCG 157
            +M A  RRRWTEVL ILGHWEE+A RLD KTYN+ALSAL KCG
Sbjct:    1 MMAAARRRRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCG 43          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2A2_9PHAE5.570e-18859.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ90_ECTSI7.280e-17353.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ89_ECTSI1.230e-1076.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1083..1093
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 207..362
coord: 745..858
coord: 367..524
coord: 906..1090
coord: 526..659
coord: 111..214
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..1093
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 142..188
e-value: 3.0E-9
score: 36.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 389..421
e-value: 9.0E-5
score: 20.4
coord: 322..355
e-value: 4.3E-5
score: 21.4
coord: 498..531
e-value: 5.1E-5
score: 21.2
coord: 423..458
e-value: 0.0018
score: 16.3
coord: 252..285
e-value: 9.8E-5
score: 20.3
coord: 286..319
e-value: 2.4E-6
score: 25.4
coord: 145..178
e-value: 1.6E-8
score: 32.2
coord: 216..250
e-value: 8.5E-5
score: 20.5
coord: 604..637
e-value: 0.0019
score: 16.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 202..260
e-value: 4.0E-5
score: 23.6
coord: 518..577
e-value: 9.7E-6
score: 25.6
coord: 801..859
e-value: 0.0072
score: 16.4
coord: 448..507
e-value: 3.9E-4
score: 20.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 495..529
score: 10.227
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1024..1058
score: 8.232
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..456
score: 9.997
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 813..847
score: 8.276
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 565..599
score: 9.383
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 530..564
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 319..353
score: 10.227
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 457..492
score: 8.407
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1059..1093
score: 6.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 743..777
score: 5.568
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 10.896
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 177..211
score: 9.723
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 386..420
score: 10.545
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 601..635
score: 8.769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 142..176
score: 13.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..248
score: 11.279
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 975..1009
score: 6.895
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 284..318
score: 10.863
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 778..812
score: 8.605
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 897..1092
e-value: 3.2E-21
score: 78.0
coord: 211..366
e-value: 1.6E-41
score: 144.7
coord: 740..879
e-value: 5.3E-19
score: 70.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 576..666
e-value: 2.8E-14
score: 54.8
coord: 367..470
e-value: 5.6E-27
score: 96.2
coord: 471..575
e-value: 1.6E-23
score: 84.9
coord: 108..210
e-value: 5.3E-21
score: 76.8
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 288..440
e-value: 2.5E-9
score: 36.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig888contigS-dermatodea_contig888:7950..17580 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig888.16990.1mRNA_S-dermatodea_contig888.16990.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig888 7921..17580 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig888.16990.1 ID=prot_S-dermatodea_contig888.16990.1|Name=mRNA_S-dermatodea_contig888.16990.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1093bp
MAPLPCVTRSSYADLAFCVASLASRQALSLPSTSNRRTKVRQRPPSCLQQ
PPPLSAGLPTLPAMRDQKQHLLPNTTSDSCGAVEPPRNDVRDVRVSEGGG
STSGGGDTVQTQKSLMDAGNRRRWTEVLNILGHWEEHADRLDVKTYNIAL
SALSKCGRWKEAIAMLDRMRAAGVPPDVYSWNGAITACGRAGQAQLAVNL
LVKMEREGSEVRPDLFSYNGAMNAVAKAGRWTQALELLARIKNRGLAPDV
ISFSSAMYACDRAGKWQHALDILDLMRERNVEPNIITYGTAISACSRGGH
WEKALSLLQEISSRGLTVNAHVYGSAVHACVVGKEPRRALALLEEMIERG
VVPDAVVFTAAMTAVDGWAAALRLLEVMKRAGVLPDLRAYNAALSVVARS
GREDVALALLDQMRIDGCSPDLVSFNTAIDACASCEKWQEALQLLEVDMP
AAKVKPDVISFTSVIHACAGPKGNWEKAYQLLDGMWQDEAGAKPNKRTYD
LAIQACGHGGEWELGVTLIDDMRDLGIKPDAQTFNIAATACGRSGERLAA
ETLVANMWRSGVTPDEFTYASLVAACGTAGQWKRATEIFDEARYVRNIPP
SLQIYGALLSSLADAERWADISTYFDRMAADGIVPDASATNTGVLAAAKL
GDGRRALSLLEGDTRRWRWRLNDEGDDSSGGKAEGAARREEREASPEVSE
SAISHAASLPALVDSGKGNERGRGGADAGVRSALGGGGWEAATPSLLNSV
LHALDSAGEDAAVLEAVKRGREEGVLLNPAIYRCALKASGNLGDFKEAGT
LLSQMAEENLAPDIVHWNHALRASAAGARWREARARLQEMQAADVAPDAF
SYSMALKACSAGLWSADSWSRSTGWGPEQDGSPRICEYEELYVDHGATAA
SCRGRNAIELLQEMENRGVQVCGRSFILAMAACLEGHRDRHVEADLEGPP
EADFRLAEAALSLFDQVVEAGHRPTGSTYALALKACARTANKHRASALLT
DMLDGRKSPSPGTPGDAQAPIEVRPWHLASAVAAYDAAGDWDGARELWSE
ALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long