mRNA_S-dermatodea_contig888.16989.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig888.16989.1
Unique NamemRNA_S-dermatodea_contig888.16989.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig888.16989.1 vs. uniprot
Match: D7FQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ88_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 7.480e-77
Identity = 125/242 (51.65%), Postives = 163/242 (67.36%), Query Frame = 1 
Query:    7 LPLLSPSAEPAPKFSGH-HGLWRSCLWESNTDDHYWEKCRRNKRLGG-KAIAFAATHVHVRMLSRLDMHAFFSFVRDGITKPITDADETGGRLLAPSSRCTCRLVKAASSEESLANGMTDSIRMKTHACIGSGKRHELESTTCSKACARARNAAPRPLAHRSCLAGCRAGLNTAWDVGCTAGGHQDCVKSATARCDYHCATYRNQFPKPTIFNTCQRSCLDVVDDTCVKAKKTFVAADSLSR 726
            LP++SPSAEPAPK+  H HG  R+  W+S +D  YWEKCR N R    KA+   A  V V +L         + +R   T+P+ + +     L       T  L +AA +++S   G T+ +R+KT AC+GSGK+HELES TC+K CA+AR  APRPLAHRSCLAGCRAG+ TAWD  C  G H+DCV+ +T RCD+HCA+YRNQFPKPTIFN C RSCLDVVD TC+K+K+ F +A++  +
Sbjct:    7 LPVISPSAEPAPKYGRHQHGARRTSFWKSESDQ-YWEKCRHNTRSRQRKAVGLTAVVVVVSLL------LLAAGLRGRRTEPVVEEEGATSSLDRTGELITSSLEEAAPADDS---GNTNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ 238
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig888.16989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ88_ECTSI7.480e-7751.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig888contigS-dermatodea_contig888:5321..7709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007040.1
Exons3
Model size747
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig888.16989.1prot_S-dermatodea_contig888.16989.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig888 5321..7709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925371.3893995-CDS-S-dermatodea_contig888:5320..56001622925371.3893995-CDS-S-dermatodea_contig888:5320..5600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig888 5321..5600 -
1694079888.1625235-CDS-S-dermatodea_contig888:5320..56001694079888.1625235-CDS-S-dermatodea_contig888:5320..5600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig888 5321..5600 -
1622925371.4097383-CDS-S-dermatodea_contig888:7111..74131622925371.4097383-CDS-S-dermatodea_contig888:7111..7413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig888 7112..7413 -
1694079888.1796086-CDS-S-dermatodea_contig888:7111..74131694079888.1796086-CDS-S-dermatodea_contig888:7111..7413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig888 7112..7413 -
1622925371.4234304-CDS-S-dermatodea_contig888:7544..77091622925371.4234304-CDS-S-dermatodea_contig888:7544..7709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig888 7545..7709 -
1694079888.1908903-CDS-S-dermatodea_contig888:7544..77091694079888.1908903-CDS-S-dermatodea_contig888:7544..7709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig888 7545..7709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig888.16989.1

>prot_S-dermatodea_contig888.16989.1 ID=prot_S-dermatodea_contig888.16989.1|Name=mRNA_S-dermatodea_contig888.16989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=249bp
MPLPLLSPSAEPAPKFSGHHGLWRSCLWESNTDDHYWEKCRRNKRLGGKA
IAFAATHVHVRMLSRLDMHAFFSFVRDGITKPITDADETGGRLLAPSSRC
TCRLVKAASSEESLANGMTDSIRMKTHACIGSGKRHELESTTCSKACARA
RNAAPRPLAHRSCLAGCRAGLNTAWDVGCTAGGHQDCVKSATARCDYHCA
TYRNQFPKPTIFNTCQRSCLDVVDDTCVKAKKTFVAADSLSRSLENEL*
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mRNA from alignment at S-dermatodea_contig888:5321..7709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig888.16989.1 ID=mRNA_S-dermatodea_contig888.16989.1|Name=mRNA_S-dermatodea_contig888.16989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2389bp|location=Sequence derived from alignment at S-dermatodea_contig888:5321..7709- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCTGCCGCTGCTCAGCCCGTCGGCAGAACCGGCACCTAAATTCTC
TGGACACCACGGATTGTGGAGGTCGTGTCTTTGGGAGAGTAATACCGACG
ACCACTACTGGGAGAAATGTCGACGAAATAAACGATTGGGGGGCAAGGCC
ATTGCGTTCGCCGCCGTTGCGGGACTCGCGCTCGTGGCGTTGGTGATCGG
ACTGCGAAGGAAATCAGAGCCCCTAAAGTGAGAAGTGAACGGTTTGGGAA
TTTCTCATTGCCTGTGTGCTGCTTGTTGCACAGCATGCATGTTGAGACAC
ACGTACACGTGCGTATGCTCTCTCGGCTCGACATGCATGCCTTTTTCTCT
TTCGTCCGTGATGGTATAACAAAACCAATCACTGACGCCGATGAGACTGG
AGGTCGTTTGCTCGCCCCGTCTTCTCGCTGCACTTGCAGGCTCGTCAAGG
CCGCTAGCTCAGAGGAGTCTCTAGCCAACGGGATGACAGACAGTATACGG
ATGAAAACGCACGCGTGTATTGGGAGCGGGAAGAGGCATGAACTAGAAAG
CACGACATGTTCGAAGGCGTGCGCTAGGGCCCGGAACGCCGCGCCAAGGT
CCAGTATTTGAAATATCGAGACACTACAGCTGTCGACTGCCATGTACAAG
TAATATGTGGTGCTTGTGAACGTATATGTACCAGGTTTACTATATTTCAC
ATTTCATCATATGTATGCAGCGTATGGGCAGCATGTAGCACGTAGATCTA
GACAGTAGAGAGCATGGAGAAATGTCACGCGTTCGTGCTCGCGTGTTCCT
TTTACACTCTATCTGAGGCACAACGACGTCACAACATTATTTCTGTCAAA
CTATCGTGGAGAACTTGTAAATTCACAGTGCGGTCGAAGCTTGAGAACGT
TAGGCGCTGGAGTCCTCACCTACATGTACAAGTATGATAGACTATACCTG
CACCCAGAAATACTTTCAGGTTGCGTTGAAACCCAGTTTGGCGCTGCCGA
AACGGAAGTGTGCCCGACAAGGCGATAATACTAATAATTCGGTCATTACT
AAATTTCATGCGTTTGTAAGAGTCGCACAAGACTGTTCCCTCGCGTTTTT
TTTGCCGGCTATGATGGAAAAGAACAACAAGAACCGAAGGCGTTTGTCTT
CATCTACGTCTGATTCCTATGAACCATATTTCTATAGTGTTTTTTCTCGA
GGAAATTGAATTTGCTACAGCGTTGGGGTGAACAGATTGAGATAGAACCT
TCGGGAATGTCCTTCCCTTGGTCCACACGAGGGGTTCGGATTGTGCAGAA
TTTTGGTTTTGCCACAAGATAATGAAATCGACGGTGGCCAAAGCTGCCTG
AACCGGTCGTTAAAAATCGAATATGCTCAGGAAAGCTCTAGCTTCACATA
ATTCATCCAATTTTCCACCGACCTATGGTTTACTCTTGGTGTTCAAGCTT
TGGGAGGACTCCCGCGTTAACACTCTCAACAACGGCGTAATTTGCATAAT
TTATGGTCACTGGCAGCTTTGAAGCTTTTGCACAGTTTCTCGTTTTTGCT
AAGGAATGTCATGTGCAGTGTGGTTCCACAGATGGTGTCGTAGTTTGTTG
TTTGTTTCCAGATTTTGAACTATGGGCAAAACTAAAACGTGTGTCGGTGA
ACGGAGGAAAACACAAAGCGCGCACCTTTTGCCTTTCTCTCTCTGCTTGT
CGTCACACCTGGGGGTGACAATCACAAGTGATATTTTTGTCGGGGGCATT
CAGTAGCAATGCTGCGCGGTGGAGGAACATGAGTGACGATGATGCAAGGC
GACGGTTTAGAGCCATTGAGGGGTTTCCCTGTTGGAGAAAAACTATAACA
CGGTTGAAGTTTTTGTTTTCCCTGAGGTTACGTGCGCTACACAGGGGGCA
TATATTAACTAATTTCCCGCTGTAAAGGAGTGCGCCTCAAAGACTACACA
GAGGGTACAAGGCCCCAACCCTGGGAAGTAGGCAAAGAGCCCTCTGCTAA
AACGATGTTTTCGACCTGTTGCATCTGATGCTGTTGAGCTCACGCATCTT
TGACTTTGGACGGGTCGTTCCCTTGTCTTTTTTGCTGTCTTGCCTTCCCT
CATTATCAGACCTCTTGCCCATCGATCGTGTCTAGCTGGATGTCGGGCTG
GGCTAAACACTGCATGGGATGTGGGGTGCACGGCAGGCGGGCACCAGGAC
TGCGTGAAGTCCGCTACCGCGCGGTGCGACTATCATTGCGCCACCTATCG
AAATCAGTTCCCGAAGCCTACCATTTTCAACACTTGCCAGCGTTCGTGTT
TGGACGTAGTGGACGACACTTGCGTAAAGGCCAAAAAAACATTTGTGGCG
GCGGACTCGCTAAGCAGATCGTTGGAGAATGAATTATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig888:5321..7709-

>mRNA_S-dermatodea_contig888.16989.1 ID=mRNA_S-dermatodea_contig888.16989.1|Name=mRNA_S-dermatodea_contig888.16989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at S-dermatodea_contig888:5321..7709- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCTGCCGCTGCTCAGCCCGTCGGCAGAACCGGCACCTAAATTCTC
TGGACACCACGGATTGTGGAGGTCGTGTCTTTGGGAGAGTAATACCGACG
ACCACTACTGGGAGAAATGTCGACGAAATAAACGATTGGGGGGCAAGGCC
ATTGCGTTCGCCGCCATGCCGCTGCCGCTGCTCAGCCCGTCGGCAGAACC
GGCACCTAAATTCTCTGGACACCACGGATTGTGGAGGTCGTGTCTTTGGG
AGAGTAATACCGACGACCACTACTGGGAGAAATGTCGACGAAATAAACGA
TTGGGGGGCAAGGCCATTGCGTTCGCCGCCACACACGTACACGTGCGTAT
GCTCTCTCGGCTCGACATGCATGCCTTTTTCTCTTTCGTCCGTGATGGTA
TAACAAAACCAATCACTGACGCCGATGAGACTGGAGGTCGTTTGCTCGCC
CCGTCTTCTCGCTGCACTTGCAGGCTCGTCAAGGCCGCTAGCTCAGAGGA
GTCTCTAGCCAACGGGATGACAGACAGTATACGGATGAAAACGCACGCGT
GTATTGGGAGCGGGAAGAGGCATGAACTAGAAAGCACGACATGTTCGAAG
GCGTGCGCTAGGGCCCGGAACGCCGCGCCAAGACACACGTACACGTGCGT
ATGCTCTCTCGGCTCGACATGCATGCCTTTTTCTCTTTCGTCCGTGATGG
TATAACAAAACCAATCACTGACGCCGATGAGACTGGAGGTCGTTTGCTCG
CCCCGTCTTCTCGCTGCACTTGCAGGCTCGTCAAGGCCGCTAGCTCAGAG
GAGTCTCTAGCCAACGGGATGACAGACAGTATACGGATGAAAACGCACGC
GTGTATTGGGAGCGGGAAGAGGCATGAACTAGAAAGCACGACATGTTCGA
AGGCGTGCGCTAGGGCCCGGAACGCCGCGCCAAGACCTCTTGCCCATCGA
TCGTGTCTAGCTGGATGTCGGGCTGGGCTAAACACTGCATGGGATGTGGG
GTGCACGGCAGGCGGGCACCAGGACTGCGTGAAGTCCGCTACCGCGCGGT
GCGACTATCATTGCGCCACCTATCGAAATCAGTTCCCGAAGCCTACCATT
TTCAACACTTGCCAGCGTTCGTGTTTGGACGTAGTGGACGACACTTGCGT
AAAGGCCAAAAAAACATTTGTGGCGGCGGACTCGCTAAGCAGATCGTTGG
AGAATGAATTATGAACCTCTTGCCCATCGATCGTGTCTAGCTGGATGTCG
GGCTGGGCTAAACACTGCATGGGATGTGGGGTGCACGGCAGGCGGGCACC
AGGACTGCGTGAAGTCCGCTACCGCGCGGTGCGACTATCATTGCGCCACC
TATCGAAATCAGTTCCCGAAGCCTACCATTTTCAACACTTGCCAGCGTTC
GTGTTTGGACGTAGTGGACGACACTTGCGTAAAGGCCAAAAAAACATTTG
TGGCGGCGGACTCGCTAAGCAGATCGTTGGAGAATGAATTATGA
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