mRNA_S-dermatodea_contig8750.16896.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8750.16896.1
Unique NamemRNA_S-dermatodea_contig8750.16896.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: D8LM18_ECTSI (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM18_ECTSI)

HSP 1 Score: 819 bits (2116), Expect = 2.840e-289
Identity = 406/467 (86.94%), Postives = 440/467 (94.22%), Query Frame = 1
Query:   10 QDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVGENDVAETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHADYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG 1410
            ++VLRQLSVLAY+ARRLGPVREIPIIMYLVSAMFDTLRNIDEFM+TSMW SCR YI+RV DLL+SRPELTLGQ GNEVVADL+QAGTGV+V E++VA+ LAEVEKTG+LKVVGSLS YM+RLGDEYTKSLQ+INPHTQEYIRRLKDESVVV+LA KVQ YYERQ EM + ADLALLQAEHLYYQHESIARAVHKAQ+FTN++GK EDLHPACTVASA+APS+G LD++  HP AFLGQPSVDH++ADYTEQL+ LCVTVYQHGDDRCRTRAMLCHITHHALHDRF+PARDLLLMSHLQDNISQAD++TQILYNRMMV LGLCAFRKGL++DAHDCLRDVCSSRVKELLAQG+QMNRFQ       DK PEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRV+SKHFRRY+DIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG
Sbjct:  359 KEVLRQLSVLAYIARRLGPVREIPIIMYLVSAMFDTLRNIDEFMETSMWKSCREYISRVADLLESRPELTLGQMGNEVVADLIQAGTGVDVDESEVADVLAEVEKTGVLKVVGSLSQYMIRLGDEYTKSLQNINPHTQEYIRRLKDESVVVDLAAKVQAYYERQGEMSVVADLALLQAEHLYYQHESIARAVHKAQSFTNKFGKTEDLHPACTVASASAPSDGALDVTKAHPGAFLGQPSVDHEYADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQ-------DKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG 818          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A835YUE3_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE3_9STRA)

HSP 1 Score: 566 bits (1460), Expect = 9.190e-190
Identity = 293/469 (62.47%), Postives = 352/469 (75.05%), Query Frame = 1
Query:   10 QDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVG--ENDVAETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHADYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG 1410
            +DVLRQL+ LAYV+RR GP RE+P++M+ V+AMFDTLR+ID++M+T+MW +C   + RV   LD  P+L LG    + +ADL  A    +    E D A   A  + TG +K VG+L++++ RL +EYTKSLQ INPHT EYI RLKDES +V+LAG +QGYY R  +    A +ALLQ EHLYY+H+SIA AVH++QAFT  +G    LHPAC     T P+    D +  HPAA LG P+V+    DY   +R LCV +Y+HG DR +TRAMLCHITHHALH RF+ ARDLLLMSHLQDNIS  DV TQILYNRMMV LGLCAFR GL+ DAHDCLRDVCSSRVKELLAQGIQ NRFQ       +K PEQEKAERRRQ PYHMHINLDLLECCHLT+AML EVP MA+E  E+RRR ISK FRR++D F+ QVFTGPPENIRDHVIA AK LM+GDW++C+D+ILG
Sbjct:  368 RDVLRQLAALAYVSRRFGPARELPVLMHTVAAMFDTLRSIDDYMETAMWKNCHATLTRVVGCLDECPDLRLGSMTADDMADLQAALPPKDKATEEEDEASAAAPQQTTGTVKAVGNLATFVQRLEEEYTKSLQKINPHTAEYILRLKDESAIVQLAGAIQGYYVRAGDFDRAATVALLQVEHLYYKHDSIALAVHRSQAFTAVYGSPAMLHPACL---GTGPAATSADYAVVHPAAALGAPTVEVVPMDYAALMRDLCVFLYKHGGDRAKTRAMLCHITHHALHGRFHAARDLLLMSHLQDNISMVDVDTQILYNRMMVTLGLCAFRLGLIADAHDCLRDVCSSRVKELLAQGIQQNRFQ-------EKNPEQEKAERRRQMPYHMHINLDLLECCHLTAAMLREVPTMARERGEIRRRHISKLFRRHMDNFDHQVFTGPPENIRDHVIAGAKSLMQGDWRKCADMILG 826          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A7S2BS49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BS49_9STRA)

HSP 1 Score: 496 bits (1277), Expect = 1.500e-166
Identity = 261/474 (55.06%), Postives = 329/474 (69.41%), Query Frame = 1
Query:   10 QDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVGENDVAETLAEVEK-------TGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHADYTEQLRVLCV-TVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLIL 1407
            +++ R LSVLA  ARR     EIP + +LVS+ FD  R++D ++D   W SC  +++RV ++L+S+  L LG  G + +AD++ A  G      +  E  AE  K          +K++G+L +++ RL +EYTK+L +INPHT EY+ RL+ E+ +  L    Q YYER  +MG  A +ALL+ EH YY+H+SIA AV KAQ F  +WG+  DLHPAC   S TA  +  +   T HPAA  G+P++D    D    ++ LC   VY+HGDDR RTRAMLCHI HHALHDRFY ARDLLLMSHLQ+NI   DV TQIL+NR MV+LGLCAFR GL+ +AH CL D+CSSR KELLAQG+Q  R+        DK PEQEKAERRRQTPYHMHINL+LLE CHLT+AMLLEVPNMA E    R RVIS+HFR+Y+D F+RQVFTGPPEN+RDHV+ AAK L  GDWKRC+DLIL
Sbjct:  110 REINRNLSVLASAARRFSAKIEIPALFHLVSSYFDAQRDMDSYLDFKTWRSCYNHLSRVVNILNSQENLVLGMFGEDDMADMVLAQQGALKDLPEEEEEPAEEAKGDGDGEDENTIKIIGNLVTFVKRLEEEYTKALIAINPHTSEYVTRLRMEAQLTHLCATTQQYYERVGDMGQAAVMALLRIEHTYYKHDSIAEAVFKAQKFAEKWGQYADLHPACL--SPTAALSSEVKPETLHPAAMGGKPAIDAVFEDQAVLIKELCHRVVYKHGDDRTRTRAMLCHIAHHALHDRFYDARDLLLMSHLQENIGHTDVTTQILFNRAMVMLGLCAFRLGLIFEAHQCLSDICSSRYKELLAQGVQSMRYS-------DKNPEQEKAERRRQTPYHMHINLELLEGCHLTAAMLLEVPNMATEELSERPRVISRHFRKYMDFFDRQVFTGPPENVRDHVLTAAKSLTTGDWKRCADLIL 574          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A7S2HV13_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV13_9STRA)

HSP 1 Score: 489 bits (1258), Expect = 2.590e-160
Identity = 252/467 (53.96%), Postives = 331/467 (70.88%), Query Frame = 1
Query:   10 QDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVGENDVAETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHADYTEQLRVLCVTV-YQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLIL 1407
            +++++ L++L  V ++ GP  EIP + +LVS+ FD  RN+D+FMD  +W +C G++ R++ +L+  PEL L   G + +AD++ A  G      +V E     E    ++++G+L +++ RL +EYTK+LQ INPHT EY+ RL+ ES +V+L   VQ YYER  +M   A +ALL  EH+YY H+SIA AV KAQ F  +WG   DLHPAC ++S     +G  D ++ HPA+  G+P++     D    ++  C  V Y+HGDDR RTRAMLCHI HHA HDRFY ARDLLLMSHLQ++I  ADV TQIL+NR MV+LGLCAFR GL+ DAH CL D+CSSRVKELLAQG+Q  R+        +K PEQE AERRRQTPYHMHINLDLLE CHLT+AMLLEVPNMA E    R RVIS+HFR+++D + RQVFTGPPEN+RDHV+AAAK L  G+WK+C++LIL
Sbjct:  328 KELIKNLNMLCQVTKKFGPRCEIPALCHLVSSFFDMQRNMDDFMDLPIWKTCHGHMMRISQILNENPELVLTSIGADDIADMILAQQG---NLEEVKEEPKVDEDANKIQIIGNLVNFVNRLDEEYTKALQKINPHTVEYVVRLRMESQLVKLCTTVQQYYERIEDMKNAASVALLCIEHVYYMHDSIAAAVFKAQKFAEKWGAYSDLHPAC-MSSDAGSEDGKFDAASVHPASIGGKPTITDKLEDVGAFIQEQCHRVIYKHGDDRTRTRAMLCHIAHHAAHDRFYEARDLLLMSHLQEHIGHADVHTQILFNRAMVMLGLCAFRAGLIWDAHQCLSDICSSRVKELLAQGLQSMRYS-------EKNPEQENAERRRQTPYHMHINLDLLEGCHLTAAMLLEVPNMATEDVSERPRVISRHFRKHMDFYERQVFTGPPENVRDHVLAAAKALTTGEWKKCTELIL 783          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A7S4E4E4_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4E4_9STRA)

HSP 1 Score: 474 bits (1221), Expect = 4.500e-155
Identity = 250/489 (51.12%), Postives = 325/489 (66.46%), Query Frame = 1
Query:   10 QDVLRQLSVLAYVAR-RLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVGE-------------NDVAETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDH-DHADYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTEL--------RRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLIL 1407
            +D+ + L VLA  A+ + G  RE+   M+L+++ FD+ R ID++MD   W +C G + +   +L++ P+ TLG   ++ +ADL  A    +                 +V +T A  ++ G +KVVG+L +Y+ RL DEY KSLQ INPHTQEY+ RL+DE  + ELAG +Q YY+R       A +ALL+ EH+YY+H+SIA AV  AQAF   WG  +D+H A   A+A     GV  +   HP ++LG P+    D  D  + L+ LC  VY HGDDRCRTRA+LCH+ HHALH RF+ ARDLLLMSHLQ+    AD+ TQILYNR MV+LGLCAFR GLV+DAH CL ++CSSRVKELLAQG+Q  R+        DK+ EQEKAERRRQTPYHMH+NLDLLECCHLTSAMLLEVP M  E            R RV S+HFR+++DIF+RQVFTGPPEN RDH++ AAK L  GDW+ C+ L++
Sbjct:  312 RDLKQALEVLAKAAQEKFGFHRELQCCMHLIASHFDSNRTIDDYMDVPTWRACHGQLTKACSILEAHPQATLGTVDDDELADLALAAMLAKXXXXXXXXXXXXXXXPKEVIDTEAPPDEAGCVKVVGNLLTYVTRLEDEYVKSLQHINPHTQEYVARLRDERPLEELAGSIQAYYDRSGSTETAATVALLRIEHMYYKHDSIAEAVRDAQAFRAAWGSRDDVHAASRKATA-----GVSTVEKSHPGSWLGAPTTPSTDSCDTAKSLKELCGYVYDHGDDRCRTRALLCHVAHHALHGRFHAARDLLLMSHLQEVAHDADIETQILYNRAMVLLGLCAFRSGLVHDAHSCLAEICSSRVKELLAQGVQSARWS-------DKSDEQEKAERRRQTPYHMHVNLDLLECCHLTSAMLLEVPAMVVEEARNKQLRGAPPRTRVTSRHFRKHMDIFSRQVFTGPPENTRDHILCAAKALALGDWRECARLVV 788          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A7S2UU87_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU87_9STRA)

HSP 1 Score: 471 bits (1212), Expect = 3.300e-153
Identity = 251/480 (52.29%), Postives = 325/480 (67.71%), Query Frame = 1
Query:   10 QDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTL-RNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGV---------EVGENDVAETLAEVEKT--GILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHA-DYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG 1410
            +D+LRQL  LAY AR+ GP  E+P++ +LVSA FDT  R ID++M T+ W      + RV  +L+   +L L    +  +ADL+ AG G          E GE    E  AE        ++VVG+LS+YM R+ +EY KSLQ INPHTQEYI RLKDE+++V LA KVQ YY R       A + L+  EH YY+H+SIA AV +AQ+FT  WG    LHP C    A     G LD  T HPA+ LG P+ D     D  +++  + + +Y+HGDDR RTRAMLCHITHHA+HDRF+ ARDLL MSHLQD I   DV+TQIL+NR MV+LGLCAFR G++ + H C+ +VCS R KELLAQG+Q +R+        ++ PE+EKAE+RRQ PYHMHINLDLLECCHLT+AMLLEVPN+A +    R++VIS+HFR+  DI++RQVFTGPPEN RDHV+A+A+ L EG W++ + L+LG
Sbjct:  356 RDLLRQLQALAYAARKFGPRVELPVLFHLVSAQFDTTSRQIDDYMQTTSWKHVYACLMRVVSVLEGHQDLKLAVVADTDLADLVLAGKGELKVQDKPIDEEGEGQEVEGDAEAATNDPNEIQVVGTLSAYMRRINEEYVKSLQHINPHTQEYIARLKDEALIVALAAKVQAYYVRVGMPTEAASMCLMGLEHTYYKHDSIALAVQRAQSFTALWGDRALLHPGCV---ACTKMEGKLDAETCHPASALGTPTCDFSSLPDMAQEVSDMALFIYRHGDDRLRTRAMLCHITHHAMHDRFHQARDLLFMSHLQDTIGHTDVSTQILFNRAMVLLGLCAFRAGMILEGHYCMTEVCSGRTKELLAQGVQQSRY-------HERNPEKEKAEKRRQMPYHMHINLDLLECCHLTAAMLLEVPNIALDPG--RKKVISRHFRKCRDIYSRQVFTGPPENTRDHVMASAQALEEGQWRQAAKLLLG 823          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A7S4IUV2_9STRA (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUV2_9STRA)

HSP 1 Score: 447 bits (1149), Expect = 1.050e-142
Identity = 261/522 (50.00%), Postives = 329/522 (63.03%), Query Frame = 1
Query:    7 SQDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLL-DSRPELTLGQ-AGNEVVADLL--QAGTG---------------------------VEVGENDVAETLAE---VEKTGILK--------VVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDH---ADYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQA-DVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTE--------LRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG 1410
            ++ +LRQL  L+ +A R GP  E+P++M++V+A FD LR +D+FMD   W SC GY+ R+   L D   + TLG  + +E   DLL  QA  G                            E GE++  +  AE   +EK G +         V+GSLS ++ RL +EY KSLQ I+PHT EY+ RL+DE+ +VEL GK Q YY R       A+LA L+ EHLYY+H++IA  V +A  F   +G+AE LHPAC   SA A      D S  HPAA LG+PSV  +     D  + +  LC  VY++G DR +TR+MLCHI HHALHDRF  ARDLLLMSHLQD IS A DV+T +L+NRMMV +GL AFR G + DAH CL DVCS RV+ELLAQG+   RF        DKT EQEKAERRRQTPYHMHIN+DLLE CHLTSAMLLEVPNMAQ             R RVIS+ FR++ DI++R VFTGPPE  RD+V+ A++ LM GDWK+CS+L+ G
Sbjct:  431 NRSILRQLEGLSRLAVRFGPRFEVPVLMHVVTAQFDLLRTMDDFMDAKTWKSCAGYLWRIASALEDGEEKYTLGHLSADEAADDLLATQAAVGGKMXXXXXXXXXEGAMAAVAADEKLINPETGESETEDERAERIRLEKEGKMTPEELRTIIVIGSLSLHLTRLDEEYIKSLQRISPHTSEYVTRLRDEARLVELLGKAQAYYTRIGSKPEAAELAQLRVEHLYYRHDTIADQVDRAALFHETYGEAELLHPACI--SADADEGKSNDYSKSHPAAALGRPSVATESEAPVDSAQLITDLCTYVYKYGSDRSKTRSMLCHIFHHALHDRFLEARDLLLMSHLQDTISNAGDVSTMLLFNRMMVTMGLAAFRLGRIWDAHQCLGDVCSGRVRELLAQGVSSGRFS-------DKTDEQEKAERRRQTPYHMHINMDLLEACHLTSAMLLEVPNMAQAGAAGGDDTGGPRRARVISRQFRKHHDIYDRSVFTGPPEQTRDYVMVASRALMRGDWKKCSELLGG 943          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: F0Y6I4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6I4_AURAN)

HSP 1 Score: 440 bits (1131), Expect = 1.150e-142
Identity = 243/470 (51.70%), Postives = 302/470 (64.26%), Query Frame = 1
Query:    7 SQDVLRQLSVLAYVARR-LGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVGENDVAETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHADYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTEL--RRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLIL 1407
            ++++L  L  LA  A+R  G  RE+  +M+L++A FD  R ID++MD + W SC G + RV  +L + P         E                ND  + +         KVVG+L +++ RL DEY KSLQ INPHT EY+ RL+DE+ + +LA  VQ YY R  +    A +ALL+ EH+YY+HESIA AV  AQA+      +   HP   + +ATA +    D   G                D +  +R LC  VY HGDDRCRTRA+LCH+ HHALH RFY ARDLLLMSHLQD    +DV TQILYNR MV+LGLCAFR GL++DAH CL ++CSSRVKELLAQG+Q  RF        DK PEQEKAERRRQTPYHMHINLDLLECCHLT+AMLLEVPNM+ E+      +R IS+HFR+++DIFNRQVFTGPPEN RDHV+ AAK L  GDWK C+DL+L
Sbjct:  266 ARELLAALEALAGKAKRSFGYARELGALMHLIAAQFDANRTIDDYMDVATWRSCHGQLGRVVAVLSAHP------GKGEDXXXXXXXXXXXXXAPNDDPDAV---------KVVGNLLTFLARLEDEYVKSLQRINPHTHEYVSRLRDEAPLTDLAAGVQAYYVRVGDDKAAATVALLRVEHMYYKHESIASAVRDAQAYRANERDSSKSHPGAWLGAATAAATAPDDEVVG----------------DASASVRKLCEYVYAHGDDRCRTRALLCHVAHHALHGRFYVARDLLLMSHLQDTAYMSDVETQILYNRSMVMLGLCAFRNGLIHDAHACLAEICSSRVKELLAQGMQSARFS-------DKNPEQEKAERRRQTPYHMHINLDLLECCHLTAAMLLEVPNMSVEAGGAGGHKRPISRHFRKHLDIFNRQVFTGPPENTRDHVLCAAKALGVGDWKTCADLVL 697          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: A0A6U3ZAQ9_9STRA (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZAQ9_9STRA)

HSP 1 Score: 441 bits (1134), Expect = 2.160e-141
Identity = 256/517 (49.52%), Postives = 325/517 (62.86%), Query Frame = 1
Query:   16 VLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPE-------LTLGQAGNEVVADLLQAGTGV------------------------EVGENDVAETLAE-----------VEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSV-DHDHADYTEQLRV---LCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQA-DVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQES-----TELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILG 1410
            VLRQL  L+ +A R GP  E+P ++++++A FD +R +D++M+T  W SC  Y+ RV ++LD   E       L    AG  +   +L  G G                           GE + A+  AE            E+   ++V GSL+ ++ RL +EY KSLQ I+PHT EY+ RL+DE+ +V+L  K Q YYER       A+LA L+ EHLYY+H+SIA  V +A  F  ++G+A  LHPAC   + T    G +D S  HPAA  G+PSV D D A+  +  ++   LC  VYQHG DR RTRAMLCHI HHALHDRF  ARDLLLMSHLQD IS A DV+T IL+NRMMV LGL AFR G + DAH CL DVCS RV+ELLAQG+   RF        DK+ EQEKAE+RRQ PYH HINLDLLE CHLTSAMLLEVPNMA  +     +  R RVIS+ FR+  DI++RQVFTGPPE  RD+V+ AAK LM+GDWK+CS+L++G
Sbjct:  358 VLRQLEGLSRLAARFGPRSEVPALIFVITAQFDLVRTLDDYMETKTWRSCAEYLGRVANILDGGEEKYKLDLPLPDEDAGGLMGGVVLPEGAGKMKAAAKAGGGAMAAVAADEKLINPHTGETETADERAERIRIETEEKMSPEELHTIRVPGSLALFLTRLDEEYNKSLQKISPHTIEYVARLRDEARLVDLQMKFQAYYERIGSTAEAAELAQLRVEHLYYRHDSIATQVDRASKFYERFGEASMLHPACVSDNDT---RGSVDYSKVHPAASCGKPSVEDTDAAESVDSAKLIADLCTYVYQHGSDRSRTRAMLCHIYHHALHDRFLDARDLLLMSHLQDTISSAGDVSTMILFNRMMVTLGLAAFRLGRIWDAHQCLSDVCSGRVRELLAQGVSTGRFS-------DKSAEQEKAEKRRQIPYHQHINLDLLEACHLTSAMLLEVPNMAASAEGDAGSSRRTRVISRTFRKNHDIYDRQVFTGPPEQTRDYVMRAAKALMKGDWKKCSNLLVG 864          
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Match: K3WGH6_GLOUD (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGH6_GLOUD)

HSP 1 Score: 434 bits (1115), Expect = 1.980e-139
Identity = 237/479 (49.48%), Postives = 319/479 (66.60%), Query Frame = 1
Query:    1 QKSQDVLRQLSVLAYV---ARRLGPVREIPIIMYLVSA-MFDTLRNIDEFMDTSMWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAG---TGVEVGENDVA--ETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDESVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQAFTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHADYTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCS-SRVKELLAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLIL 1407
            +K  ++  QLS+L  +   ARRLGP R++   MYL+   MFD+   ID  M    W S    +  +  +L+  P  +L    +E  AD+LQAG     ++  E+D A  +TL +  + G +KV G L++++ RL DEYTK+LQ  +PHT EYI RL DES+++E A +VQ YYE + +    + +AL++AE +YY+HESIA A+H++ A    +G    LHPAC  ++A        D+S+ HPA+ LGQP+VD    D  ++LR +C+ V++H D R +TRAMLC I HHALHDRF+ ARDLLLMSH+QDNI+ AD+ATQIL+NRMM  LGL AFR GL+ +AH CL ++C+ SR KELLAQG+Q  RFQ R         EQE+ ERRRQ PYHMHINLDLLE CHL SAMLLEVPNM       R+R++SK FR+ ++   R VF GPPEN RDHV+AAAK L +G WK+ ++L+L
Sbjct:  312 KKGTELSEQLSILRKLSNYARRLGPARQLVATMYLLGTQMFDSSSKIDRVMSARQWKSAHSDLTTILKILEKNPGFSLAPLTSEDQADILQAGRDAAALDKEEDDSAYMDTLPKAGEKGKIKVSGDLAAFIERLSDEYTKALQQTDPHTSEYIGRLFDESLLIEAAHRVQNYYEHKNDTNRASTVALIRAELIYYKHESIANALHESHAKRAVYGDPVHLHPACNGSAAKKVPIASFDVSSVHPASILGQPTVDVPALDTEKELREVCMFVFKHADIRAKTRAMLCRIYHHALHDRFHEARDLLLMSHIQDNITDADIATQILFNRMMAQLGLAAFRSGLIWEAHACLSEICTGSRTKELLAQGMQSFRFQER-------DLEQERLERRRQVPYHMHINLDLLETCHLVSAMLLEVPNMVNSRVSERKRMVSKAFRKLLEFHERLVFEGPPENPRDHVVAAAKLLAQGSWKKSTELLL 783          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8750.16896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM18_ECTSI2.840e-28986.94Eukaryotic translation initiation factor 3 subunit... [more]
A0A835YUE3_9STRA9.190e-19062.47Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2BS49_9STRA1.500e-16655.06Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2HV13_9STRA2.590e-16053.96Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4E4E4_9STRA4.500e-15551.12Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UU87_9STRA3.300e-15352.29Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4IUV2_9STRA1.050e-14250.00Eukaryotic translation initiation factor 3 subunit... [more]
F0Y6I4_AURAN1.150e-14251.70PCI domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A6U3ZAQ9_9STRA2.160e-14149.52Eukaryotic translation initiation factor 3 subunit... [more]
K3WGH6_GLOUD1.980e-13949.48Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8750contigS-dermatodea_contig8750:501..5342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score826.2
Seed ortholog evalue7.5e-237
Seed eggNOG ortholog2880.D8LM18
Preferred nameEIF3C
KEGG koko:K03252,ko:K08597
KEGG Pathwayko03013,map03013
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031369,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGsKOG1076@1,KOG1076@2759
EC3.4.22.68
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03012,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3 subunit c)
Ec32 orthologEc-14_002510.1
Exons6
Model size1413
Cds size1413
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8750.16896.1prot_S-dermatodea_contig8750.16896.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8750 501..5342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.2353046-CDS-S-dermatodea_contig8750:500..6831622925364.2353046-CDS-S-dermatodea_contig8750:500..683Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 501..683 +
1694079883.320741-CDS-S-dermatodea_contig8750:500..6831694079883.320741-CDS-S-dermatodea_contig8750:500..683Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 501..683 +
1622925364.2482488-CDS-S-dermatodea_contig8750:924..12811622925364.2482488-CDS-S-dermatodea_contig8750:924..1281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 925..1281 +
1694079883.3370478-CDS-S-dermatodea_contig8750:924..12811694079883.3370478-CDS-S-dermatodea_contig8750:924..1281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 925..1281 +
1622925364.258746-CDS-S-dermatodea_contig8750:2538..27421622925364.258746-CDS-S-dermatodea_contig8750:2538..2742Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 2539..2742 +
1694079883.3519046-CDS-S-dermatodea_contig8750:2538..27421694079883.3519046-CDS-S-dermatodea_contig8750:2538..2742Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 2539..2742 +
1622925364.2696042-CDS-S-dermatodea_contig8750:3359..37191622925364.2696042-CDS-S-dermatodea_contig8750:3359..3719Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 3360..3719 +
1694079883.3629591-CDS-S-dermatodea_contig8750:3359..37191694079883.3629591-CDS-S-dermatodea_contig8750:3359..3719Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 3360..3719 +
1622925364.285843-CDS-S-dermatodea_contig8750:4381..45851622925364.285843-CDS-S-dermatodea_contig8750:4381..4585Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 4382..4585 +
1694079883.3730807-CDS-S-dermatodea_contig8750:4381..45851694079883.3730807-CDS-S-dermatodea_contig8750:4381..4585Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 4382..4585 +
1622925364.30001-CDS-S-dermatodea_contig8750:5237..53421622925364.30001-CDS-S-dermatodea_contig8750:5237..5342Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 5238..5342 +
1694079883.3838022-CDS-S-dermatodea_contig8750:5237..53421694079883.3838022-CDS-S-dermatodea_contig8750:5237..5342Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8750 5238..5342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8750.16896.1

>prot_S-dermatodea_contig8750.16896.1 ID=prot_S-dermatodea_contig8750.16896.1|Name=mRNA_S-dermatodea_contig8750.16896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=471bp
QKSQDVLRQLSVLAYVARRLGPVREIPIIMYLVSAMFDTLRNIDEFMDTS
MWHSCRGYINRVTDLLDSRPELTLGQAGNEVVADLLQAGTGVEVGENDVA
ETLAEVEKTGILKVVGSLSSYMMRLGDEYTKSLQSINPHTQEYIRRLKDE
SVVVELAGKVQGYYERQAEMGITADLALLQAEHLYYQHESIARAVHKAQA
FTNQWGKAEDLHPACTVASATAPSNGVLDISTGHPAAFLGQPSVDHDHAD
YTEQLRVLCVTVYQHGDDRCRTRAMLCHITHHALHDRFYPARDLLLMSHL
QDNISQADVATQILYNRMMVILGLCAFRKGLVNDAHDCLRDVCSSRVKEL
LAQGIQMNRFQARARLLFDKTPEQEKAERRRQTPYHMHINLDLLECCHLT
SAMLLEVPNMAQESTELRRRVISKHFRRYVDIFNRQVFTGPPENIRDHVI
AAAKRLMEGDWKRCSDLILG*
back to top

mRNA from alignment at S-dermatodea_contig8750:501..5342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8750.16896.1 ID=mRNA_S-dermatodea_contig8750.16896.1|Name=mRNA_S-dermatodea_contig8750.16896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4842bp|location=Sequence derived from alignment at S-dermatodea_contig8750:501..5342+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAAATCGCAGGACGTGCTCCGCCAGCTGAGCGTCCTGGCCTACGTCGC CCGCCGCCTGGGCCCCGTCCGAGAGATCCCCATCATCATGTACCTCGTAT CCGCCATGTTCGACACGCTTCGCAACATCGACGAGTTCATGGACACGTCG ATGTGGCACAGCTGCAGGGGTTACATCAACAGGGTGAGTTTAGAGGGGGG AAGCGCGTACGTGCGCGGTGCCACCGTGTGTATGGGCCGCAGCAGAGTCG ATTGCGTTCGGCAACATACATGTATGACTCGACCGCTACCCCACCCGCGA AATAGTTGAAAATACATTAAAGTGAAGACATGAGATGTGTATCCCTTTTC ACGACCCGCCCCCCGCCCCCTCGTCCCTCCCCCCACGCATCATGCCGGTC ACACCATCGCACGTCACACACCAGGTGACCGACCTCCTGGACTCCCGCCC CGAACTCACCCTGGGCCAAGCGGGCAACGAGGTCGTGGCCGACCTGCTCC AGGCCGGCACCGGGGTGGAGGTCGGCGAGAACGACGTGGCCGAGACCCTC GCGGAGGTGGAGAAGACGGGCATCCTGAAGGTCGTGGGGTCGCTCTCGTC GTATATGATGCGCCTCGGGGACGAGTACACGAAGTCCCTGCAGAGCATCA ACCCGCACACGCAGGAGTACATCCGCCGCCTGAAGGACGAGTCCGTCGTG GTGGAGCTTGCCGGGAAGGTGCAGGGGTACTACGAGCGGCAGGCGGAGAT GGGCATCACGGCGGATCTCGCGCTTCTGCAGGTGGGGTGTGTGGGCGTGC ACTCGTGCTAAACGCGTATGCCGTATCCAGACGGACGTAGACCACGCATC GCAACAATGCTATAGTGTGTGTGTGGGGGGGGGGGGGTCGTTATCTCTTG GCCGGGTTTGCTGATTGGGTTGTGTCGGATTGGTCTTGCTTTGCTTTGAA TTTTGCTTTGAATTGCGTTTTTCTCGGGTTTTTTATACTTGTTTGCTTTA TTTTGTCATTATATTTTTGCTTTGTTGCTTCGTGTTGCGAGGATGACCTT GATTTTCTTGTGCGGTGTGTCGTCGCCACGTGGTGTGAATGCGTGCTGTT CGTTTTTGTTTGTTTGGGGGGGGGGCGATCGCTTGAGTTGCCAGTTTCTT TCTCGCCTTTTTGTTGCCTTCCGACGAGGCTTGTGCGGGCAGGCTGTCGG CGTCTCATGAAGCCGAGAAACGGCGTCGAACAAAAAATAGCCCTTGCACG TCTAAACCCGTGTGAAGCTCCTCGTCGGGGACGAAGACACTCGAGAAAGT TTCTCACAAGCCCTCTGACCTCGGACCCGACCATTGCCGACCCCACATCT CGTCCCAACACCCATTCCACGCAGAAAAGCCCGCCGCGGCACACACGTAG CTCGCCCGACATCCTCCCACCCACGGTTTCACCGTCGCCGTCGGCGTAGC GCCAACAAATTTTTTGAAACCCTAACTTTGTATTTTGTGTAGGGAAAACA TTTTTGCGCCATCTTTGGCAGAGTATGGTCCATGCAACACAAGTTGTCCA CTTTTTGTCCAGGCCATAACGTTTGATCTAAAACGAGGTAGACCTTTAAA CTGCCACTTATATTCTTGTACGGGAGGCCAAGAGCTGTCGAAATCTGATG TCCAAATGTTGCCCCGAAAACTGTGCCCCTAAAATATAACAGTTCCAGAT TTCAACCAAAAGTGGTTTCAACTACTGTATTGAACTAAAAACGAAGACCA AAATGTGCCACCATGAGAACGTCCGCCTTTTTAAAAGCATTTTAAATACA CTTTTTGGGTTTTAAGGGACCCCCCCCCCCATCTTGAGAAACAATTAGAT TTGTGACATGGAAATTTGTGAACAATTTGAGCGATATGGCCTATAGGAAA AAGCGATTGGCCATATAGGCGATCGATCGACCCTGTGGGAACAATGCTCC ATCCTCTCGAGGACGCGTGGTCAATGGTCTAAACAGCTAAGGCATGTAAT ACATGAGTACGGCCCCCTCCCCCACGCCGCCGCCGCAGGCCGAGCACCTG TACTACCAGCACGAGTCCATCGCCCGCGCCGTGCACAAGGCCCAGGCTTT CACGAACCAGTGGGGTAAGGCAGAAGACCTCCACCCCGCGTGCACCGTGG CGTCCGCTACGGCTCCCTCGAATGGCGTCCTGGACATTTCCACGGGGCAC CCTGCTGCCTTCTTGGGGCAGCCCTCGGTGGACCACGATCACGTGAGTTT GTTAGTGTTGTGTAGGTGTTGTGTAGGTGGTGCGTGTGTGCGTTGTGGAA GGGGTGTTGGCTGGTTGATGGCGGTGCCGTACCTTTTTTTTAGTTTCGTG TCTTGGGTGTTGCAACCTTGTCGTAGGCGTTCTGCAACTGTATTTACACT AGTCGCGTGTCCCCGAGACACTCAATTTGTGTTCCAGTAGTTGTAGGTGA AATATGATATTCAGCTATTTGTTGTTGTTGCTGCTGTTGAGAAGGCGTCG AGAAACCCACGACAACGAGAGTTACCACCCGGCTAACTGATTTTTTCATA CCAGCTGCGCGAGCCCGGAACATGTCACGTGTGTGCACTCAAGTCATCTG AGCGAAAAGTCAACGTTCCCACAAGAGCGAGCGGTCGCATTCCTTCGGCG GTGGCGTGCAAGAGTCGGGCGTATTCAACAGCTTGCCGACGGCAATACTC CGTTGCCGTCGCGAAAAAGCGAGGGCCCCCCTTGGAACCTTCACTCGTTT TTTTATCTTCGCAATCGCGTCAAATCGCTCGGCAAGTCCCAATTCACAAC TCACACCCTCTCCCTTCCCTCCCCATGCTATGCTCTTCTCACCGCCCCCC CCCTCCCAGGCCGACTACACGGAGCAGCTGCGCGTCCTGTGCGTGACGGT TTACCAACACGGCGACGACCGCTGCCGCACCCGCGCCATGCTCTGCCACA TCACCCACCACGCTCTTCACGACCGCTTCTACCCGGCCCGCGACTTGCTC CTCATGAGCCACCTGCAGGACAACATCAGCCAGGCGGACGTCGCGACGCA GATCCTGTACAACCGGATGATGGTGATCCTCGGCCTTTGCGCGTTCCGCA AGGGGCTGGTTAACGACGCCCACGACTGCCTCAGGGACGTGTGCTCGTCG CGCGTCAAGGAGCTGCTGGCGCAAGGCATCCAGATGAACCGTTTCCAGGC ACGCGCGCGTTTGCTTTTTGTGTTTGTCCGTTGTCTCGCGTTTCTTCTTG TTCTTCTTCTTTTGTTGCGAATGGAACCGTTGTGTTGGTTGATAGTTTGG CGCGAACGGGGGTTGGTAGCCACCGAAAGGAACGAGGCCGTCTTGACGTA GCGTGCTGGTAGGTCTTGCCCTGCGGTCGTCAGGTAGGAGAGGTGCCCTC CTTGCCAACGAGGCCGTCCACGGCGTTGAAACCCGGCGGTTTTGTTTTGC CAGTTTACGAATTTGTTGCTCTTGCTCCCCTCGCGGTTTCAGTACAAGTA TATATTCCTGGAAAGGGGCGGAAAAAGCGCGCGCGAGTGCTGCTCTGCTG GTCACGACGAATTCGCGATCTCGTCGTTGTATGATATGCATATATAGAGC GATGCAAGCTTCTCTGCGGGCCGGCGTCGATGCGTGCGATTAGCGATCGC CGTACACGGGCCTCGCGTGCTTTGCTCCGAGCATCCCCACTCTCTCCTCG ACACGGTTATATACCGGTACCATGTGTCGCGCTCCCTTTTTCGCCGTTTG GCGTCGCAGCGGTCTCGTCGATCAACCTTCCTCCCCAAAATGTCCAACCT CCCGCTTCCCCCCCCGCCTCGCTCCCGCCTCTCGCCGAAAACCTGTTGCC GTTTGTATTTCCTTTTCGCTGTGACGTTTAGGACAAGACCCCCGAGCAGG AGAAGGCTGAGCGCCGAAGGCAAACGCCGTACCACATGCACATCAACCTC GACCTGCTGGAGTGCTGCCACCTGACGAGCGCGATGCTCCTCGAGGTGCC CAACATGGCGCAGGAATCAACGGAGCTGCGCAGGCGCGTCATCTCCAAGC ACTTCCGTCGCTACGTGGACATCTTCAACCGCCAGGTACTGCTAACGTGT TTTTCGGATAGAGGCGGACTTAGTCCACTACTGGTAGTATAGTGGAGGCT ATGACTTCCACTCCTCAGGCATATATGTAAATGGATTGAATGGCTAGGTA AGAACCTCTTGCGCGGCCGCTGACCACACCTTTCAGAGCGTTTTTGTTTT TATGCAGCGCGTGTCATGGTCATCGTCCCCCCCCCCCCCCCCCCCCTCCC GGCGCAAGGATGATGGCTAGCAGCTGGTATCATCACTTTGAAACGCAGCC TGGCCGGCGAAAACCCGGCATACGGCTTAGTCCTGGCATTTTTGGGACGC ATGGTCTGTGTTCGTTTGGACACGACATGCGTTCAACATAAGTCCCCCCC CCCCGCTTAAAACTAGGCAATTTTCATGGAAGAAAGCACATTGGTGCTGG CGTGATGTGACTCTCCCGACTATTTTCTGGAAACACGCTCGAGCGGGCCG CACCCCGGCTCCAAATCCCTGTTGCTTGCGTGTAGCCCCCCCTCGCCCTC CCGGCGTGATAATATCCCGACTGCTTTGTCGAAACGCGGCCGAGGTTGTG TAGGCATAATTTGCTGTAGCGCTGCCCCCTGGCGTTATCCCGTGCACTGC TTAACCGGTGTCTGCGCCACGACGATGAATCGTGAAGGTGTTCACCGGAC CGCCCGAGAACATCCGCGACCACGTCATCGCCGCCGCTAAGAGGTTGATG GAGGGAGACTGGAAGCGCTGCTCCGACCTTATCCTCGGGTAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8750:501..5342+

>mRNA_S-dermatodea_contig8750.16896.1 ID=mRNA_S-dermatodea_contig8750.16896.1|Name=mRNA_S-dermatodea_contig8750.16896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2826bp|location=Sequence derived from alignment at S-dermatodea_contig8750:501..5342+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAAATCGCAGGACGTGCTCCGCCAGCTGAGCGTCCTGGCCTACGTCGC
CCGCCGCCTGGGCCCCGTCCGAGAGATCCCCATCATCATGTACCTCGTAT
CCGCCATGTTCGACACGCTTCGCAACATCGACGAGTTCATGGACACGTCG
ATGTGGCACAGCTGCAGGGGTTACATCAACAGGCAAAAATCGCAGGACGT
GCTCCGCCAGCTGAGCGTCCTGGCCTACGTCGCCCGCCGCCTGGGCCCCG
TCCGAGAGATCCCCATCATCATGTACCTCGTATCCGCCATGTTCGACACG
CTTCGCAACATCGACGAGTTCATGGACACGTCGATGTGGCACAGCTGCAG
GGGTTACATCAACAGGGTGACCGACCTCCTGGACTCCCGCCCCGAACTCA
CCCTGGGCCAAGCGGGCAACGAGGTCGTGGCCGACCTGCTCCAGGCCGGC
ACCGGGGTGGAGGTCGGCGAGAACGACGTGGCCGAGACCCTCGCGGAGGT
GGAGAAGACGGGCATCCTGAAGGTCGTGGGGTCGCTCTCGTCGTATATGA
TGCGCCTCGGGGACGAGTACACGAAGTCCCTGCAGAGCATCAACCCGCAC
ACGCAGGAGTACATCCGCCGCCTGAAGGACGAGTCCGTCGTGGTGGAGCT
TGCCGGGAAGGTGCAGGGGTACTACGAGCGGCAGGCGGAGATGGGCATCA
CGGCGGATCTCGCGCTTCTGCAGGTGACCGACCTCCTGGACTCCCGCCCC
GAACTCACCCTGGGCCAAGCGGGCAACGAGGTCGTGGCCGACCTGCTCCA
GGCCGGCACCGGGGTGGAGGTCGGCGAGAACGACGTGGCCGAGACCCTCG
CGGAGGTGGAGAAGACGGGCATCCTGAAGGTCGTGGGGTCGCTCTCGTCG
TATATGATGCGCCTCGGGGACGAGTACACGAAGTCCCTGCAGAGCATCAA
CCCGCACACGCAGGAGTACATCCGCCGCCTGAAGGACGAGTCCGTCGTGG
TGGAGCTTGCCGGGAAGGTGCAGGGGTACTACGAGCGGCAGGCGGAGATG
GGCATCACGGCGGATCTCGCGCTTCTGCAGGCCGAGCACCTGTACTACCA
GCACGAGTCCATCGCCCGCGCCGTGCACAAGGCCCAGGCTTTCACGAACC
AGTGGGGTAAGGCAGAAGACCTCCACCCCGCGTGCACCGTGGCGTCCGCT
ACGGCTCCCTCGAATGGCGTCCTGGACATTTCCACGGGGCACCCTGCTGC
CTTCTTGGGGCAGCCCTCGGTGGACCACGATCACGCCGAGCACCTGTACT
ACCAGCACGAGTCCATCGCCCGCGCCGTGCACAAGGCCCAGGCTTTCACG
AACCAGTGGGGTAAGGCAGAAGACCTCCACCCCGCGTGCACCGTGGCGTC
CGCTACGGCTCCCTCGAATGGCGTCCTGGACATTTCCACGGGGCACCCTG
CTGCCTTCTTGGGGCAGCCCTCGGTGGACCACGATCACGCCGACTACACG
GAGCAGCTGCGCGTCCTGTGCGTGACGGTTTACCAACACGGCGACGACCG
CTGCCGCACCCGCGCCATGCTCTGCCACATCACCCACCACGCTCTTCACG
ACCGCTTCTACCCGGCCCGCGACTTGCTCCTCATGAGCCACCTGCAGGAC
AACATCAGCCAGGCGGACGTCGCGACGCAGATCCTGTACAACCGGATGAT
GGTGATCCTCGGCCTTTGCGCGTTCCGCAAGGGGCTGGTTAACGACGCCC
ACGACTGCCTCAGGGACGTGTGCTCGTCGCGCGTCAAGGAGCTGCTGGCG
CAAGGCATCCAGATGAACCGTTTCCAGGCACGCGCGCGTTTGCTTTTTGC
CGACTACACGGAGCAGCTGCGCGTCCTGTGCGTGACGGTTTACCAACACG
GCGACGACCGCTGCCGCACCCGCGCCATGCTCTGCCACATCACCCACCAC
GCTCTTCACGACCGCTTCTACCCGGCCCGCGACTTGCTCCTCATGAGCCA
CCTGCAGGACAACATCAGCCAGGCGGACGTCGCGACGCAGATCCTGTACA
ACCGGATGATGGTGATCCTCGGCCTTTGCGCGTTCCGCAAGGGGCTGGTT
AACGACGCCCACGACTGCCTCAGGGACGTGTGCTCGTCGCGCGTCAAGGA
GCTGCTGGCGCAAGGCATCCAGATGAACCGTTTCCAGGCACGCGCGCGTT
TGCTTTTTGACAAGACCCCCGAGCAGGAGAAGGCTGAGCGCCGAAGGCAA
ACGCCGTACCACATGCACATCAACCTCGACCTGCTGGAGTGCTGCCACCT
GACGAGCGCGATGCTCCTCGAGGTGCCCAACATGGCGCAGGAATCAACGG
AGCTGCGCAGGCGCGTCATCTCCAAGCACTTCCGTCGCTACGTGGACATC
TTCAACCGCCAGGACAAGACCCCCGAGCAGGAGAAGGCTGAGCGCCGAAG
GCAAACGCCGTACCACATGCACATCAACCTCGACCTGCTGGAGTGCTGCC
ACCTGACGAGCGCGATGCTCCTCGAGGTGCCCAACATGGCGCAGGAATCA
ACGGAGCTGCGCAGGCGCGTCATCTCCAAGCACTTCCGTCGCTACGTGGA
CATCTTCAACCGCCAGGTGTTCACCGGACCGCCCGAGAACATCCGCGACC
ACGTCATCGCCGCCGCTAAGAGGTTGATGGAGGGAGACTGGAAGCGCTGC
TCCGACCTTATCCTCGGGTAAGTGTTCACCGGACCGCCCGAGAACATCCG
CGACCACGTCATCGCCGCCGCTAAGAGGTTGATGGAGGGAGACTGGAAGC
GCTGCTCCGACCTTATCCTCGGGTAA
back to top