mRNA_S-dermatodea_contig87173.16863.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87173.16863.1
Unique NamemRNA_S-dermatodea_contig87173.16863.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A6A5KRD3_LUPAL (Uncharacterized protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KRD3_LUPAL)

HSP 1 Score: 122 bits (306), Expect = 1.750e-33
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 2
Query:   74 SCHY--GTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
            SCH+  G  G    DKPEEGGDDVKSS PLW GLHTCYNG  +  +    E I K+ LSSD  LQL  MKLESLVIA+QH AVN   GLVHTARH +GVGF
Sbjct:   19 SCHHSVGHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGF 119          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A382FH34_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FH34_9ZZZZ)

HSP 1 Score: 118 bits (296), Expect = 3.710e-32
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 2
Query:   68 VPSCHYGTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
            +PS + G       DK EEGGDDVKSS PL AGLHTCYNG  +  Q+   + I K++LSSDW LQL  MKLESLVI +QH  VN   GLVHTARH +GVGF
Sbjct:    1 MPSGYAGHSKETAGDKLEEGGDDVKSSWPLRAGLHTCYNGGDSGKQFRKKKQISKSHLSSDWTLQLESMKLESLVIVDQHATVNTFSGLVHTARHAMGVGF 101          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A7S2JKY0_9EUKA (Uncharacterized protein ycf68 (Fragment) n=2 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JKY0_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 7.360e-32
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 2
Query:   68 VPSCHYGTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
            +PS + G  G    DKPEEGGDDVKSS PL AGLHTCYNG  + ++  +PEPI K   SSD  LQL  MK+ESLVIA+QH AVN   GLVHTARH +GVG A
Sbjct:   46 LPSGNAGHFGETAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGMRRGDPEPIPKNRPSSDCTLQLECMKVESLVIADQHAAVNTFPGLVHTARHTMGVGHA 147          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: R4IV41_VICFA (Uncharacterized protein ycf68 n=2 Tax=Pentapetalae TaxID=1437201 RepID=R4IV41_VICFA)

HSP 1 Score: 117 bits (294), Expect = 1.460e-31
Identity = 60/85 (70.59%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  119 EEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
            EEGGDDVKS+ PLWAG HTCYNG YN  Q    E I K  LSSD  LQL  MKLESLVIA+QH AVNM  G VHTARH LG+GFA
Sbjct:   13 EEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFA 97          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: M4ZFA2_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 TaxID=1245469 RepID=M4ZFA2_9BRAD)

HSP 1 Score: 115 bits (288), Expect = 3.110e-31
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  119 EEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
            EEGGDDVKSS PL AGLHTCYNG  +     NP  I K+ LSSDW LQL PMKLESLVI +QH  VN   GLVHTARH +GVGF
Sbjct:    5 EEGGDDVKSSWPLRAGLHTCYNGGDSGKLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMGVGF 88          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A6A5KX99_LUPAL (Uncharacterized protein ycf68 n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KX99_LUPAL)

HSP 1 Score: 118 bits (296), Expect = 6.940e-31
Identity = 65/111 (58.56%), Postives = 71/111 (63.96%), Query Frame = 2
Query:   38 WLSPLTSATPVPSCHYGTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
            W+       P      GT G    DKPEEGGDDVKSS PLW GLHTCYNG  +  +    E I K+ LSSD  LQL  MKLESLVIA+QH AVN   GLVHTARH +GVGF
Sbjct:   48 WVKSRNERNPYLGHSGGTAG----DKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGF 154          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A371IID8_MUCPR (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371IID8_MUCPR)

HSP 1 Score: 118 bits (295), Expect = 9.320e-31
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  110 DKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
            D  EEGGDDVKS+ PLWAG HTCYNG YN  Q    E I K  LSSD  LQL  MKLESLVIA+QH AVNM  G VHTARH LG+GFA
Sbjct:   90 DIQEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFA 177          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: M0ZXY3_SOLTU (Uncharacterized protein ycf68 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M0ZXY3_SOLTU)

HSP 1 Score: 115 bits (287), Expect = 1.340e-30
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  119 EEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
            EEGGDDVK + PLWAG H CYNG YN  Q    E I K  LSSD  LQL  MKLES VIA+QHVAVNM  GLVHTARH LG+GFA
Sbjct:   31 EEGGDDVKPAWPLWAGPHMCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESPVIADQHVAVNMYPGLVHTARHTLGIGFA 115          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A6A5L5T7_LUPAL (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5T7_LUPAL)

HSP 1 Score: 117 bits (294), Expect = 2.110e-30
Identity = 62/95 (65.26%), Postives = 67/95 (70.53%), Query Frame = 2
Query:   86 GTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
            G  G    DKPEEGGDDVKSS PLW GLHTCYNG  +  +    E I K+ LSSD  LQL  MKLESLVIA+QH AVN   GLVHTARH +GVGF
Sbjct:   83 GHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGF 177          
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: UPI0009050DF8 (uncharacterized protein LOC109230515 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009050DF8)

HSP 1 Score: 114 bits (286), Expect = 2.390e-30
Identity = 60/92 (65.22%), Postives = 64/92 (69.57%), Query Frame = 2
Query:   98 RLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
            R   D  EEGGDDVKS+ PLWAG HTCYNG YN  Q    E I K  LSSD  LQL  MKLESLVI++QH AVNM  G VHTA H LG+GFA
Sbjct:    6 RTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAEQIRKDCLSSDCSLQLGNMKLESLVISDQHAAVNMYPGPVHTACHTLGIGFA 97          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5KRD3_LUPAL1.750e-3364.36Uncharacterized protein ycf68 n=1 Tax=Lupinus albu... [more]
A0A382FH34_9ZZZZ3.710e-3260.40Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7S2JKY0_9EUKA7.360e-3262.75Uncharacterized protein ycf68 (Fragment) n=2 Tax=C... [more]
R4IV41_VICFA1.460e-3170.59Uncharacterized protein ycf68 n=2 Tax=Pentapetalae... [more]
M4ZFA2_9BRAD3.110e-3169.05Uncharacterized protein n=1 Tax=Bradyrhizobium oli... [more]
A0A6A5KX99_LUPAL6.940e-3158.56Uncharacterized protein ycf68 n=2 Tax=Lupinus albu... [more]
A0A371IID8_MUCPR9.320e-3169.32Uncharacterized protein ycf68 (Fragment) n=1 Tax=M... [more]
M0ZXY3_SOLTU1.340e-3069.41Uncharacterized protein ycf68 n=1 Tax=Solanum tube... [more]
A0A6A5L5T7_LUPAL2.110e-3065.26Uncharacterized protein ycf68 (Fragment) n=1 Tax=L... [more]
UPI0009050DF82.390e-3065.22uncharacterized protein LOC109230515 n=1 Tax=Nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87173contigS-dermatodea_contig87173:201..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size376
Cds size105
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.8130662-UTR-S-dermatodea_contig87173:200..4711622925361.8130662-UTR-S-dermatodea_contig87173:200..471Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87173 201..471 +
1694079881.649693-UTR-S-dermatodea_contig87173:200..4711694079881.649693-UTR-S-dermatodea_contig87173:200..471Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87173 201..471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.8233566-CDS-S-dermatodea_contig87173:471..5761622925361.8233566-CDS-S-dermatodea_contig87173:471..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87173 472..576 +
1694079881.659096-CDS-S-dermatodea_contig87173:471..5761694079881.659096-CDS-S-dermatodea_contig87173:471..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87173 472..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87173.16863.1prot_S-dermatodea_contig87173.16863.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87173 472..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87173.16863.1

>prot_S-dermatodea_contig87173.16863.1 ID=prot_S-dermatodea_contig87173.16863.1|Name=mRNA_S-dermatodea_contig87173.16863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=35bp
MKLESLVIANQHVAVNMSLGLVHTARHILGVGFA*
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mRNA from alignment at S-dermatodea_contig87173:201..576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87173.16863.1 ID=mRNA_S-dermatodea_contig87173.16863.1|Name=mRNA_S-dermatodea_contig87173.16863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=376bp|location=Sequence derived from alignment at S-dermatodea_contig87173:201..576+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTT TAACGAGCGCAACCCCTGTTCCTTCTTGCCATTATGGAACTGAAGGAAGA CTGCCGGAAGATAAGCCGGAGGAGGGTGGGGATGACGTCAAGTCCTCATG ACCCTTATGGGCTGGGCTACACACGTGCTACAATGGTAAGTACAATAAGT TGCAATGGAGCAATCCGGAGCCAATCTTGAAAGCTTATCTTAGTTCGGAT TGGGGGCTGCAACTCGCCCCCATGAAGTTGGAATCACTAGTAATCGCGAA TCAGCACGTCGCGGTGAATATGTCACTGGGCCTTGTACACACCGCCCGTC ACATCCTGGGAGTTGGTTTTGCCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87173:201..576+

>mRNA_S-dermatodea_contig87173.16863.1 ID=mRNA_S-dermatodea_contig87173.16863.1|Name=mRNA_S-dermatodea_contig87173.16863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig87173:201..576+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTTGGAATCACTAGTAATCGCGAATCAGCACGTCGCGGTGAATAT
GTCACTGGGCCTTGTACACACCGCCCGTCACATCCTGGGAGTTGGTTTTG
CCTGAATGAAGTTGGAATCACTAGTAATCGCGAATCAGCACGTCGCGGTG
AATATGTCACTGGGCCTTGTACACACCGCCCGTCACATCCTGGGAGTTGG
TTTTGCCTGA
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