mRNA_S-dermatodea_contig8841.16965.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8841.16965.1
Unique NamemRNA_S-dermatodea_contig8841.16965.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8841.16965.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.650e-11
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:  196 ASSDIVRRVLFRQPSLLGHNAQGNXXXXXXXLQDRLGMTEEAAWKFIGK 342
            ASS +VRRVLFRQPSLLGHNA G XXXXXXX QDRLGM+E AAWKFIG+
Sbjct:  507 ASSKVVRRVLFRQPSLLGHNADGXXXXXXXXXQDRLGMSEAAAWKFIGR 555
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8841.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0R0_ECTSI3.650e-1183.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8841contigS-dermatodea_contig8841:182..4313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D7G0R0
KEGG koko:K15031,ko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-20_001360.1
Exons4
Model size510
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8841.16965.1prot_S-dermatodea_contig8841.16965.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8841 182..4313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.5178864-CDS-S-dermatodea_contig8841:181..3371622925369.5178864-CDS-S-dermatodea_contig8841:181..337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 182..337 +
1694079886.8091412-CDS-S-dermatodea_contig8841:181..3371694079886.8091412-CDS-S-dermatodea_contig8841:181..337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 182..337 +
1622925369.5309744-CDS-S-dermatodea_contig8841:1000..11231622925369.5309744-CDS-S-dermatodea_contig8841:1000..1123Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 1001..1123 +
1694079886.82088-CDS-S-dermatodea_contig8841:1000..11231694079886.82088-CDS-S-dermatodea_contig8841:1000..1123Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 1001..1123 +
1622925369.5419168-CDS-S-dermatodea_contig8841:2121..21831622925369.5419168-CDS-S-dermatodea_contig8841:2121..2183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 2122..2183 +
1694079886.831412-CDS-S-dermatodea_contig8841:2121..21831694079886.831412-CDS-S-dermatodea_contig8841:2121..2183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 2122..2183 +
1622925369.554351-CDS-S-dermatodea_contig8841:4144..43131622925369.554351-CDS-S-dermatodea_contig8841:4144..4313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 4145..4313 +
1694079886.8418298-CDS-S-dermatodea_contig8841:4144..43131694079886.8418298-CDS-S-dermatodea_contig8841:4144..4313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8841 4145..4313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8841.16965.1

>prot_S-dermatodea_contig8841.16965.1 ID=prot_S-dermatodea_contig8841.16965.1|Name=mRNA_S-dermatodea_contig8841.16965.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=170bp
QVGWLRTKLRFSRAEAARVVYANPGILLSSVEGSLMPKIDWLAKALQMDE
DRHNLAPKLEWLAGQASSDIVRRVLFRQPSLLGHNAQGNLAPKVQWLQDR
LGMTEEAAWKFIGKSPGFLTLSVSDTLEPKLWWLRDKLDVSLAGAAKILV
TFPAFFGLSIETSLEPKLW*
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mRNA from alignment at S-dermatodea_contig8841:182..4313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8841.16965.1 ID=mRNA_S-dermatodea_contig8841.16965.1|Name=mRNA_S-dermatodea_contig8841.16965.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4132bp|location=Sequence derived from alignment at S-dermatodea_contig8841:182..4313+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGGTGGCTCAGGACCAAGCTGCGTTTCTCTAGGGCGGAGGCTGC
CAGGGTCGTGTACGCCAACCCGGGGATCCTCCTAAGCAGTGTTGAGGGAA
GCCTCATGCCGAAGATCGACTGGCTGGCCAAGGCTCTCCAGATGGATGAG
GACAGGGTATTCGACATGGTTCGCAGGCGAGGGTTTTCGCTTCTTTCGGG
AGCCCCGCGTTGTCCTGTCGGGATTTCGCGTGGGAAGATAGATCCCTCTC
GGGGAAAGCTCCAAGCACAGCGATACTGTAGCCTCATCTGACGACTTGCG
GTACACAATGGCATACTAACACGTTCCAAAGAATGTGGGCGTTCCTTTAG
ATGGACGAGGACAGGGTTTTCGACATGGTTCGCAGGCGAGGTTATTCGCT
ACTTTCCGGAACCCACCCAGCGTTTTGCTGTCGGTTTTTCACGTGGGAAG
ATTCCTCCCGGGGGAAGCTCCAAATACAATTTTGCTGTAGTTTTATCTGA
TGACTTACGGCACCCAAAGCCATACCAACCAATACATTCCCAACTTTTTG
CGTTTCTTTAGATGGACGAGGGCAGGGTTTTCAACATGGTTCGCAGGCGA
GGTTTTTCGCCACGTTCCGGAACCCACCAAGCATTTTGCGGTCGAGATTT
CACGCGGGAAGATAGATCCCTCCCCCGGGGCCAGCCTCAAGCACAACCTT
ACTGTGGTGCCATCTGATTACTTACGGCACACAGAGCCATACCAACCAAA
TTTTTTCAACCTTTCCGCGTTTGTCTTTATCTTGCCAGGTACCCGATGTT
CTTTACGCTCAGCTCCCAGCACAACCTCGCACCCAAGCTCGAGTGGCTCG
CGGGCCAGGCCTCGAGCGACATCGTTCGACGGGTTCTGTTCAGGCAGCCG
TCCCTGCTGGGCCACAACGCGCAGGGGAACCTGGCACCAAAGGTGGGGTC
CGAGATGAAATACCGTTATGGAGGACCATAGGTAACAGGTCAAAATTCGT
GATAAATGTCTCCTTAGAAAATAGCGTTGGGAAAGACGGTCCAAGCTACG
CGTATCAAGGTTAACGTAAGAGTGGCGTGTTGTAAGCTTATAGGGTACAG
CAGAATGGTGTATTATTCCGGTTGATCGTCCTCCTCTGTGCTGTTGTTCT
TCTTCTTGTTCCCTTGCTTCCCCTGGGGTACACCAGTCACCTCTCGCGCT
CTAGGTGCACGGGGTGTTTTTTATGCTTCGTTTGCGTAAAGCTTGCCAGG
CTTGTTGGCGTTGCGAATTGAGCTACGGGATCATTGTCACATGTGTTCGG
GCTCCGAAATGGCATGCTTTAGTGACAAACCCACCCTTGAAGACGATGTT
TCGGGCGAGACCAGGGGTCTACCTTTTTTTGTTGGGAGGAAGTATCGCCG
AGGCTAAGGCCCGACGACAGTAAAGATTTATAAACACAGAACGAACATTG
GGGTCCAATATTCTTGGTAGAGAAAAAAGATGGCCCAATCTAACTCAGTG
GAAGCCTACGTTATATACGATGCTATGGTGTAACATTACAATTAACAGGT
CACTCTGGGAATGGGTTGTTTTTACTTGTCAGATTTTTTTATCATCTTGT
ATTCGAGCCTGTCCCACCCTTAACCCCCCCGTGATACATCTGCCTTTGAA
GCTTAAGACAGTCAGACGAAGCCAGTAGCAATACTGGAGGATAAGAAGTG
GCCTGAGATGGCTAGAATTGAAGTATTTTAGGTACAATTATAGGGGCAAA
CGCCGCCTTTGGCAAAGCAGGAAGGAACGATTGGCAATCGGCGATCGACC
GATCCTGTAGGAACAATGCTCCACCCTCCCGAGGCAACACGCGTGGTCAA
TGGGCTAATACCTAAGGCATGCAAAGCTTGAATACGCCCCCCCCACCCCC
CCCTCCCGCGCATTGTCTGCGTGCCTGTCGCCGTCCCCAGGTGCAGTGGT
TGCAGGATCGTCTGGGAATGACCGAGGAGGCGGCATGGAAGTTTATCGGA
AAGTGAGCTAACGTTAATGCTTACAAAAAATGGACCATGGTATTTATTTA
TTTTTCGGGCAAGTAACCATTTTGTCTGCTTCCTTCCAGAAACTACATTC
AAAATTTTTAATATGCTCATTCACCCTATATTATGTTTTAGATGGTGATG
AGCACTGAAACGTAACCAAAATAACATACTTTTGAGACAAATGTATATAT
AGAGCTCTATTATGTGTTCTCCAAAATAGAGTCTCCAGAGAAACATGCGA
TACTGCTTAGACATCTCACATCTCCGCCAAAGAGATAGTCGAAAACTGAT
CCTGGTCCACCTTAAACAAAAATATTAATATTTTTTCATTAATAGCGCTT
TGAAAGTTTTTTAGTTGGCGATTTAGAGCAACCGTGCCAACGCAATTTTC
CTATACGATTTATGTCACCAAAAACTGATGCCAAACAACTTGATTTTTGT
GTTGTGCGCCAAACAACTTAATCTTGCGCCTCACGGGCGTAGCCGTGGCT
GTTAATATTACTTCAAGTATATTAGTGTACCAGGCAGAGCGGAAAAAAAC
TTCCTAATTCCCCGTCCCAAAGAAAAACAAATATATGAATGTATAATAAA
ACACTTTTGAAACAACAACAATCCTCGAGGTTTCTTTTTCCATCGCTCTA
TTTCCATTCCATCTCCTCTCTGTCTCTCTGACTGTATCTTTATTAGTAGA
CTAGTATGACGTGTGGGTTTTATACATACCACTGACCGCCCTTATCCGAA
TCGTCGTATGCGGCAATGAGGGATCGATCGCTCAACCATCCAATGCCTCT
TATGTACCGCCGCCTCTTGCCTCAGACTTTTAGTATTATTTTTAGTACAA
CCTGGGCCGGCCAAGAAACCAATGTTTCGGTGGATTCGTTTTGCTCTGCT
CAATTTTTCGAGTCTGGCACTAATATTTTGACACGTGATTCGCACCTCCC
TCGCCGAGGCATTCAAAGGAGGAATTTTTTATTTTTCGTTCTGTTTTCAA
GAATTTACGATCGACCTTGTGTTTTTCCGGATTGTGGATTGGCGTTAGAT
TATTGTTCCTAGTAGGTAGCCACGGCTACGCTCGTGAGTTGTGCATTGGC
AGGGCGATATGTGGGTTGGGTTTGGAAGATACGGCGTGGAGACCCACGGC
AGGCGTAGGAAGCCGAGCGTGGTCGCTCAACGCTAAAATCAAAGTTGTTT
AGCGCTCAACACAAACATCAAAGTTTTTTTGGCATCACTCCAAAATCGTA
CAGGAGATTTGTTGGGAAAAAACAAAAATCGTATAGGAAATAGTGTGGAA
AAATTTCAAAGCCATATTAATCAGTAAGGATTTTTCGTCTTGGTATGATA
TTTGTTTATTTATTTTGTATTGTCTCTCATCTTGCCAGTATACAATAGCG
GGATCGGCAACCATTCGGCGGACCGGTCGGTTGCAAGCGTGGTTGGAAAA
AAAATGAGGTCCGGAAAGAAATACAGGGGTAAAGCCAGGGTTTGAACGCC
TACACGCGTGAACGCTTGCTCTGCTCCACCGAGGCGCCGCAGCTCGCGGC
CCAATGAGGCTAGGTCAGTTCTCCGCCACACTGCTCTGACCCTTTTCTTC
CAGGGACTTCGACATGACCGGCTATGGTCAGACGCAGTACCGACCGCCGA
CCGATTGGCTCATGAAAAACTTCCACAGTAACTCAACCGAAAATATCACA
GGACCAACCGCTAACCGGTTGGCAGCGCATGGAAAAATCTCACAGTTATA
CGTATTATACCCTGATCGTGAACCGGCTAATGCGCCGTCGTGTGAACTAA
AATGACCTGTGTACTCGCCGGCCATGTCGAAGAAAACAATAATGAAGGAG
AAATTCAATCACGTTTTTCGCACCATCCCTCTTCACCCGAACCCAAAACG
CTGACCCACATCCGTGTACGTGCCGTGGAACAACTACGACAAAAACGCCT
GCGGCGATATCAGATCCCCGGGGTTTCTAACGCTGAGCGTGTCTGACACG
CTGGAGCCGAAGCTGTGGTGGCTGCGCGACAAGCTGGACGTCAGCCTGGC
CGGCGCGGCGAAAATTCTGGTAACTTTCCCGGCCTTCTTCGGCCTGAGCA
TCGAGACTTCCCTGGAGCCCAAGCTGTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8841:182..4313+

>mRNA_S-dermatodea_contig8841.16965.1 ID=mRNA_S-dermatodea_contig8841.16965.1|Name=mRNA_S-dermatodea_contig8841.16965.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at S-dermatodea_contig8841:182..4313+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGGTGGCTCAGGACCAAGCTGCGTTTCTCTAGGGCGGAGGCTGC
CAGGGTCGTGTACGCCAACCCGGGGATCCTCCTAAGCAGTGTTGAGGGAA
GCCTCATGCCGAAGATCGACTGGCTGGCCAAGGCTCTCCAGATGGATGAG
GACAGGCAGGTGGGGTGGCTCAGGACCAAGCTGCGTTTCTCTAGGGCGGA
GGCTGCCAGGGTCGTGTACGCCAACCCGGGGATCCTCCTAAGCAGTGTTG
AGGGAAGCCTCATGCCGAAGATCGACTGGCTGGCCAAGGCTCTCCAGATG
GATGAGGACAGGCACAACCTCGCACCCAAGCTCGAGTGGCTCGCGGGCCA
GGCCTCGAGCGACATCGTTCGACGGGTTCTGTTCAGGCAGCCGTCCCTGC
TGGGCCACAACGCGCAGGGGAACCTGGCACCAAAGCACAACCTCGCACCC
AAGCTCGAGTGGCTCGCGGGCCAGGCCTCGAGCGACATCGTTCGACGGGT
TCTGTTCAGGCAGCCGTCCCTGCTGGGCCACAACGCGCAGGGGAACCTGG
CACCAAAGGTGCAGTGGTTGCAGGATCGTCTGGGAATGACCGAGGAGGCG
GCATGGAAGTTTATCGGAAAGTGCAGTGGTTGCAGGATCGTCTGGGAATG
ACCGAGGAGGCGGCATGGAAGTTTATCGGAAAATCCCCGGGGTTTCTAAC
GCTGAGCGTGTCTGACACGCTGGAGCCGAAGCTGTGGTGGCTGCGCGACA
AGCTGGACGTCAGCCTGGCCGGCGCGGCGAAAATTCTGGTAACTTTCCCG
GCCTTCTTCGGCCTGAGCATCGAGACTTCCCTGGAGCCCAAGCTGTGGTG
AATCCCCGGGGTTTCTAACGCTGAGCGTGTCTGACACGCTGGAGCCGAAG
CTGTGGTGGCTGCGCGACAAGCTGGACGTCAGCCTGGCCGGCGCGGCGAA
AATTCTGGTAACTTTCCCGGCCTTCTTCGGCCTGAGCATCGAGACTTCCC
TGGAGCCCAAGCTGTGGTGA
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