mRNA_S-dermatodea_contig87173.16863.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A6A5KRD3_LUPAL (Uncharacterized protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KRD3_LUPAL) HSP 1 Score: 122 bits (306), Expect = 1.750e-33 Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 2
Query: 74 SCHY--GTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
SCH+ G G DKPEEGGDDVKSS PLW GLHTCYNG + + E I K+ LSSD LQL MKLESLVIA+QH AVN GLVHTARH +GVGF
Sbjct: 19 SCHHSVGHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGF 119
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A382FH34_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FH34_9ZZZZ) HSP 1 Score: 118 bits (296), Expect = 3.710e-32 Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 2
Query: 68 VPSCHYGTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
+PS + G DK EEGGDDVKSS PL AGLHTCYNG + Q+ + I K++LSSDW LQL MKLESLVI +QH VN GLVHTARH +GVGF
Sbjct: 1 MPSGYAGHSKETAGDKLEEGGDDVKSSWPLRAGLHTCYNGGDSGKQFRKKKQISKSHLSSDWTLQLESMKLESLVIVDQHATVNTFSGLVHTARHAMGVGF 101
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A7S2JKY0_9EUKA (Uncharacterized protein ycf68 (Fragment) n=2 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JKY0_9EUKA) HSP 1 Score: 119 bits (299), Expect = 7.360e-32 Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 2
Query: 68 VPSCHYGTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
+PS + G G DKPEEGGDDVKSS PL AGLHTCYNG + ++ +PEPI K SSD LQL MK+ESLVIA+QH AVN GLVHTARH +GVG A
Sbjct: 46 LPSGNAGHFGETAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGMRRGDPEPIPKNRPSSDCTLQLECMKVESLVIADQHAAVNTFPGLVHTARHTMGVGHA 147
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: R4IV41_VICFA (Uncharacterized protein ycf68 n=2 Tax=Pentapetalae TaxID=1437201 RepID=R4IV41_VICFA) HSP 1 Score: 117 bits (294), Expect = 1.460e-31 Identity = 60/85 (70.59%), Postives = 63/85 (74.12%), Query Frame = 2
Query: 119 EEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
EEGGDDVKS+ PLWAG HTCYNG YN Q E I K LSSD LQL MKLESLVIA+QH AVNM G VHTARH LG+GFA
Sbjct: 13 EEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFA 97
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: M4ZFA2_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 TaxID=1245469 RepID=M4ZFA2_9BRAD) HSP 1 Score: 115 bits (288), Expect = 3.110e-31 Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 2
Query: 119 EEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
EEGGDDVKSS PL AGLHTCYNG + NP I K+ LSSDW LQL PMKLESLVI +QH VN GLVHTARH +GVGF
Sbjct: 5 EEGGDDVKSSWPLRAGLHTCYNGGDSGKLRGNPSQISKSRLSSDWALQLEPMKLESLVIVDQHATVNTFPGLVHTARHTMGVGF 88
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A6A5KX99_LUPAL (Uncharacterized protein ycf68 n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KX99_LUPAL) HSP 1 Score: 118 bits (296), Expect = 6.940e-31 Identity = 65/111 (58.56%), Postives = 71/111 (63.96%), Query Frame = 2
Query: 38 WLSPLTSATPVPSCHYGTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
W+ P GT G DKPEEGGDDVKSS PLW GLHTCYNG + + E I K+ LSSD LQL MKLESLVIA+QH AVN GLVHTARH +GVGF
Sbjct: 48 WVKSRNERNPYLGHSGGTAG----DKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGF 154
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A371IID8_MUCPR (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371IID8_MUCPR) HSP 1 Score: 118 bits (295), Expect = 9.320e-31 Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 2
Query: 110 DKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
D EEGGDDVKS+ PLWAG HTCYNG YN Q E I K LSSD LQL MKLESLVIA+QH AVNM G VHTARH LG+GFA
Sbjct: 90 DIQEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFA 177
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: M0ZXY3_SOLTU (Uncharacterized protein ycf68 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M0ZXY3_SOLTU) HSP 1 Score: 115 bits (287), Expect = 1.340e-30 Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 2
Query: 119 EEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
EEGGDDVK + PLWAG H CYNG YN Q E I K LSSD LQL MKLES VIA+QHVAVNM GLVHTARH LG+GFA
Sbjct: 31 EEGGDDVKPAWPLWAGPHMCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESPVIADQHVAVNMYPGLVHTARHTLGIGFA 115
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: A0A6A5L5T7_LUPAL (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5T7_LUPAL) HSP 1 Score: 117 bits (294), Expect = 2.110e-30 Identity = 62/95 (65.26%), Postives = 67/95 (70.53%), Query Frame = 2
Query: 86 GTEGRLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGF 370
G G DKPEEGGDDVKSS PLW GLHTCYNG + + E I K+ LSSD LQL MKLESLVIA+QH AVN GLVHTARH +GVGF
Sbjct: 83 GHSGGTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGF 177
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Match: UPI0009050DF8 (uncharacterized protein LOC109230515 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009050DF8) HSP 1 Score: 114 bits (286), Expect = 2.390e-30 Identity = 60/92 (65.22%), Postives = 64/92 (69.57%), Query Frame = 2
Query: 98 RLPEDKPEEGGDDVKSS*PLWAGLHTCYNGKYNKLQWSNPEPILKAYLSSDWGLQLAPMKLESLVIANQHVAVNMSLGLVHTARHILGVGFA 373
R D EEGGDDVKS+ PLWAG HTCYNG YN Q E I K LSSD LQL MKLESLVI++QH AVNM G VHTA H LG+GFA
Sbjct: 6 RTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAEQIRKDCLSSDCSLQLGNMKLESLVISDQHAAVNMYPGPVHTACHTLGIGFA 97 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87173.16863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig87173.16863.1 >prot_S-dermatodea_contig87173.16863.1 ID=prot_S-dermatodea_contig87173.16863.1|Name=mRNA_S-dermatodea_contig87173.16863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=35bp MKLESLVIANQHVAVNMSLGLVHTARHILGVGFA*back to top mRNA from alignment at S-dermatodea_contig87173:201..576+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig87173.16863.1 ID=mRNA_S-dermatodea_contig87173.16863.1|Name=mRNA_S-dermatodea_contig87173.16863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=376bp|location=Sequence derived from alignment at S-dermatodea_contig87173:201..576+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig87173:201..576+ >mRNA_S-dermatodea_contig87173.16863.1 ID=mRNA_S-dermatodea_contig87173.16863.1|Name=mRNA_S-dermatodea_contig87173.16863.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig87173:201..576+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |