mRNA_S-dermatodea_contig87788.16923.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87788.16923.1
Unique NamemRNA_S-dermatodea_contig87788.16923.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.880e-22
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYT VSRATGPSNVRVI
Sbjct: 1318 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTGVSRATGPSNVRVI 1364
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5KMJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.570e-22
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYT VSRATGPSNVRV+
Sbjct:  644 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTTVSRATGPSNVRVV 690
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5JCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.500e-22
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNV VI
Sbjct: 1225 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVMVI 1271
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.790e-22
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEGRLIIHQARHRHA VHWLYTAVSRATGPSNVRVI
Sbjct:  985 SCTVHAVQGRTVEGRLIIHQARHRHAGVHWLYTAVSRATGPSNVRVI 1031
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.530e-22
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNV VI
Sbjct: 1064 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVWVI 1110
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5JTS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.220e-21
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEG+LIIHQARH HADVHWLYTAVSRATGPSNVRVI
Sbjct: 1101 SCTVHAVQGRTVEGKLIIHQARHPHADVHWLYTAVSRATGPSNVRVI 1147
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.660e-21
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEG LIIHQARHRHADVHWLYTAVSRATGPS+VRVI
Sbjct: 1255 SCTVHAVQGRTVEGTLIIHQARHRHADVHWLYTAVSRATGPSSVRVI 1301
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BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5KCL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.910e-21
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    4 CTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            CTVHAVQGRTVEGRLIIHQARH HA+VHWLYTAVSRATGPSNVRVI
Sbjct:  640 CTVHAVQGRTVEGRLIIHQARHFHAEVHWLYTAVSRATGPSNVRVI 685
[Close]
BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.080e-20
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            +CTVHAVQGRTVEGRLIIHQARH HADVHWLYTAVSRATGPSNV VI
Sbjct: 1290 ACTVHAVQGRTVEGRLIIHQARHFHADVHWLYTAVSRATGPSNVMVI 1336
[Close]
BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.120e-20
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI 141
            SCTVHAVQGRTVEGRLIIHQARH +ADV+W+YTA+SRATGPSNVRVI
Sbjct:  655 SCTVHAVQGRTVEGRLIIHQARHPYADVYWIYTAISRATGPSNVRVI 701
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87788.16923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2B8_9PHAE1.880e-2297.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMJ7_9PHAE2.570e-2295.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCI8_9PHAE3.500e-2297.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LNU8_9PHAE4.790e-2297.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV89_ECTSI6.530e-2297.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTS3_9PHAE1.220e-2195.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE1.660e-2195.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCL4_9PHAE7.910e-2195.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE1.080e-2093.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWL4_9PHAE5.120e-2089.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87788contigS-dermatodea_contig87788:273..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.1e-18
Seed eggNOG ortholog2880.D7FV89
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925366.4077713-CDS-S-dermatodea_contig87788:272..4131622925366.4077713-CDS-S-dermatodea_contig87788:272..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87788 273..413 +
1694079884.7490988-CDS-S-dermatodea_contig87788:272..4131694079884.7490988-CDS-S-dermatodea_contig87788:272..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87788 273..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87788.16923.1prot_S-dermatodea_contig87788.16923.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87788 273..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87788.16923.1

>prot_S-dermatodea_contig87788.16923.1 ID=prot_S-dermatodea_contig87788.16923.1|Name=mRNA_S-dermatodea_contig87788.16923.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=47bp
SCTVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVRVI
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mRNA from alignment at S-dermatodea_contig87788:273..413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87788.16923.1 ID=mRNA_S-dermatodea_contig87788.16923.1|Name=mRNA_S-dermatodea_contig87788.16923.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at S-dermatodea_contig87788:273..413+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCATGCACCGTACACGCCGTCCAAGGCCGTACGGTGGAAGGGAGGTTGAT
CATACATCAGGCCCGGCACCGTCACGCTGACGTCCACTGGCTGTACACGG
CTGTAAGCAGAGCGACCGGACCCTCGAACGTCAGGGTCATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig87788:273..413+

>mRNA_S-dermatodea_contig87788.16923.1 ID=mRNA_S-dermatodea_contig87788.16923.1|Name=mRNA_S-dermatodea_contig87788.16923.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at S-dermatodea_contig87788:273..413+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCATGCACCGTACACGCCGTCCAAGGCCGTACGGTGGAAGGGAGGTTGAT
CATACATCAGGCCCGGCACCGTCACGCTGACGTCCACTGGCTGTACACGG
CTGTAAGCAGAGCGACCGGACCCTCGAACGTCAGGGTCATCTCATGCACC
GTACACGCCGTCCAAGGCCGTACGGTGGAAGGGAGGTTGATCATACATCA
GGCCCGGCACCGTCACGCTGACGTCCACTGGCTGTACACGGCTGTAAGCA
GAGCGACCGGACCCTCGAACGTCAGGGTCATC
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