mRNA_S-dermatodea_contig872.16866.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig872.16866.1
Unique NamemRNA_S-dermatodea_contig872.16866.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: D8LG95_ECTSI (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 2.150e-166
Identity = 242/312 (77.56%), Postives = 266/312 (85.26%), Query Frame = 1
Query:   10 PPYPYPCSQSSKEPLHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLWNKLPGALMVKGINVGDGEVELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQGVQIAIVREDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYRYAGYDTTYQYYGMS--DDGFFSGMAPCEVGTDCTDCGVK 939
            P Y  P  QSSK+PL I+GTGFKGEPVLNFDPPIW+P NYT+TVVSETELKL+LA+GSLW+K  G LMVKGINVGDGE+EL  GKGVKVATILEDP +T  +MHIYTTHTKHFPV G GF SV DP +PP IVIDGIS++NYKIQDNW + VM L LL+G +WA V EG  TPIKI+SIDTGAG V  P GVQIA VREDS+T LCEDSCSFA DGQCDEPGVAFGTSSSY G    SYYSD+L+YNPYGLGWGYDDDANSFL TNDYS MYRYAGYDTTYQYYGM+  DDGFF+GM+PC+VGTDCTDCGVK
Sbjct:  438 PSYGQPKYQSSKQPLQILGTGFKGEPVLNFDPPIWAPDNYTVTVVSETELKLDLADGSLWSKYGGTLMVKGINVGDGEIELGGGKGVKVATILEDPTITEGEMHIYTTHTKHFPVHGTGFQSVLDPSRPPTIVIDGISSSNYKIQDNWRDNVMTLSLLEG-AWATVPEGEVTPIKIMSIDTGAGTVSLPSGVQIANVREDSSTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVK 748          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A6H5JWG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG4_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 9.860e-57
Identity = 109/189 (57.67%), Postives = 124/189 (65.61%), Query Frame = 1
Query:   34 QSSKEPLHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLWNKLPGALMVKGINVGDGEV--------------------------------------ELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKIQD--NWHNGVMNLQL 480
            QSS+ PL I+G+GFKG+PVLNFDPPIW+P NYT+TVVSE ELKLELA+GSLW+K  G LMVKGINVGDGEV                                      EL  GKGVKVATILEDP +T  +MHIY THTKHFPV G G +SV DP +PP IVIDGIS++NYKIQD   W +G  N  L
Sbjct:  378 QSSQAPLQILGSGFKGDPVLNFDPPIWAPDNYTVTVVSEAELKLELADGSLWSKYGGTLMVKGINVGDGEVTRRTVSVAPFVRSPFYASSLQHAQHSVASICVFYIPFIELGGGKGVKVATILEDPTITEGEMHIYATHTKHFPVHGTGLLSVLDPSRPPTIVIDGISSSNYKIQDCGPWGDGNSNFTL 566          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A835YLV2_9STRA (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA)

HSP 1 Score: 201 bits (512), Expect = 5.860e-55
Identity = 119/303 (39.27%), Postives = 161/303 (53.14%), Query Frame = 1
Query:   31 SQSSKEPLHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLWNKLPGALMVKGINVGDGEVELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQG-VQIAIVREDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYRYAGYDTTYQYYGMSDDGFFSGMAPCEVGTDCTDCGV 936
            S +S+E ++I GTGF   P L FDPP+ +  NYT+    +T + L L  G  W +  G LM+  I  G G V L   KG+KVA IL DP V   ++ IY TH+KHF   G+GF+   +P   P++ + G+ A  +K+  NW    + L L +G SWA ++   T  +K+  IDTGAG+V  P G V +  V  DS   +CED+C +  DG CDEP    G                +L  N +G  WGY DD  +F +    S      GY  +   YG  D GF  G+APC+ GTDCTDCGV
Sbjct:  451 SDASRE-INIAGTGFNSHPTLVFDPPLKAGTNYTVVAAVDTMITLRLQPGKKWREAAGPLMLMSIGAGAGPVPLGGSKGIKVAFILADPTVKEENLRIYATHSKHFKFSGSGFLQQFNPYLKPIVELAGVPADVFKVDSNWTPTSIQLLLNEGKSWAKLSGAETASLKVSKIDTGAGLVTLPNGGVHVVTVHADSNEVICEDTCVYPADGTCDEPSAKTG---------------GVLGTN-HGK-WGYSDDDANFHSAGYSSSYAGQHGYLASS--YGSDDLGF--GIAPCDPGTDCTDCGV 731          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A836CM60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM60_9STRA)

HSP 1 Score: 191 bits (485), Expect = 5.320e-51
Identity = 118/313 (37.70%), Postives = 159/313 (50.80%), Query Frame = 1
Query:   52 LHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLWNKLPGALMVKGINV-GDGEVELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQG---VQIAIVREDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYR---YAGYDT----------TYQYYGMSDDGFFSGMAPCEVGTDCTDCGVK 939
            L I G+GFKGEP L F PP+   K+YT   VSET + L L  G  W    G L++    V G+    L  G GVKVATIL DP V    + IY +H+KHF V+G GF S  DP   P +V D + A  + +QD W +  + + L+DG  WA +++  T+ I+++S+DTGAG+V   +G   V +  V  D    +CED+C +A+DG+CDE           A G Y             G+ WG  DD  +F A N +S       YAG              +   G   D    G A CE GTDCTDCG++
Sbjct:  565 LDICGSGFKGEPTLVFSPPLTKDKDYTFGAVSETAVSLRLVVGRKWRTTGGILLLVSAAVEGEDAARLGGGDGVKVATILTDPWVKERTLRIYASHSKHFTVQGGGFASKFDPALAPAVVFDSVPARVFTVQD-WTDTTLQVSLVDGYEWARLSDNATSDIRVLSVDTGAGLVAVGEGGGGVHVVTVHADDEDTICEDTCIYANDGRCDE-----------ASGEYPDD----------GVDWGLSDDEANFRA-NSFSSSDPANVYAGISXXXXXXXXXXXAFSSRGYVSDDVAFGHAECEPGTDCTDCGIQ 854          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A7S3XT65_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT65_HETAK)

HSP 1 Score: 147 bits (370), Expect = 9.640e-36
Identity = 105/312 (33.65%), Postives = 153/312 (49.04%), Query Frame = 1
Query:   46 EPLHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLWNKLPGALMVKGINVGDGE-----VELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIV-IDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQGVQIAIVR---EDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYRYAGYDTTYQYYGMSDDGF-------FSGMAPCEVGTDCTDCG 933
            +PL I G GF     L F PP+ + ++YT+ V S  EL L L EG  W    G L++  ++    E     V +  G G++VA IL+DP V     HIY +HT    ++G+GF      G+ P+ + +    +++++I  N    V+ L+L  G  WA V    TT +KI +ID+GAG   F   ++IA V    +D     C+D+C +A DG+CDE G          G  Y S+Y+++     YG   G +DD        DY   Y      + Y YYG              +G+APC+ GTDCTDCG
Sbjct:  495 KPLTIKGAGFVNTMTLMFYPPLMAGEDYTMAVTSGAELTLTLVEGKKWRPDHGPLLLFSVDPDGPEGKEAPVVMGSGAGMQVANILKDPVVEEQTNHIYESHTTMLTIKGSGFSGGFSVGEFPIALQLTPTKSSDFEIVSNTDT-VITLKLKPGKKWAGVGHDKTTQLKIKAIDSGAGEEQFKPPIEIAEVHSDLDDDEKGQCDDTCVYALDGECDEDG---------RGTYYGSWYNEM-----YG---GLEDD--------DYYSSYXXXXXTSDYGYYGXXXXXXXXXXXXTLNGLAPCDPGTDCTDCG 780          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A7S3XT52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT52_HETAK)

HSP 1 Score: 147 bits (370), Expect = 1.000e-35
Identity = 105/312 (33.65%), Postives = 153/312 (49.04%), Query Frame = 1
Query:   46 EPLHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLWNKLPGALMVKGINVGDGE-----VELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIV-IDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQGVQIAIVR---EDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYRYAGYDTTYQYYGMSDDGF-------FSGMAPCEVGTDCTDCG 933
            +PL I G GF     L F PP+ + ++YT+ V S  EL L L EG  W    G L++  ++    E     V +  G G++VA IL+DP V     HIY +HT    ++G+GF      G+ P+ + +    +++++I  N    V+ L+L  G  WA V    TT +KI +ID+GAG   F   ++IA V    +D     C+D+C +A DG+CDE G          G  Y S+Y+++     YG   G +DD        DY   Y      + Y YYG              +G+APC+ GTDCTDCG
Sbjct:  495 KPLTIKGAGFVNTMTLMFYPPLMAGEDYTMAVTSGAELTLTLVEGKKWRPDHGPLLLFSVDPDGPEGKEAPVVMGSGAGMQVANILKDPVVEEQTNHIYESHTTMLTIKGSGFSGGFSVGEFPIALQLTPTKSSDFEIVSNTDT-VITLKLKPGKKWAGVGHDKTTQLKIKAIDSGAGEEQFKPPIEIAEVHSDLDDDEKGQCDDTCVYALDGECDEDG---------RGTYYGSWYNEM-----YG---GLEDD--------DYYSSYXXXXXTSDYGYYGXXXXXXXXXXXXTLNGLAPCDPGTDCTDCG 780          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: D7FRJ9_ECTSI (Trypsin domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 8.470e-30
Identity = 100/315 (31.75%), Postives = 152/315 (48.25%), Query Frame = 1
Query:   34 QSSKEPLHIMGTGFKGEPVLNFDPPIWSPKN--YTLTVVSETELKLELAEGSLWNKLPGALMVKGINVGD------GEVELADGKGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKIQDN-WHNGVMNLQLLD--GGSWAAV-TEGGTTPIKIVSIDTGAGVVLFPQG-VQIAIVREDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYRYAGYDTTYQYYGMSDDGFFSGMAPCEVGTDCTDCGVK 939
            QSSK  L + G GF  +   + +     PK   ++ + +SET+L + L     W    G L +     G+      GEV+     G+KVATIL+DP+V+ + +H Y +HTKH  + G GF+S  +    P +V+      +Y+I++  W +  + + L    G  WA V  +  T  +K+VS+DTG G V  P G + IA VR+D  T  CEDSC +A+DGQCDE     G  +    G+ +    +  S+     G      +  +L ++         G D        SDD        C +GTDCTDCG++
Sbjct:  406 QSSKNKLILEGEGFPTDKEAHLEFGFGGPKEGTFSCSTLSETQLAVTLVGDDKWAHQGGPLFLLKAKFGEAEQGDEGEVDYTS-PGLKVATILDDPSVSESHLHAYASHTKHITIHGIGFLSTFNFHVKPQLVLSPTLVGDYEIKEQGWTDETVTISLSTDPGAMWANVRADDKTVEVKVVSVDTGGGEVFMPGGGIVIAEVRKDDATFNCEDSCVYANDGQCDED--RDGVEAVNWSGAMTDSIGESESFTSQASG------SRGYLGSS------AMPGED--------SDDLVLVNSPSCPLGTDCTDCGLE 697          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A6U1PF74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PF74_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.440e-20
Identity = 78/234 (33.33%), Postives = 111/234 (47.44%), Query Frame = 1
Query:  271 KVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIV-IDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQGVQIAIVR------EDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYNPYGLGWGYDDDANSFLATNDYSEMYR------YAGYDTTYQYYGMSDDGFFSGMAPCEVGTDCTDCG 933
            ++A +L DP VT +   IY   T+     G GF          ++V +D   A++Y++       V+ L L +G  WA V  G T PIK+VSID+GAG   +   VQIA+ +      ED+    C+DSC +A DG+CD+P                   +D + +   G  WG DDD   +    D S++Y       YAG    Y YYG     +   +A C+ GTDCTDCG
Sbjct:    1 QIANVLRDPVVTESSKPIYAGLTQQLTFDGIGFEGGFGVSDFQIVVNLDPTPASDYEVLAKSEKLVL-LGLKEGKKWADVPAGETVPIKVVSIDSGAGEEQYNPPVQIAVAQADPSEDEDAHPGQCDDSCIYAFDGECDDPE------------------NDHVDH---GFEWGEDDD---YFYDYDDSDLYXXXXXFYYAG--GGYGYYGYDTLNY---IAACDPGTDCTDCG 204          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A835YHY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHY7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.810e-18
Identity = 74/235 (31.49%), Postives = 111/235 (47.23%), Query Frame = 1
Query:   52 LHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSETELKLELAEGSLW-NKLPGALMVKGINVGDGEVELADGKG-VKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKI----QDNWH-----NGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDT-------------GAGVVLFPQG-VQIAIVREDSTTALCEDSCSFADDGQCDEPGVA 681
            L I G+GF  +  L F+P + +  +Y + V+  +E++L    G+ W +   G L V  I  G   V L  G G +KVAT+L DP+V+AA   IY +HT+   V G+G VS  DP   P + ++ +  + Y +     D+W      N                    TT  +  S+D              GAG V+ P G V +A V+ D+    C+DSC+FA+D  C E G+A
Sbjct:  652 LFISGSGFTSDMKLEFEPALTAGDDYEMDVLGPSEVRLRRQPGTSWPSDATGTLRVTSITAGGRTVPLGGGAGGIKVATVLRDPSVSAAPTAIYASHTRVLRVAGSGLVSRLDPALKPRVRLN-VPKSAYVVGDWGSDHWKYVACGNXXXXXXXXXXXXXXXXXXSATTS-RCGSLDRRGTLTAHLKFAFWGAGEVVLPDGGVLVACVQPDNPNVRCDDSCTFANDNICHEEGLA 884          
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Match: A0A7S2B105_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B105_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.430e-12
Identity = 67/208 (32.21%), Postives = 97/208 (46.63%), Query Frame = 1
Query:   34 QSSKEPLHIMGTGFKGEP--VLNFDPPIWSPK-NYTLTVVSETELKLELAEGSLWN----KLPGALMVKGINVGDGEVELADG---KGVKVATILEDPAVTAADMHIYTTHTKHFPVRGAGFVSVQDPG----KPPLIVIDGISAANYKIQDNWHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQG-VQIAIVREDS 612
            QSSK P+ I G GF  +   VL +   +     NYT    S + L LEL +GS W      LPG LM+  ++ G G + +      KG  VAT+ EDP V      +Y TH+    + G+GF   Q        P L+  + IS     + +  H   + + L +G  W+  +     P+K+VSID+GAG    P G V I  +  D+
Sbjct:  262 QSSKGPVQISGQGFSSDQLNVLRWANGLRGKGVNYTTVQASSSYLSLELKQGSKWRANGQNLPGPLMLLAVDAGAGFIPVGPTEAKKGRIVATVFEDPHVRPNSKVLYQTHSHQVWIVGSGFTRNQYSTVVTFSPNLVNGEDISVI---VHNRTH---ILVSLFNGKKWSEASG----PLKVVSIDSGAGPFALPNGGVTIGTIESDA 459          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig872.16866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LG95_ECTSI2.150e-16677.56Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ecto... [more]
A0A6H5JWG4_9PHAE9.860e-5757.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLV2_9STRA5.860e-5539.27Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Trib... [more]
A0A836CM60_9STRA5.320e-5137.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XT65_HETAK9.640e-3633.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XT52_HETAK1.000e-3533.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FRJ9_ECTSI8.470e-3031.75Trypsin domain protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6U1PF74_9STRA7.440e-2033.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YHY7_9STRA1.810e-1831.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2B105_9STRA9.430e-1232.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig872contigS-dermatodea_contig872:19549..24710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score499.2
Seed ortholog evalue1.4e-138
Seed eggNOG ortholog2880.D8LG95
EggNOG OGs2D060@1,2SCYI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpeptidase S1 and S6, chymotrypsin/Hap
Ec32 orthologEc-17_004230.1
Exons6
Model size939
Cds size939
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig872.16866.1prot_S-dermatodea_contig872.16866.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig872 19549..24710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.92422-CDS-S-dermatodea_contig872:19548..196661622925361.92422-CDS-S-dermatodea_contig872:19548..19666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 19549..19666 -
1694079881.6901603-CDS-S-dermatodea_contig872:19548..196661694079881.6901603-CDS-S-dermatodea_contig872:19548..19666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 19549..19666 -
1622925361.9400883-CDS-S-dermatodea_contig872:20582..207251622925361.9400883-CDS-S-dermatodea_contig872:20582..20725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 20583..20725 -
1694079881.7043023-CDS-S-dermatodea_contig872:20582..207251694079881.7043023-CDS-S-dermatodea_contig872:20582..20725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 20583..20725 -
1622925361.949962-CDS-S-dermatodea_contig872:21790..218881622925361.949962-CDS-S-dermatodea_contig872:21790..21888Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 21791..21888 -
1694079881.716866-CDS-S-dermatodea_contig872:21790..218881694079881.716866-CDS-S-dermatodea_contig872:21790..21888Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 21791..21888 -
1622925361.9661734-CDS-S-dermatodea_contig872:22563..226991622925361.9661734-CDS-S-dermatodea_contig872:22563..22699Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 22564..22699 -
1694079881.7274966-CDS-S-dermatodea_contig872:22563..226991694079881.7274966-CDS-S-dermatodea_contig872:22563..22699Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 22564..22699 -
1622925361.9746218-CDS-S-dermatodea_contig872:23455..236561622925361.9746218-CDS-S-dermatodea_contig872:23455..23656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 23456..23656 -
1694079881.7368119-CDS-S-dermatodea_contig872:23455..236561694079881.7368119-CDS-S-dermatodea_contig872:23455..23656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 23456..23656 -
1622925361.9867985-CDS-S-dermatodea_contig872:24467..247101622925361.9867985-CDS-S-dermatodea_contig872:24467..24710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 24468..24710 -
1694079881.7487955-CDS-S-dermatodea_contig872:24467..247101694079881.7487955-CDS-S-dermatodea_contig872:24467..24710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig872 24468..24710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig872.16866.1

>prot_S-dermatodea_contig872.16866.1 ID=prot_S-dermatodea_contig872.16866.1|Name=mRNA_S-dermatodea_contig872.16866.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=313bp
MVPPPYPYPCSQSSKEPLHIMGTGFKGEPVLNFDPPIWSPKNYTLTVVSE
TELKLELAEGSLWNKLPGALMVKGINVGDGEVELADGKGVKVATILEDPA
VTAADMHIYTTHTKHFPVRGAGFVSVQDPGKPPLIVIDGISAANYKIQDN
WHNGVMNLQLLDGGSWAAVTEGGTTPIKIVSIDTGAGVVLFPQGVQIAIV
REDSTTALCEDSCSFADDGQCDEPGVAFGTSSSYAGGSYSSYYSDILSYN
PYGLGWGYDDDANSFLATNDYSEMYRYAGYDTTYQYYGMSDDGFFSGMAP
CEVGTDCTDCGVK
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mRNA from alignment at S-dermatodea_contig872:19549..24710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig872.16866.1 ID=mRNA_S-dermatodea_contig872.16866.1|Name=mRNA_S-dermatodea_contig872.16866.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5162bp|location=Sequence derived from alignment at S-dermatodea_contig872:19549..24710- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCCCCCCCCTTACCCTTATCCTTGCTCGCAGTCCTCGAAGGAGCC CCTGCACATCATGGGCACGGGGTTCAAGGGTGAACCCGTCCTTAACTTCG ACCCCCCTATCTGGTCTCCGAAGAACTACACCCTTACCGTTGTGTCGGAG ACGGAGTTGAAGCTCGAGCTGGCGGAGGGCTCGCTGTGGAACAAGCTCCC GGGTGCTTTGATGGTGAAGGGGATCAACGTTGGGGACGGAGAGGTGAGCT AATACAGTAGTTTGTAGTGTATTCTGTACACAGTAGCTGGGCTTGTGTCG TGTGTGTGGATTATATGGCGTAAGGAAAAAATGTTTGGGGATGGAGCGGT GATGCGTTTTTATTGATTTGGATGCACCGTCCAACCAACCCATGGCATAC TTGGACCGGTTTGACGTCGTAAACGCAAGGATGGCGACCAGCACAAACGC ACCCTGGCCGGTGAACCAAAAATCTGGCATATCGCTCCGTCCTGGCGTTG TTGGGACGCGTGATCTGTGTCTGCCTGTCTGGTTTCGACCTGCGTTGAAC ATCAGTACCCCCCCCACCAACAAAAAAGACAAGCCCTCCCCCCGCTCCCC TGGGGGTGTAGCTATACTGGGGGATAAGAAGTGGCCTGAGAAGGCGAGAA GTGATGTACACAGAATAGGAAAAACATATTTTCGCCACCTTTGGCAGGGT AGGAAGGAACGATTGGCCATCCGCGATATATAGATCGATCCTGTGGGAAC AATGCTCCTTCCTCTCGAGGACGCGTGGTGGTCAACGAACGGTCTATCAT AGTATAACAGCGAAGGCATGCAAACCATGAGTACGCCCCCCCCACCCCCC CCCCCACGCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCAACA CACCNNNNNNNNNNTTGGGACAGACTCTCCCCCCCTCCGCAGACGGCGCG CGGGCAACACACCCCTTTCTCACTTTAACCCCCCAACGCCCACCAACCAA TCATCCCCCCCCCCCCCCCCCCCCTCCCTCCTTCCCACAAAAACGCCTCC TCAGGTGGAACTTGCTGACGGCAAGGGCGTGAAGGTGGCTACTATCCTCG AGGACCCTGCCGTCACCGCGGCGGACATGCACATCTACACCACCCACACC AAGCACTTCCCCGTGCGCGGAGCCGGGTTTGTGTCTGTGCAGGACCCCGG AAAGCCTCCCTTGATCGTGATTGACGGTATCTCTGCCGCTAACTACAAGA TCCAGGTAATCGTATACTGTAGTATAAGATAGAGGAATGCAAACATAGGG AAATGTGTTGAGAAAATCGACTCTTTTTTTCTGTCGCGCAGGAGTTATTA ATATCAATAGAAGGCGTTTTTCCATTTTGCTGCGCTCGCGCCTGATTGGC CAGCCTATCTCAGATCCCGTTTCCGGATTGCGTTAGTATGATGTTGGTTG ACCGGCCGACAAGCCCTCCTCCCGTTAGATTTCGATTGCTCGGAACTGCT GTGCTGCTTGGCTGGATTTGATAGTTTTGTCGCGTGTGTATCATACGACT ATTAATACGTTGATTGGGCAGAAACATGGCATAAAAGACATTTTGGCACG GCGAAATTCCTCACACGATTGTTTGGAAAATTCGACATGATATGTATGCA TACGTCAACTCTAAATCTCTATGGTATCGTATTAATTAATGCAACAATGA CCGATTGTGTATATTGATTTTAGACAAGGATGCTGTCTGATGCCAACAAC TTGATGTTTGTGTTGAGCGTTTTTTCTTTTTTTATAAAAGCGAAAACACG GCTGAGCAGCGACACGCACAGCAGCTCGACCGCGTTCGACCTCCGTGTCG CGTTCCGTCGGCATATCATCCTGCCAACGCACACCTCACACGGGCGTGTA GCCGTGGCTACCCACTAGTTGATTGTTAAAGGTGCTAAGCCGTATCACTG AAAAATATGTATATGTATATATAATTTGTGTGATGAGAAATGTATTTGTT TTGTTTGGCAGGACAACTGGCACAACGGCGTGATGAACCTCCAGCTGCTG GACGGTGGGTCGTGGGCGGCGGTGACCGAGGGAGGAACGACGCCTATCAA GATCGTCTCCATCGACACCGGGGCTGGCGTTGTTTTGTTCCCTCAGGGTA CAGAAACAAATCACAACCATTTTTTTTTTCCCTCGTTTTCTTTTCTCCCT CTTTTTTTCCCCCCCTCTTTTCCCTTTTCCCTCTCTTTTTTGTTTTTTGT CTCTAGAGTCTATTTGTGCGCTGATTTACGTATTACTCTCACATGAATAG AGGTACGCACAACGGTTAGGGTTAAAAAACGGTGGTTGGAAAAAAATGTA ACAAATTATCGTCTCTTTTAGATATCCCTTTTTTTTGCCTGCTTTTTCTG TCTTTGGCTACTATTAATACAATAGTTTAAAGCTTTACTATAGACTACAA GTATCCGTAGGGGATTTGTTTTTTTTACATTTACTCCCATTAAAAAAGAA ATGTTCAGGTCCAGAGCTTTAGTTCCATGCTTATTTCTTTTGACATACAG AAACGACACAGGACAGTTGAAAAATTGTCAAAAGTAGTTTCAGGTACCTG TATCATACAGTTACAAGTATATACTGTACTTTGTCTTGCCATGGGACACG TCTTCAAGGTTAACCACAATATCATATTGAATCTTATACAAGTACAGACA GTAATTACTTTATTGTCGAAAAATCGTACGCCTTACGGCCATATTTACGT TAACACCAACTATTTTTCCTTGTCGGGTCGCTTGTTGTTGGTGTTGTTGT GTGTTGTTGTGTTTTGTTGCAGGCGTTCAGATCGCGATCGTGCGGGAGGA CAGCACGACTGCTCTCTGTGAGGACAGCTGCTCCTTCGCTGACGACGGGC AGTGCGATGAGCCTGGAGTGGTAAGGGAGAAGAGAGAAGGGTGTTTGACC GATTTTGTGCTACAATTACGTTTTTTTGTTGTTTTTACTTTATTTTATAC GTCACTTTTTTTTTCTCCCATTTTTGTTGAGTATTGAAACCACGTTTTTT TTTAGTAGAGCTACATGGTGCGAGAGTGCTGAATAACGAGTGCACCCGCG AATAAAATCTAAGGTAAGAAGATACAGGAGATGGGAGATGGGATGATAGC GTTGTGTATAGTATATCGTGTGTTGTGTATTTCAAATATTACTAGTATTA GTGTATTGTATATACAGTACTGTGTATAGTATATACTACCAGTGTATAGT ATACTGTAGTGTATATAGAAACAGTGTGTAGTATAGTGTACAGTGTATAG AAACAGTTTATACTGTAGTGTATCGTGTGTATCGTGTGTATGGTACAGTG TATAGTACTGTACATATCATAGTACCGGAGGCAAGAGATCGGATGCTTCA TCCCTTGTCACCACAGACGGGGTTCGGAAAGGAAAAGCTTGAAATATTGC TCGAATCCCCGTCTCGTGCGATTGTAGGGATCTGAGTCAACTAAACTATT TGCGAGTATTTGAGTCAACTAAATACTTGCTTTTGGGTCCCCAGGACGTG GATTCGAGTCTCTCTGAGGTCACTTTTTTTTCTTTTTTTTTCTTCCCTCC TCTTTTTTTCCTCCTCTCTTTCTTGTTCCTTCTTGCTTCCCGTGTTGACC TCAATCGGCAAATAACCGAAAGTAGTTGATCATTTAGTTGTACAGGGTGT GAATATTTGCATACTCACACTGTACTCATACATGATGCACTATAATATTA CTAACGGTTGGTGTTACTGATACTTGTATTATACGAAGTTGATTGATTGA TTGATTGATTGATTTGCACACGTATAGCCGATCGGCATAATCCGACCCNN NNNNNNNNGAGAAAATAACTAATCAGAATTCTACTTCTACTATACACCGT ACCGCCCCTGATACTTACTATGGTACAAGGTATGATGTCAATATTAACAC GTTTCCTTTCTATCCTCGTCTCTTGTTGTTGGCAGGCCTTCGGAACCTCG AGCAGCTACGCCGGAGGCTCGTACAGCAGCTACTATTCGGACATCCTTAG CTACAACCCCTACGGGCTTGGGTGGGGCTACGACGATGATGCCAACAGCT TCCTCGCCACCAACGATTACAGCGAGATGTGAGAATCAAATGGCCACGGA GGGCAGATTTTGTGTTTTGATAATCCAGTGCTGGAGAGCGAATCGAGACA TCGATAGTTGGCGTCGATTTCAATATCCATGTAGTACTGACTGTGTATAC TTGTATATACATATGTTGGATTAAAAAAACGTTCAGGGTAGTTTTGAGTA AGTTGATAAAACTCTATCGATTATCATGTTAGCTAGCATTCAAGAGATGT TGATCGAAGTAGCGTCGGTTTCAACATTCATGTGTACCTAATCATCAATG ATGATTCACTCTAACCGCAGCGTGCAGATTATTTAACATACTATTAGGGG GGAATAGACTATACCATAGTTACCATAGTTAACTTTAACAGGTCCAAAGT TGCCACAAGTTTCAAACTAGAAAAATCGAATAGGCTTGAATATTCGAGAT TTCAAGGTCGGTGTTGTTGTGTATGGCCATATCTCGTGTCTTTTTTGTTT TCGTGAGATTTTTGTTGTTTGGGTTTTTATGGTCGGAATAGCATGATAGG GTATTATATTCATGGTTATGAGATTTGTACCTGATTACTTGATTATAGTG TACCTCCGTAATATAGTCCTGCAAACGTAACAAAATCTTCCAGGCCTGTT CAGGGAAAACACACAAAAAAATAAATGTGTAACCCTCCGCGTACACTGTA CATAATATGTTCGACTGGGTGCTCTACTCTACACCTGTAATATAGAGTTA TAATACTATTACTACACACGGTGTTGATGCCGTGTCAATTGGACTGAAGC ATGATTTTATAGTACGCTTTTATATACCTCTGCTGAAGACTCGGGAGAGA GAGTTGATCGAAAAATAATGAATCAACCCCTCACCTTATACTCTTATGGT GACACTTTTTGTTGTCTCCTTACATGGAAATTTACTGGCGGCAGGTACCG CTACGCGGGCTACGACACGACCTACCAGTACTACGGGATGAGCGATGACG GGTTCTTCAGCGGTATGGCACCCTGCGAGGTCGGAACCGACTGCACCGAT TGCGGTGTCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig872:19549..24710-

>mRNA_S-dermatodea_contig872.16866.1 ID=mRNA_S-dermatodea_contig872.16866.1|Name=mRNA_S-dermatodea_contig872.16866.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at S-dermatodea_contig872:19549..24710- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCCCCCCCCTTACCCTTATCCTTGCTCGCAGTCCTCGAAGGAGCC
CCTGCACATCATGGGCACGGGGTTCAAGGGTGAACCCGTCCTTAACTTCG
ACCCCCCTATCTGGTCTCCGAAGAACTACACCCTTACCGTTGTGTCGGAG
ACGGAGTTGAAGCTCGAGCTGGCGGAGGGCTCGCTGTGGAACAAGCTCCC
GGGTGCTTTGATGGTGAAGGGGATCAACGTTGGGGACGGAGAGATGGTGC
CCCCCCCTTACCCTTATCCTTGCTCGCAGTCCTCGAAGGAGCCCCTGCAC
ATCATGGGCACGGGGTTCAAGGGTGAACCCGTCCTTAACTTCGACCCCCC
TATCTGGTCTCCGAAGAACTACACCCTTACCGTTGTGTCGGAGACGGAGT
TGAAGCTCGAGCTGGCGGAGGGCTCGCTGTGGAACAAGCTCCCGGGTGCT
TTGATGGTGAAGGGGATCAACGTTGGGGACGGAGAGGTGGAACTTGCTGA
CGGCAAGGGCGTGAAGGTGGCTACTATCCTCGAGGACCCTGCCGTCACCG
CGGCGGACATGCACATCTACACCACCCACACCAAGCACTTCCCCGTGCGC
GGAGCCGGGTTTGTGTCTGTGCAGGACCCCGGAAAGCCTCCCTTGATCGT
GATTGACGGTATCTCTGCCGCTAACTACAAGATCCAGGTGGAACTTGCTG
ACGGCAAGGGCGTGAAGGTGGCTACTATCCTCGAGGACCCTGCCGTCACC
GCGGCGGACATGCACATCTACACCACCCACACCAAGCACTTCCCCGTGCG
CGGAGCCGGGTTTGTGTCTGTGCAGGACCCCGGAAAGCCTCCCTTGATCG
TGATTGACGGTATCTCTGCCGCTAACTACAAGATCCAGGACAACTGGCAC
AACGGCGTGATGAACCTCCAGCTGCTGGACGGTGGGTCGTGGGCGGCGGT
GACCGAGGGAGGAACGACGCCTATCAAGATCGTCTCCATCGACACCGGGG
CTGGCGTTGTTTTGTTCCCTCAGGGACAACTGGCACAACGGCGTGATGAA
CCTCCAGCTGCTGGACGGTGGGTCGTGGGCGGCGGTGACCGAGGGAGGAA
CGACGCCTATCAAGATCGTCTCCATCGACACCGGGGCTGGCGTTGTTTTG
TTCCCTCAGGGCGTTCAGATCGCGATCGTGCGGGAGGACAGCACGACTGC
TCTCTGTGAGGACAGCTGCTCCTTCGCTGACGACGGGCAGTGCGATGAGC
CTGGAGTGGCGTTCAGATCGCGATCGTGCGGGAGGACAGCACGACTGCTC
TCTGTGAGGACAGCTGCTCCTTCGCTGACGACGGGCAGTGCGATGAGCCT
GGAGTGGCCTTCGGAACCTCGAGCAGCTACGCCGGAGGCTCGTACAGCAG
CTACTATTCGGACATCCTTAGCTACAACCCCTACGGGCTTGGGTGGGGCT
ACGACGATGATGCCAACAGCTTCCTCGCCACCAACGATTACAGCGAGATG
CCTTCGGAACCTCGAGCAGCTACGCCGGAGGCTCGTACAGCAGCTACTAT
TCGGACATCCTTAGCTACAACCCCTACGGGCTTGGGTGGGGCTACGACGA
TGATGCCAACAGCTTCCTCGCCACCAACGATTACAGCGAGATGTACCGCT
ACGCGGGCTACGACACGACCTACCAGTACTACGGGATGAGCGATGACGGG
TTCTTCAGCGGTATGGCACCCTGCGAGGTCGGAACCGACTGCACCGATTG
CGGTGTCAAGGTACCGCTACGCGGGCTACGACACGACCTACCAGTACTAC
GGGATGAGCGATGACGGGTTCTTCAGCGGTATGGCACCCTGCGAGGTCGG
AACCGACTGCACCGATTGCGGTGTCAAG
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