mRNA_S-dermatodea_contig88011.16941.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88011.16941.1
Unique NamemRNA_S-dermatodea_contig88011.16941.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: D7G3G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 8.900e-15
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 99
            SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV
Sbjct:  256 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 288
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: D6PJ98_9ZZZZ (GF13915 n=2 Tax=environmental samples TaxID=151659 RepID=D6PJ98_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 3.040e-9
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK 111
            SF  +SPNG+Y+L GTLDD LRLW + + ++CVKTY+
Sbjct:   96 SFVKYSPNGRYILVGTLDDRLRLWNVSNPSRCVKTYQ 132
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: A0A367IQ57_RHIST (WD repeat-containing protein 5 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IQ57_RHIST)

HSP 1 Score: 54.3 bits (129), Expect = 4.500e-8
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK 111
            SF  FSPNGKY+LA TLD++LRLW   H  KC+KTY+
Sbjct:   23 SFVKFSPNGKYILASTLDNTLRLWNY-HTGKCLKTYR 58
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: A0A7S3Y1M0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1M0_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 9.440e-8
Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK 111
            S+  F+PNGK++LA TLD ++RLWQ  + +KCVKTY+
Sbjct:  125 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYR 161
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: UPI000644996E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644996E)

HSP 1 Score: 54.3 bits (129), Expect = 1.860e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTY 108
            S+S+FSPNGKYVLAGTLD  LRLW    D K +KTY
Sbjct:  222 SYSSFSPNGKYVLAGTLDSKLRLWNYS-DNKVMKTY 256
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: B7GA07_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA07_PHATC)

HSP 1 Score: 53.1 bits (126), Expect = 4.850e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGH--DTKCVKTYK 111
            S  T+SPNGKYVLAGTLD  LRLW +     +KC KTY+
Sbjct:  245 SHITYSPNGKYVLAGTLDSMLRLWPVNRIGSSKCAKTYQ 283
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: A0A433CX85_9FUNG (Putative WD-repeat protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CX85_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 8.370e-7
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK 111
            SF  FSPNGKY+LA T D+++RLW   H  KC+KTYK
Sbjct:  141 SFVKFSPNGKYILASTQDNTIRLWNY-HTGKCLKTYK 176
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: A0A1E7FCC1_9STRA (WD40 repeat-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCC1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.910e-7
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLW--QIGHDTKCVKTY 108
            S  T+SPNGKYVLAGTLD +LRLW   +    KC KTY
Sbjct:  201 SHVTYSPNGKYVLAGTLDSALRLWPMSVSGKAKCAKTY 238
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: A0A6G1GDU0_9PEZI (WD40 repeat-like protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GDU0_9PEZI)

HSP 1 Score: 52.4 bits (124), Expect = 9.070e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   13 FSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK 111
            FSPNGK+VLA TLD S+RLW  G   +C+KTY+
Sbjct:  342 FSPNGKFVLAWTLDSSIRLWDYGERRRCLKTYQ 374
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BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Match: A0A7S2AWI0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWI0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 17/37 (45.95%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK 111
            S+  +SPNG+++L  TLDD++RLW   + ++C+KTY+
Sbjct:  217 SYVKYSPNGRFILVSTLDDTIRLWNASNPSRCIKTYR 253
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88011.16941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G6_ECTSI8.900e-15100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D6PJ98_9ZZZZ3.040e-959.46GF13915 n=2 Tax=environmental samples TaxID=151659... [more]
A0A367IQ57_RHIST4.500e-864.86WD repeat-containing protein 5 (Fragment) n=1 Tax=... [more]
A0A7S3Y1M0_HETAK9.440e-856.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000644996E1.860e-769.44hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
B7GA07_PHATC4.850e-761.54Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A433CX85_9FUNG8.370e-762.16Putative WD-repeat protein n=1 Tax=Jimgerdemannia ... [more]
A0A1E7FCC1_9STRA8.910e-763.16WD40 repeat-like protein n=1 Tax=Fragilariopsis cy... [more]
A0A6G1GDU0_9PEZI9.070e-763.64WD40 repeat-like protein n=1 Tax=Eremomyces bilate... [more]
A0A7S2AWI0_9STRA1.230e-645.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88011contigS-dermatodea_contig88011:25..138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6e-12
Seed eggNOG ortholog2880.D7G3G6
Preferred nameWDR5
KEGG koko:K14963
KEGG Pathwayko04934,map04934
GOsGO:0000003,GO:0000123,GO:0000151,GO:0001501,GO:0001654,GO:0002682,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005815,GO:0005856,GO:0005929,GO:0006109,GO:0006111,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007482,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035216,GO:0035295,GO:0035947,GO:0035948,GO:0036064,GO:0036211,GO:0042054,GO:0042176,GO:0042393,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043414,GO:0043543,GO:0043687,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044545,GO:0044665,GO:0044666,GO:0044782,GO:0045595,GO:0045637,GO:0045652,GO:0045722,GO:0045732,GO:0045862,GO:0045893,GO:0045913,GO:0045935,GO:0045944,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0060271,GO:0060429,GO:0061136,GO:0061458,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140034,GO:0140096,GO:1900402,GO:1901564,GO:1901800,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903706,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.6815758-CDS-S-dermatodea_contig88011:24..1381622925367.6815758-CDS-S-dermatodea_contig88011:24..138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88011 25..138 +
1694079885.6069145-CDS-S-dermatodea_contig88011:24..1381694079885.6069145-CDS-S-dermatodea_contig88011:24..138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88011 25..138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88011.16941.1prot_S-dermatodea_contig88011.16941.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88011 25..138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88011.16941.1

>prot_S-dermatodea_contig88011.16941.1 ID=prot_S-dermatodea_contig88011.16941.1|Name=mRNA_S-dermatodea_contig88011.16941.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
SFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKTYK*
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mRNA from alignment at S-dermatodea_contig88011:25..138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88011.16941.1 ID=mRNA_S-dermatodea_contig88011.16941.1|Name=mRNA_S-dermatodea_contig88011.16941.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at S-dermatodea_contig88011:25..138+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCTTCTCGACTTTTTCCCCCAACGGCAAGTACGTCCTGGCGGGCACTCT
CGACGACTCGCTTCGGCTGTGGCAGATCGGGCACGACACGAAATGCGTCA
AGACCTACAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig88011:25..138+

>mRNA_S-dermatodea_contig88011.16941.1 ID=mRNA_S-dermatodea_contig88011.16941.1|Name=mRNA_S-dermatodea_contig88011.16941.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig88011:25..138+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCTTCTCGACTTTTTCCCCCAACGGCAAGTACGTCCTGGCGGGCACTCT
CGACGACTCGCTTCGGCTGTGGCAGATCGGGCACGACACGAAATGCGTCA
AGACCTACAAGTGATCCTTCTCGACTTTTTCCCCCAACGGCAAGTACGTC
CTGGCGGGCACTCTCGACGACTCGCTTCGGCTGTGGCAGATCGGGCACGA
CACGAAATGCGTCAAGACCTACAAGTGA
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