mRNA_S-dermatodea_contig87534.16897.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87534.16897.1
Unique NamemRNA_S-dermatodea_contig87534.16897.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A6H5J742_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J742_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.180e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL
Sbjct:  404 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 449
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A836CH70_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH70_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.340e-17
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            A+IIWIIGEYAERIDNADEQL+HFLETFE+ESA+VQLQLLTATVKL
Sbjct:  454 AAIIWIIGEYAERIDNADEQLDHFLETFEDESADVQLQLLTATVKL 499
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: D8T384_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T384_SELML)

HSP 1 Score: 75.9 bits (185), Expect = 6.840e-15
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE+A+VQLQLLTATVKL
Sbjct:  436 ASMIWIIGEYAERIDNADELLEGFLETFPEETAQVQLQLLTATVKL 481
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A6S7NGJ0_LACSI (B2-adapt-app_C domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7NGJ0_LACSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE A+VQLQLLTATVKL
Sbjct:  504 ASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKL 549
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A7N0VFT3_KALFE (Beta-adaptin-like protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0VFT3_KALFE)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE A+VQLQLLTATVKL
Sbjct:  446 ASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKL 491
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: B8LNI5_PICSI (Beta-adaptin-like protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LNI5_PICSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE A+VQLQLLTATVKL
Sbjct:  446 ASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKL 491
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A7N0RDG1_KALFE (Beta-adaptin-like protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RDG1_KALFE)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EESA+VQLQLLTA VKL
Sbjct:  446 ASMIWIIGEYAERIDNADELLESFLETFSEESAQVQLQLLTAIVKL 491
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A2U1QAX8_ARTAN (Beta-adaptin-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QAX8_ARTAN)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE A+VQLQLLTATVKL
Sbjct:  446 ASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKL 491
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A2U1LHW5_ARTAN (Beta-adaptin-like protein n=3 Tax=Asteroideae TaxID=102804 RepID=A0A2U1LHW5_ARTAN)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE A+VQLQLLTATVKL
Sbjct:  446 ASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKL 491
[Close]
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Match: A0A6S7NQJ3_LACSI (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7NQJ3_LACSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL 138
            AS+IWIIGEYAERIDNADE LE FLETF EE A+VQLQLLTATVKL
Sbjct:  423 ASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKL 468
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87534.16897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J742_9PHAE3.180e-19100.00B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A836CH70_9STRA1.340e-1791.30Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
D8T384_SELML6.840e-1586.96Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A6S7NGJ0_LACSI9.340e-1586.96B2-adapt-app_C domain-containing protein n=3 Tax=L... [more]
A0A7N0VFT3_KALFE9.340e-1586.96Beta-adaptin-like protein n=1 Tax=Kalanchoe fedtsc... [more]
B8LNI5_PICSI9.340e-1586.96Beta-adaptin-like protein n=1 Tax=Picea sitchensis... [more]
A0A7N0RDG1_KALFE9.340e-1586.96Beta-adaptin-like protein n=1 Tax=Kalanchoe fedtsc... [more]
A0A2U1QAX8_ARTAN9.340e-1586.96Beta-adaptin-like protein n=1 Tax=Artemisia annua ... [more]
A0A2U1LHW5_ARTAN9.340e-1586.96Beta-adaptin-like protein n=3 Tax=Asteroideae TaxI... [more]
A0A6S7NQJ3_LACSI9.340e-1586.96Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87534contigS-dermatodea_contig87534:399..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue8.4e-16
Seed eggNOG ortholog2880.D8LDW2
KEGG koko:K11825,ko:K12392
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,map04142,map04144,map04721,map04961,map05016
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005886,GO:0005905,GO:0005911,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0008150,GO:0009267,GO:0009506,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0012505,GO:0012506,GO:0012510,GO:0016020,GO:0016043,GO:0016050,GO:0022402,GO:0030054,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030587,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031152,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032502,GO:0032991,GO:0033298,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045334,GO:0048475,GO:0048856,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0055044,GO:0061640,GO:0071496,GO:0071840,GO:0071944,GO:0090702,GO:0097708,GO:0098588,GO:0098630,GO:0098743,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1903047
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.3350592-CDS-S-dermatodea_contig87534:398..5361622925364.3350592-CDS-S-dermatodea_contig87534:398..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87534 399..536 +
1694079883.4002488-CDS-S-dermatodea_contig87534:398..5361694079883.4002488-CDS-S-dermatodea_contig87534:398..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87534 399..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87534.16897.1prot_S-dermatodea_contig87534.16897.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87534 399..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87534.16897.1

>prot_S-dermatodea_contig87534.16897.1 ID=prot_S-dermatodea_contig87534.16897.1|Name=mRNA_S-dermatodea_contig87534.16897.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
ASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKL
back to top

mRNA from alignment at S-dermatodea_contig87534:399..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87534.16897.1 ID=mRNA_S-dermatodea_contig87534.16897.1|Name=mRNA_S-dermatodea_contig87534.16897.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig87534:399..536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAGCATAATCTGGATCATCGGCGAGTACGCCGAGCGCATCGACAATGC
GGACGAGCAGCTGGAGCACTTCCTCGAGACGTTCGAGGAGGAATCGGCCG
AGGTGCAGCTGCAGCTCCTCACTGCCACCGTAAAGCTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig87534:399..536+

>mRNA_S-dermatodea_contig87534.16897.1 ID=mRNA_S-dermatodea_contig87534.16897.1|Name=mRNA_S-dermatodea_contig87534.16897.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig87534:399..536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAGCATAATCTGGATCATCGGCGAGTACGCCGAGCGCATCGACAATGC
GGACGAGCAGCTGGAGCACTTCCTCGAGACGTTCGAGGAGGAATCGGCCG
AGGTGCAGCTGCAGCTCCTCACTGCCACCGTAAAGCTGGCGAGCATAATC
TGGATCATCGGCGAGTACGCCGAGCGCATCGACAATGCGGACGAGCAGCT
GGAGCACTTCCTCGAGACGTTCGAGGAGGAATCGGCCGAGGTGCAGCTGC
AGCTCCTCACTGCCACCGTAAAGCTG
back to top