mRNA_S-dermatodea_contig8712.16854.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8712.16854.1
Unique NamemRNA_S-dermatodea_contig8712.16854.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: D7FWP0_ECTSI (Beta-hydroxyacyl-ACP dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP0_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.230e-72
Identity = 119/155 (76.77%), Postives = 129/155 (83.23%), Query Frame = 1
Query:    4 LAPAAAFVVGPSTLTGATTRQAARSAAGPALRMGEDAE----KKAAKPTALDISAGIAHPEAVFTVPENILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            LAP+A F+   +  T A    AA S+  PALRM E+A     ++A  PTA DIS GIAHPEA+FTVPENILKVLPHRYPFALVDKVLHF PGK I+G+KCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV
Sbjct:   24 LAPSA-FMGSNTAPTAAARAAAASSSRVPALRMAEEAAAGEGEEAPAPTASDISKGIAHPEAIFTVPENILKVLPHRYPFALVDKVLHFVPGKSIIGIKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 177          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A836C6N5_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6N5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 8.530e-57
Identity = 85/102 (83.33%), Postives = 93/102 (91.18%), Query Frame = 1
Query:  151 SAGIAHPEAVFTVPENILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            S GIAHPEA+FTV E+I K+LPHRYPFALVDKV++FEPGKR VG+KCITNNEPQFTGHFPD PIMPGVLQVEAMAQLGG+I LQ P SDG+GTFFF GVDGV
Sbjct:   12 SKGIAHPEAIFTVDEHIAKILPHRYPFALVDKVIYFEPGKRAVGIKCITNNEPQFTGHFPDRPIMPGVLQVEAMAQLGGIIALQAPISDGKGTFFFGGVDGV 113          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A7R9UF58_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF58_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.040e-44
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  172 EAVFTVPENILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            E VF V E I  VLPHRYPFALVDKV+ FE GKR VG+KC+TNNEPQFTGHFPD PIMPGVL +EAMAQLGG+I LQEP SDG+G FFFAG++GV
Sbjct:   62 ETVFPV-EKIADVLPHRYPFALVDKVVEFEAGKRAVGIKCVTNNEPQFTGHFPDRPIMPGVLMIEAMAQLGGVIALQEPLSDGKGIFFFAGIEGV 155          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A7S3X4Z6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X4Z6_9SPIT)

HSP 1 Score: 150 bits (379), Expect = 3.360e-44
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  196 NILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
             I K+LPHRYPF LVDKV+HFE GK+ VGVK +T NEPQFTGHFPD PIMPGVL VEAMAQLGG++CLQ+P SDGQG FFFAG+DG+
Sbjct:   32 QIAKILPHRYPFLLVDKVVHFEAGKKAVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGIVCLQDPVSDGQGEFFFAGIDGI 118          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A7S3GZN9_9STRA (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZN9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.970e-44
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1
Query:  199 ILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            I K+LPHRYPF LVDKV+ FEPGKR VGVK +T NEPQFTGHFPDLPIMPGVL VEAMAQLGG++CLQ P SDG+G FFFAG+DGV
Sbjct:   13 IAKILPHRYPFLLVDKVVSFEPGKRAVGVKNVTANEPQFTGHFPDLPIMPGVLMVEAMAQLGGIVCLQAPISDGKGQFFFAGIDGV 98          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A7S2DJT4_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S2DJT4_9DINO)

HSP 1 Score: 151 bits (381), Expect = 1.220e-43
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1
Query:  193 ENILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            E + K+LPHRYPF LVDKV+ FE GKRIVGVK +T NEPQFTGHFPD PIMPGVL VEAMAQLGGL+CLQ+P SDG+G FFFAG+DG+
Sbjct:   44 EGVAKILPHRYPFLLVDKVVEFEAGKRIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQQPVSDGKGEFFFAGIDGI 131          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A0G4H2S5_VITBC (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H2S5_VITBC)

HSP 1 Score: 150 bits (380), Expect = 5.210e-43
Identity = 71/88 (80.68%), Postives = 77/88 (87.50%), Query Frame = 1
Query:  193 ENILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            E I KVLPHRYPF LVDKV+ FEPGKR VGVK I+ NEPQFTGHFP+  IMPGVLQ+EAMAQLGGL+CLQEP SDG+G FFFAGVDGV
Sbjct:   85 EAIRKVLPHRYPFLLVDKVIEFEPGKRAVGVKTISANEPQFTGHFPERAIMPGVLQIEAMAQLGGLVCLQEPLSDGKGDFFFAGVDGV 172          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A1S6K873_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gambierdiscus belizeanus TaxID=439316 RepID=A0A1S6K873_9DINO)

HSP 1 Score: 151 bits (382), Expect = 6.650e-43
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1
Query:  172 EAVFTVPENIL--KVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            E+V  V +N+   KVLPHRYPF LVDKV+ FEPGK+IVGVK +T NEPQFTGHFPD PIMPGVL VEAMAQLGGL+CLQ P SDGQG FFFAG+DG+
Sbjct:  108 ESVPLVMDNVAVAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQAPISDGQGEFFFAGIDGI 204          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A1S6K7Y0_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gambierdiscus excentricus TaxID=986170 RepID=A0A1S6K7Y0_9DINO)

HSP 1 Score: 150 bits (380), Expect = 1.190e-42
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = 1
Query:  172 EAVFTVPENIL--KVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            E V  V +N+   KVLPHRYPF LVDKV+ FEPGK+IVGVK +T NEPQFTGHFPD PIMPGVL VEAMAQLGGL+CLQ+P SDG+G FFFAG+DG+
Sbjct:  104 EGVPLVMDNVAVAKVLPHRYPFLLVDKVVAFEPGKKIVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGLVCLQDPISDGKGEFFFAGIDGI 200          
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Match: A0A6T1MGQ0_9DINO (3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1MGQ0_9DINO)

HSP 1 Score: 150 bits (379), Expect = 2.090e-42
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   67 AARSAAGPALRMGEDAEKKAAKPTALDISAGIAHPEAVFTVPENIL--KVLPHRYPFALVDKVLHFEPGKRIVGVKCITNNEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVDGV 456
            AA + AG   R   D E K AK    +  +G+   E+V  V +N+   KVLPHRYPF LVDKVL +EPGKR VGVK +T NEPQFTGHFPD PIMPGVL VEAMAQLGG++CLQ P SDGQG FFFAG++G+
Sbjct:   80 AAAARAGRVRRCSSD-EAKEAKWKGAESFSGLT--ESVPLVMDNVAVAKVLPHRYPFLLVDKVLEYEPGKRAVGVKNVTANEPQFTGHFPDRPIMPGVLMVEAMAQLGGIVCLQPPVSDGQGEFFFAGINGI 208          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8712.16854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP0_ECTSI1.230e-7276.77Beta-hydroxyacyl-ACP dehydratase n=2 Tax=Ectocarpu... [more]
A0A836C6N5_9STRA8.530e-5783.333-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7R9UF58_9STRA1.040e-4476.843-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7S3X4Z6_9SPIT3.360e-4477.01Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3GZN9_9STRA6.970e-4480.233-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A7S2DJT4_9DINO1.220e-4377.273-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A0G4H2S5_VITBC5.210e-4380.683-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A1S6K873_9DINO6.650e-4375.263-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A1S6K7Y0_9DINO1.190e-4274.233-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]
A0A6T1MGQ0_9DINO2.090e-4262.123-hydroxyacyl-[acyl-carrier-protein] dehydratase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8712contigS-dermatodea_contig8712:6836..7889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue2.9e-57
Seed eggNOG ortholog2880.D7FWP0
KEGG rclassRC00831,RC01095
KEGG koko:K02372
KEGG ReactionR04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
EggNOG free text desc.FabA-like domain
EggNOG OGs2QQPZ@2759,COG0764@1
EC4.2.1.59
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbeta-hydroxyacyl-ACP dehydratase
Ec32 orthologEc-06_001380.1
Exons2
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.4487581-CDS-S-dermatodea_contig8712:6835..71951622925361.4487581-CDS-S-dermatodea_contig8712:6835..7195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 6836..7195 +
1694079881.4691286-CDS-S-dermatodea_contig8712:6835..71951694079881.4691286-CDS-S-dermatodea_contig8712:6835..7195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 6836..7195 +
1622925361.4620612-CDS-S-dermatodea_contig8712:7793..78891622925361.4620612-CDS-S-dermatodea_contig8712:7793..7889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 7794..7889 +
1694079881.4835987-CDS-S-dermatodea_contig8712:7793..78891694079881.4835987-CDS-S-dermatodea_contig8712:7793..7889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 7794..7889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8712.16854.1prot_S-dermatodea_contig8712.16854.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8712 6836..7889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8712.16854.1

>prot_S-dermatodea_contig8712.16854.1 ID=prot_S-dermatodea_contig8712.16854.1|Name=mRNA_S-dermatodea_contig8712.16854.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
LLAPAAAFVVGPSTLTGATTRQAARSAAGPALRMGEDAEKKAAKPTALDI
SAGIAHPEAVFTVPENILKVLPHRYPFALVDKVLHFEPGKRIVGVKCITN
NEPQFTGHFPDLPIMPGVLQVEAMAQLGGLICLQEPCSDGQGTFFFAGVD
GV
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mRNA from alignment at S-dermatodea_contig8712:6836..7889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8712.16854.1 ID=mRNA_S-dermatodea_contig8712.16854.1|Name=mRNA_S-dermatodea_contig8712.16854.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1054bp|location=Sequence derived from alignment at S-dermatodea_contig8712:6836..7889+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTAGCGCCAGCTGCGGCCTTCGTCGTGGGACCGAGCACATTGACTGG CGCGACCACCAGGCAAGCGGCGAGAAGCGCCGCAGGCCCCGCGCTTAGGA TGGGCGAGGACGCCGAAAAGAAGGCCGCGAAACCGACTGCCCTCGATATC AGCGCTGGTATCGCGCACCCAGAGGCTGTCTTCACTGTGCCAGAGAACAT TCTAAAGGTTCTCCCTCACCGATACCCGTTCGCTCTCGTGGACAAGGTTC TGCACTTCGAACCCGGCAAGAGGATCGTGGGCGTCAAGTGCATCACCAAC AACGAGCCCCAGTTTACGGGGCACTTCCCGGACCTGCCCATTATGCCAGG AGTGCTGCAGGTATTGTTCCTTGTGGAGTGCATGAACGAACCAGGCCGGG TGCCATGTAGTTCGCGGGGTTCCATTTTTCATGTTTCATTGCCGGTTGAT GTTCGTGGAGAACATCTTTCCGGGCGCCCATACCAGTACACATGCCGGCC TCGCTGCATCATACAAGAGTGTCCAATGAACGAATGTGGCGTAATATGCT GTCTGGGTTTCGATGGGTGCATCGCTCCCGGCATAGGCTCTAGAGCAGTA GAGTTGTACCCCTTACGCTACCATCTACGACTTCAGCCTATTCGCTTAGG ATTGGTCGCCTTTGGGGAGCGCTCTCGCCTGCCGCATTCTCCATGTAGCA GAAACTCATGCACTGACTGACCCCAACTTTAGCGTACGATCGAAATTATA TGGAGGTGAATGTTGAGCATACAAACTTCTTGCCCACATGGCATACTTTG AATACTCCTCCTGGACAAGGCGGACCGAGCACTCCCTTAAATGCCGCAAA GTATTGCCTGATCCTTCAACTATATAGTACCAATCAACACCCATCCAAGA CAAATTTGAAAGTTCCATCCCCCATGTGCTCTCCGCCGCTACCGGCTGCC CTGCGTAGGTTGAGGCTATGGCGCAGCTTGGAGGGTTGATTTGTCTCCAG GAGCCGTGCAGCGATGGGCAGGGCACCTTCTTCTTTGCTGGGGTGGACGG GGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8712:6836..7889+

>mRNA_S-dermatodea_contig8712.16854.1 ID=mRNA_S-dermatodea_contig8712.16854.1|Name=mRNA_S-dermatodea_contig8712.16854.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig8712:6836..7889+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTAGCGCCAGCTGCGGCCTTCGTCGTGGGACCGAGCACATTGACTGG
CGCGACCACCAGGCAAGCGGCGAGAAGCGCCGCAGGCCCCGCGCTTAGGA
TGGGCGAGGACGCCGAAAAGAAGGCCGCGAAACCGACTGCCCTCGATATC
AGCGCTGGTATCGCGCACCCAGAGGCTGTCTTCACTGTGCCAGAGAACAT
TCTAAAGGTTCTCCCTCACCGATACCCGTTCGCTCTCGTGGACAAGGTTC
TGCACTTCGAACCCGGCAAGAGGATCGTGGGCGTCAAGTGCATCACCAAC
AACGAGCCCCAGTTTACGGGGCACTTCCCGGACCTGCCCATTATGCCAGG
AGTGCTGCAGCTGCTAGCGCCAGCTGCGGCCTTCGTCGTGGGACCGAGCA
CATTGACTGGCGCGACCACCAGGCAAGCGGCGAGAAGCGCCGCAGGCCCC
GCGCTTAGGATGGGCGAGGACGCCGAAAAGAAGGCCGCGAAACCGACTGC
CCTCGATATCAGCGCTGGTATCGCGCACCCAGAGGCTGTCTTCACTGTGC
CAGAGAACATTCTAAAGGTTCTCCCTCACCGATACCCGTTCGCTCTCGTG
GACAAGGTTCTGCACTTCGAACCCGGCAAGAGGATCGTGGGCGTCAAGTG
CATCACCAACAACGAGCCCCAGTTTACGGGGCACTTCCCGGACCTGCCCA
TTATGCCAGGAGTGCTGCAGGTTGAGGCTATGGCGCAGCTTGGAGGGTTG
ATTTGTCTCCAGGAGCCGTGCAGCGATGGGCAGGGCACCTTCTTCTTTGC
TGGGGTGGACGGGGTGGTTGAGGCTATGGCGCAGCTTGGAGGGTTGATTT
GTCTCCAGGAGCCGTGCAGCGATGGGCAGGGCACCTTCTTCTTTGCTGGG
GTGGACGGGGTG
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