mRNA_S-dermatodea_contig87668.16916.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87668.16916.1
Unique NamemRNA_S-dermatodea_contig87668.16916.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87668.16916.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.080e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 VFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD 264
            VFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD
Sbjct: 1295 VFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD 1382
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BLAST of mRNA_S-dermatodea_contig87668.16916.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.410e-44
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 VFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD 264
            V VL PVGKNSRTLV SVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD
Sbjct:  168 VIVLTPVGKNSRTLVNSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD 255
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BLAST of mRNA_S-dermatodea_contig87668.16916.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.640e-15
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 VFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDA 213
            +FVLPP  KNS  L KS IG+VV HAK +RT GP+AVM+VIGRRLM  HL+ NYK A ++ Q A+    DA
Sbjct: 1402 IFVLPPECKNSEALKKSDIGLVVTHAKSDRTKGPYAVMMVIGRRLMRKHLEANYKDARSQVQKAQTNLADA 1472
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87668.16916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE4.080e-46100.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KG30_9PHAE2.410e-4496.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKZ5_ECTSI4.640e-1559.15PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87668contigS-dermatodea_contig87668:190..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925365.6133437-CDS-S-dermatodea_contig87668:190..3571622925365.6133437-CDS-S-dermatodea_contig87668:190..357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87668 191..357 -
1694079884.1890974-CDS-S-dermatodea_contig87668:190..3571694079884.1890974-CDS-S-dermatodea_contig87668:190..357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87668 191..357 -
1622925365.6236722-CDS-S-dermatodea_contig87668:517..6141622925365.6236722-CDS-S-dermatodea_contig87668:517..614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87668 518..614 -
1694079884.1997168-CDS-S-dermatodea_contig87668:517..6141694079884.1997168-CDS-S-dermatodea_contig87668:517..614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87668 518..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87668.16916.1prot_S-dermatodea_contig87668.16916.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87668 191..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87668.16916.1

>prot_S-dermatodea_contig87668.16916.1 ID=prot_S-dermatodea_contig87668.16916.1|Name=mRNA_S-dermatodea_contig87668.16916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
VFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHL
QENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDD
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mRNA from alignment at S-dermatodea_contig87668:190..614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87668.16916.1 ID=mRNA_S-dermatodea_contig87668.16916.1|Name=mRNA_S-dermatodea_contig87668.16916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at S-dermatodea_contig87668:190..614- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTTTGTCCTCCCACCGGTCGGAAAAAACTCCAGGACCCTGGTCAAGAG
CGTAATTGGGATGGTGGTGAACCACGCAAAGGATGAGCGGACGACAGGTA
GGTCTTTTTTTTTTGATGGTGCTAGAAAATTGGGTATTGTATTTGCAAGT
ATTGTCACGAGTATTGTCGTCTCATTTGCGCTTACTTTTTTCCGACCGAT
GGTGTTGTTAGTGGTAGCGCGTGCCACTCAATCGATTTGTCCATTTTCAA
TTCACAGGTCCGTTTGCGGTGATGCTCGTGATCGGGCGACGGTTGATGAC
AATGCACCTCCAAGAAAACTACAAAGCGGCGTGTGCCGAACAACAGCTGG
CGCGTGAGCAACAGAGAGATGCAGAGGGCCGACTCTCGAAGGCGATAGAT
TCAGATGAGTTCAGCGAAGACGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87668:190..614-

>mRNA_S-dermatodea_contig87668.16916.1 ID=mRNA_S-dermatodea_contig87668.16916.1|Name=mRNA_S-dermatodea_contig87668.16916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig87668:190..614- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTTTGTCCTCCCACCGGTCGGAAAAAACTCCAGGACCCTGGTCAAGAG
CGTAATTGGGATGGTGGTGAACCACGCAAAGGATGAGCGGACGACAGGTG
TTTGTCCTCCCACCGGTCGGAAAAAACTCCAGGACCCTGGTCAAGAGCGT
AATTGGGATGGTGGTGAACCACGCAAAGGATGAGCGGACGACAGGTCCGT
TTGCGGTGATGCTCGTGATCGGGCGACGGTTGATGACAATGCACCTCCAA
GAAAACTACAAAGCGGCGTGTGCCGAACAACAGCTGGCGCGTGAGCAACA
GAGAGATGCAGAGGGCCGACTCTCGAAGGCGATAGATTCAGATGAGTTCA
GCGAAGACGACGTCCGTTTGCGGTGATGCTCGTGATCGGGCGACGGTTGA
TGACAATGCACCTCCAAGAAAACTACAAAGCGGCGTGTGCCGAACAACAG
CTGGCGCGTGAGCAACAGAGAGATGCAGAGGGCCGACTCTCGAAGGCGAT
AGATTCAGATGAGTTCAGCGAAGACGAC
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