mRNA_S-dermatodea_contig888.16990.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 588 bits (1515), Expect = 7.170e-188 Identity = 644/1079 (59.68%), Postives = 695/1079 (64.41%), Query Frame = 3
Query: 396 RWTEVLNILGHWEEHADRLDVKTYNIALSALSKCGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVKMEREGSEVRXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKNRGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAMTAVDGWAAAXXXXXXXXXXXXXXXXXXXXXXXSVVARSGREDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEKWQEALQLLEVDMPAAKVKXXXXXXXXXXXXXAGPKGNWEKAYQLLDGMWQDEAGAKPNKRTYDLAIQACGHGGEWELGVTLIDDMRDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWKRATEIFDEARYVRNIPPSLQIYGALLSSLADAERWADISTYFDRMAADGIVPDASATNTGVLAAAKLGDGRRALSLLEGDT----------------------------------RRWRWRLNDEGDDSSG---------GKAEGAARREEREAS----------------------PEVSESAISHAASLPALVDSGKGNERGRGGADAGVRSALGGGGWEAATPSLLNSVLHALDSAGEDAAVLEAVKRGREEGVLLNPAIYRCALKASGNLGDFKEAGTLLSQMAEENLAPDIVHWNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWSADSWSRSTGWGPEQDGSPRICEYEELYVDHGATAAS-----------CRGRNAIELLQEMENRGVQVCGRSFILAMAACLEGHRDRH--VEADLE---GPPEADFRLAEAALSLFDQVVEAGHRPTGSTYALALKACARTANKHRASALLTDMLDGRKSPSP---------------------------GTPGDAQAPIEVRPWHLASAVAAYDAAGDWDGARELWSEALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL 3308
RWTEVL ILGHWEE+A RLD KTYN+ALSAL KCG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +MERE SEVRXXXXXXXXXXXXXXXXXXXXXXXXX IK RGL+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MTAVDGW AA SVVARSGREDVA XXXXXXXXXXXX EKWQEA++LLEVDMPAAKVKXXXXXXXXXXXXXAGP GNWEKAYQLLD MWQD GAKP+K TYDL IQACGHGGEWELGVTLIDDMRDLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +WKRATEIFDEARYV I PSLQIYGALL +LA+ ERWAD+ Y DRM ADG+ DA+ATNT VLAAA+LGDGRRALSLLEG RR R DEGD G G+ E R +R A+ PE + + + + R GG V +GG WE TP LL SVL ALD ED+AVLEAVKRGRE+GVLLNP+IYRCALKA GNLGD+ +A +L +MAEE+L PDIVHWNH LWS DSW S GWG E+D S C + G S CRG+NAIELLQEM+ RGV++ ++ LAMAACLEGHRDRH +EA L+ GPP AD RLAEAAL LFD++V AG PT YA ALKACARTAN RA+AL MLD P+ P Q EVRPWHLASA+AAYDAAGDW GA++LW EALRRGVSPRSPGY AA+ A+RAGD AA +LV+EARGL LEL
Sbjct: 132 RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVRXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------MTAVDGWGAALRLLEGVLPDVNTYNAAL-----SVVARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDSVDDGVGG--WEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSS--CRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLEL 1166
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 535 bits (1378), Expect = 9.250e-173 Identity = 404/758 (53.30%), Postives = 451/758 (59.50%), Query Frame = 3
Query: 1374 MPAAKVKXXXXXXXXXXXXXAGPKGNWEKAYQLLDGMWQDEAGAKPNKRTYDLAIQACGHGGEWELGVTLIDDMRDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWKRATEIFDEARYVRNIPPSLQIYGALLSSLADAERWADISTYFDRMAADGIVPDASATNTGVLAAAKLGDGRRALSLLEGDT----------------------------------RRWRWRLNDEGDDSSG---------GKAEGAARREEREASP-------EVSE--------SAISHAASLPALV-----------DSGKGNERGRGGADAGVRSALGGGGWEAATPSLLNSVLHALDSAGEDAAVLEAVKRGREEGVLLNPAIYRCALKASGNLGDFKEAGTLLSQMAEENLAPDIVHWNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWSADSWSRSTGWGPEQDGSP---RICEYEELYVDHGA------TAASCRGRNAIELLQEMENRGVQVCGRSFILAMAACLEGHRDRH--VEADLE---GPPEADFRLAEAALSLFDQVVEAGHRPTGSTYALALKACARTANKHRASALLTDMLDG------------------------------RKSPSPGTPGDAQAPIEVRPWHLASAVAAYDAAGDWDGARELWSEALRRGVSPRSPGYGAAIGAAVRAGDMTAAFRLVDEARGLNLEL 3308
MPAAKVK AGP GNWEKAYQLLD MWQD GAKP+K TYDL IQACGHGGEWELGVTLIDDMRDLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +WKRATEIFD+ARYV I PSLQIYGALL +LA+ ERWAD+ Y DRM ADG+ DA+ATNT VLAAA+LGDGRRALSLLEG RR R DEGD G G+ E R +R A+ E SE S+ A +V D + ER D GV GGGWE TP LLNSVL ALD ED+AVLEAVKRGRE+G+LLN +IYRCALKA GNLGD+++A +L +MAEE+L PDIVHWNH LWS DSW S GWG E+D S R E +D +CRG++AIELLQEM+ RGV++ ++ LAMAACLEGHRDRH +EA L+ GPP AD RLAEA L LFD++V AG PT YA ALKACARTAN RA+AL MLD R SP P P Q EVRPWHLAS + AYDAAGDW GA++LW EALRRGVSPRSPGY AA+ AA+RAGD AA +LV+EARGL LEL
Sbjct: 1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEGEPEALLERRQRAATAGGEKRHGEESEVRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGV-----GGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNALSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPP---QPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLEL 750
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 1.240e-10 Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 3
Query: 372 LMDAGNRRRWTEVLNILGHWEEHADRLDVKTYNIALSALSKCG 500
+M A RRRWTEVL ILGHWEE+A RLD KTYN+ALSAL KCG
Sbjct: 1 MMAAARRRRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCG 43 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig888.16990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig888.16990.1 >prot_S-dermatodea_contig888.16990.1 ID=prot_S-dermatodea_contig888.16990.1|Name=mRNA_S-dermatodea_contig888.16990.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1093bp MAPLPCVTRSSYADLAFCVASLASRQALSLPSTSNRRTKVRQRPPSCLQQback to top mRNA from alignment at S-dermatodea_contig888:7921..17580+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig888.16990.1 ID=mRNA_S-dermatodea_contig888.16990.1|Name=mRNA_S-dermatodea_contig888.16990.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=9660bp|location=Sequence derived from alignment at S-dermatodea_contig888:7921..17580+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig888:7921..17580+ >mRNA_S-dermatodea_contig888.16990.1 ID=mRNA_S-dermatodea_contig888.16990.1|Name=mRNA_S-dermatodea_contig888.16990.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=6558bp|location=Sequence derived from alignment at S-dermatodea_contig888:7921..17580+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |