prot_S-dermatodea_contig8841.16965.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8841.16965.1
Unique Nameprot_S-dermatodea_contig8841.16965.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length170
Homology
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BLAST of mRNA_S-dermatodea_contig8841.16965.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.650e-11
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0 
Query:   66 ASSDIVRRVLFRQPSLLGHNAQGNXXXXXXXLQDRLGMTEEAAWKFIGK 114
            ASS +VRRVLFRQPSLLGHNA G XXXXXXX QDRLGM+E AAWKFIG+
Sbjct:  507 ASSKVVRRVLFRQPSLLGHNADGXXXXXXXXXQDRLGMSEAAAWKFIGR 555
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8841.16965.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0R0_ECTSI3.650e-1183.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 109..141
e-value: 1.6
score: 17.8
coord: 72..104
e-value: 0.13
score: 21.4
coord: 17..49
e-value: 3.1
score: 16.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 67..167
e-value: 7.5E-9
score: 35.0
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 50..169
e-value: 8.9E-16
score: 59.8
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 79..167
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 79..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..139
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 140..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 161..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8841contigS-dermatodea_contig8841:182..4313 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8841.16965.1mRNA_S-dermatodea_contig8841.16965.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8841 182..4313 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8841.16965.1 ID=prot_S-dermatodea_contig8841.16965.1|Name=mRNA_S-dermatodea_contig8841.16965.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=170bp
QVGWLRTKLRFSRAEAARVVYANPGILLSSVEGSLMPKIDWLAKALQMDE
DRHNLAPKLEWLAGQASSDIVRRVLFRQPSLLGHNAQGNLAPKVQWLQDR
LGMTEEAAWKFIGKSPGFLTLSVSDTLEPKLWWLRDKLDVSLAGAAKILV
TFPAFFGLSIETSLEPKLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf