mRNA_S-dermatodea_contig8710.16850.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8710.16850.1
Unique NamemRNA_S-dermatodea_contig8710.16850.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: D7G6P5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P5_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 3.110e-101
Identity = 142/184 (77.17%), Postives = 162/184 (88.04%), Query Frame = 1
Query:   82 VGATATNSAVTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGELL 633
            V A A  + VTHRV+FD+SIGG  + RITMGLFGNAVP TV+NFR+LCTGEAG GKVY+KPLHYK S FHR+IPQFMLQGGDFTH TGTGGESIYGGKFDDEAF P+L+H+KPGV+SMAN+GK+TNGSQFFICTVPTPWL+ KHVIFGQVEE SM++V  IEK+GSR G  S +VEITDSGEL+
Sbjct:   18 VSADADVTDVTHRVYFDISIGGTEAGRITMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKDTNGSQFFICTVPTPWLNGKHVIFGQVEEESMELVSRIEKLGSRSGALSEKVEITDSGELV 201          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A0A835ZLK1_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLK1_9STRA)

HSP 1 Score: 259 bits (662), Expect = 4.040e-85
Identity = 125/174 (71.84%), Postives = 141/174 (81.03%), Query Frame = 1
Query:  109 VTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            VT  VFFD+ I G+P  RI MGL+G AVP TV+NFR LCTGE G GKVY KPL YK S FHRIIPQFMLQGGDFTH TGTGGESIYGGKFDDEAF  +L H +PG++SMANAG NTNGSQFFI TV TPWLD KHVIFG+V E  MDVV +IEK+GS+ G P A+V++ DSGE+
Sbjct:   24 VTKMVFFDMEIDGKPGGRIVMGLYGEAVPKTVENFRALCTGEKGVGKVYHKPLTYKGSSFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPKELKHKEPGMLSMANAGPNTNGSQFFITTVATPWLDGKHVIFGKVLEG-MDVVKSIEKLGSQSGRPQAKVKVADSGEI 196          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A0A2K1IH38_PHYPA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IH38_PHYPA)

HSP 1 Score: 239 bits (609), Expect = 5.250e-77
Identity = 129/210 (61.43%), Postives = 147/210 (70.00%), Query Frame = 1
Query:    1 MARILKSLAVAAVGLFAAASAAGDVTEVGATATNSAVTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            MAR    LAV A+ L A  S A    E G       VTH+VFFDV IGGQP+ R+ MGLFG A P TV+NFR LCTGE G G +  KPLH+K S FHRIIP FM+QGGDFTH  G GGESIYG KF DE+F   L H  PG++SMANAG NTNGSQFFICTV T WLD +HV+FG+V  S MDVVY +E  G+ GGTP  +V I DSGE+
Sbjct:    1 MARTGPMLAVTALVLLATISCAQAKIEKGL----DEVTHKVFFDVEIGGQPAGRVVMGLFGKAAPKTVENFRALCTGEKGKG-LSGKPLHFKGSAFHRIIPSFMIQGGDFTHGNGRGGESIYGEKFADESFK--LKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDGRHVVFGKVL-SGMDVVYKVEAEGTSGGTPKKKVTIADSGEI 202          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A0A7J7Q6Q0_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6Q0_9CHLO)

HSP 1 Score: 234 bits (597), Expect = 3.490e-75
Identity = 118/176 (67.05%), Postives = 135/176 (76.70%), Query Frame = 1
Query:  103 SAVTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            +AVT++VFFD+ I GQP+ RI MGLFG+ VP TV+NFR LCTGE GTGK   KPLH+K S+FHR+IPQFMLQGGDFT   GTGGESIYG KF DE F   L H  PG +SMANAG NTNGSQFFI TV T WLD +HV+FG+V E  MDVVY +E +GS GG  S +V I DSGEL
Sbjct:   29 AAVTNKVFFDIEIDGQPAGRIVMGLFGDVVPKTVENFRALCTGEKGTGKS-GKPLHFKGSVFHRVIPQFMLQGGDFTRSDGTGGESIYGEKFADENFK--LKHKGPGYLSMANAGPNTNGSQFFITTVKTTWLDGRHVVFGKVIEG-MDVVYKVEAVGSGGGATSKKVVIADSGEL 200          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A8J282_CHLRE (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8J282_CHLRE)

HSP 1 Score: 234 bits (597), Expect = 6.300e-75
Identity = 122/208 (58.65%), Postives = 150/208 (72.12%), Query Frame = 1
Query:   16 KSLAVAAVGLFAAASAAGDVTEVGA---TATNSAVTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            ++LA+A +GL   A+      + G+    A ++ +TH+V+FDV I G+P  RI +GL+GN VP TV+NFR LCTGE GTG    KPLH+KNSIFHRIIPQFM+QGGDFT   GTGGESIYG +F DE F   L H  PGV+SMANAG +TNGSQFFI TV T WLD +HV+FG+V E  MDVVY +E +G+  G PS +V I DSGEL
Sbjct:   17 RALALALLGLVVLAATGVHAAKKGSKKKVAADTTITHKVYFDVEIDGKPEGRIVVGLYGNTVPKTVENFRALCTGEKGTG-TSGKPLHFKNSIFHRIIPQFMIQGGDFTRGDGTGGESIYGSRFPDENFA--LKHTGPGVLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVVEG-MDVVYKVEAVGTSSGKPSKKVTIADSGEL 220          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: C1EA22_MICCC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EA22_MICCC)

HSP 1 Score: 233 bits (593), Expect = 1.160e-74
Identity = 117/174 (67.24%), Postives = 135/174 (77.59%), Query Frame = 1
Query:  109 VTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            +T++V+FDVSIGGQP+ RITMGL+G AVP TV+NFR LCTGE G G    KPLHYK SIFHRIIPQFMLQGGDFT   G GGESIYG KF DE+F   + H+  G +SMANAG NTNGSQFFI T+ T WLD +HV+FG+V E  MDVVY +E +GS+ G PS  V ITDSGEL
Sbjct:   27 ITNKVYFDVSIGGQPAGRITMGLYGTAVPKTVENFRALCTGEKGVGN-RGKPLHYKGSIFHRIIPQFMLQGGDFTDGNGRGGESIYGEKFADESFA--IKHSGAGDLSMANAGPNTNGSQFFITTIKTAWLDGRHVVFGKVLEG-MDVVYKVEAVGSQSGKPSKEVVITDSGEL 196          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: C1MI65_MICPC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MI65_MICPC)

HSP 1 Score: 233 bits (593), Expect = 1.320e-74
Identity = 121/186 (65.05%), Postives = 140/186 (75.27%), Query Frame = 1
Query:   85 GATATNSA--VTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGELLA 636
            GATA++++  VT +VFFDVSIGG P+ RITMGL+G+ VP T +NFR L TGE GTGK   KPLHYK S FHR+IP FM+QGGDFT   G GGESIYG KF DE F   L H  PG +SMAN+G NTNGSQFFICT+ T WLD +HV+FG+V E  MDVVY IE +GS  GTPS  V ITDSG+L A
Sbjct:   21 GATASDASPKVTDKVFFDVSIGGIPAGRITMGLYGDVVPKTAENFRALATGEKGTGK-RGKPLHYKGSTFHRVIPNFMIQGGDFTDGNGRGGESIYGAKFADENF--SLQHAGPGDLSMANSGPNTNGSQFFICTIKTSWLDGRHVVFGKVLEG-MDVVYKIEAVGSSSGTPSKEVTITDSGQLPA 202          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A0A835Y0M8_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0M8_9CHLO)

HSP 1 Score: 233 bits (594), Expect = 1.340e-74
Identity = 126/205 (61.46%), Postives = 147/205 (71.71%), Query Frame = 1
Query:   22 LAVAAVGLFAAASA--AGDVTEVGATATNSAVTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            LA+AA+ L AA+S   A   ++    A ++ VTH+V+FD+ I G+P  RI MGL+GN VP TVDNFR LCTGE G G    KPL YK SIFHRIIPQFMLQGGDFT   GTGGESIYG +F DE F   L H  PGV+SMANAG +TNGSQFFI TV T WLD +HV+FG+VE+  MD+VY IE  GS  G PS  V+I DSGEL
Sbjct:   11 LAIAALVLVAASSGVHAAKKSKKSKIAADTTVTHKVYFDIEIDGKPEGRIVMGLYGNTVPKTVDNFRALCTGEKGQG-TSGKPLTYKGSIFHRIIPQFMLQGGDFTRGDGTGGESIYGSRFPDENFA--LKHTGPGVLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVEDG-MDLVYKIESYGSSSGKPSKTVKIVDSGEL 211          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A0A7S1FIF5_NOCSC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FIF5_NOCSC)

HSP 1 Score: 231 bits (590), Expect = 2.540e-74
Identity = 115/174 (66.09%), Postives = 133/174 (76.44%), Query Frame = 1
Query:  109 VTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            VTH+VFFD+++ G+ + RI MGL+G+ VP TV+NFR LCTGE G GK   KPLHYK S FHR+IP FMLQGGDFTH TGTGGESIYG KF+DE F   L H  PG +SMANAGKNTNGSQFFI TV T WLD KHV+FG+V E  MD+V  +E +GS+ G  S  VEI DSGEL
Sbjct:   21 VTHKVFFDITLDGEDAGRIVMGLYGDVVPKTVENFRALCTGEKGVGKS-GKPLHYKGSKFHRVIPNFMLQGGDFTHGTGTGGESIYGSKFNDENF--QLKHTAPGKLSMANAGKNTNGSQFFITTVTTSWLDGKHVVFGEVLEG-MDIVQKVEAVGSQSGKTSKLVEIKDSGEL 190          
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Match: A0A0D2MNZ0_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MNZ0_9CHLO)

HSP 1 Score: 232 bits (591), Expect = 2.840e-74
Identity = 116/174 (66.67%), Postives = 133/174 (76.44%), Query Frame = 1
Query:  109 VTHRVFFDVSIGGQPSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRIIPQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGKNTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSARVEITDSGEL 630
            VTH+VFFD+ I G+P+ RI MGLFG+ VP TV+NFR LCTGE GTGK   KPLH+K S+FHRIIPQFM+QGGDFT   GTGGESIYG KF DE F   L H  PG +SMANAG NTNGSQFFI TV T WLD +HV+FG+V E  MDVV  +E +GS  GTPS +V I DSGE+
Sbjct:   31 VTHKVFFDIEIDGKPAGRIVMGLFGDIVPKTVENFRALCTGEKGTGKS-GKPLHFKGSVFHRIIPQFMIQGGDFTRGDGTGGESIYGEKFADENFK--LKHKAPGYLSMANAGPNTNGSQFFITTVKTAWLDGRHVVFGKVIEG-MDVVLKVEAIGSGSGTPSKKVTIADSGEI 200          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8710.16850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6P5_ECTSI3.110e-10177.17Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835ZLK1_9STRA4.040e-8571.84Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A2K1IH38_PHYPA5.250e-7761.43Peptidyl-prolyl cis-trans isomerase n=2 Tax=Physco... [more]
A0A7J7Q6Q0_9CHLO3.490e-7567.05Peptidyl-prolyl cis-trans isomerase n=1 Tax=Scened... [more]
A8J282_CHLRE6.300e-7558.65Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chlamy... [more]
C1EA22_MICCC1.160e-7467.24Peptidyl-prolyl cis-trans isomerase n=1 Tax=Microm... [more]
C1MI65_MICPC1.320e-7465.05Peptidyl-prolyl cis-trans isomerase n=1 Tax=Microm... [more]
A0A835Y0M8_9CHLO1.340e-7461.46Peptidyl-prolyl cis-trans isomerase n=1 Tax=Edapho... [more]
A0A7S1FIF5_NOCSC2.540e-7466.09Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctil... [more]
A0A0D2MNZ0_9CHLO2.840e-7466.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8710contigS-dermatodea_contig8710:5169..8608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.8
Seed ortholog evalue1.3e-79
Seed eggNOG ortholog2880.D7G6P5
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-26_000140.1
Exons6
Model size639
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8710.16850.1prot_S-dermatodea_contig8710.16850.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8710 5169..8608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.1241858-CDS-S-dermatodea_contig8710:5168..52761622925361.1241858-CDS-S-dermatodea_contig8710:5168..5276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 5169..5276 +
1694079881.23609-CDS-S-dermatodea_contig8710:5168..52761694079881.23609-CDS-S-dermatodea_contig8710:5168..5276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 5169..5276 +
1622925361.139527-CDS-S-dermatodea_contig8710:5617..57241622925361.139527-CDS-S-dermatodea_contig8710:5617..5724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 5618..5724 +
1694079881.2511084-CDS-S-dermatodea_contig8710:5617..57241694079881.2511084-CDS-S-dermatodea_contig8710:5617..5724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 5618..5724 +
1622925361.1553915-CDS-S-dermatodea_contig8710:6156..62471622925361.1553915-CDS-S-dermatodea_contig8710:6156..6247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 6157..6247 +
1694079881.26644-CDS-S-dermatodea_contig8710:6156..62471694079881.26644-CDS-S-dermatodea_contig8710:6156..6247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 6157..6247 +
1622925361.1705368-CDS-S-dermatodea_contig8710:6770..68601622925361.1705368-CDS-S-dermatodea_contig8710:6770..6860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 6771..6860 +
1694079881.2767868-CDS-S-dermatodea_contig8710:6770..68601694079881.2767868-CDS-S-dermatodea_contig8710:6770..6860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 6771..6860 +
1622925361.1885421-CDS-S-dermatodea_contig8710:7425..75571622925361.1885421-CDS-S-dermatodea_contig8710:7425..7557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 7426..7557 +
1694079881.2866857-CDS-S-dermatodea_contig8710:7425..75571694079881.2866857-CDS-S-dermatodea_contig8710:7425..7557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 7426..7557 +
1622925361.2006435-CDS-S-dermatodea_contig8710:8497..86081622925361.2006435-CDS-S-dermatodea_contig8710:8497..8608Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 8498..8608 +
1694079881.2978597-CDS-S-dermatodea_contig8710:8497..86081694079881.2978597-CDS-S-dermatodea_contig8710:8497..8608Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8710 8498..8608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8710.16850.1

>prot_S-dermatodea_contig8710.16850.1 ID=prot_S-dermatodea_contig8710.16850.1|Name=mRNA_S-dermatodea_contig8710.16850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=213bp
MARILKSLAVAAVGLFAAASAAGDVTEVGATATNSAVTHRVFFDVSIGGQ
PSKRITMGLFGNAVPLTVDNFRKLCTGEAGTGKVYKKPLHYKNSIFHRII
PQFMLQGGDFTHETGTGGESIYGGKFDDEAFLPDLMHNKPGVISMANAGK
NTNGSQFFICTVPTPWLDNKHVIFGQVEESSMDVVYAIEKMGSRGGTPSA
RVEITDSGELLA*
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mRNA from alignment at S-dermatodea_contig8710:5169..8608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8710.16850.1 ID=mRNA_S-dermatodea_contig8710.16850.1|Name=mRNA_S-dermatodea_contig8710.16850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3440bp|location=Sequence derived from alignment at S-dermatodea_contig8710:5169..8608+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGAGGATCTTGAAGAGCTTGGCGGTGGCGGCCGTGGGCCTGTTCGC AGCTGCGAGCGCCGCCGGTGACGTCACGGAGGTGGGTGCAACGGCGACGA ATTCCGCGGTATGTTGTTTTCCTCCGAATGCGGACGGAGCAACCGCCTTG TTTTGACAGCTTCGCGAGTCTCTCTCTTGCCTACATAGCAACATAAGGAG GAAACGCAGGCATCGGTCCGAATCGTGGCATGCTGCTGCTGCCGGCCTGC TGCTTGTTGCCGTTGGTGGTTCATGACCAGTTTTTTCCCGCAGAATAGGG AACATCGCGTTTGTAGCAGTATACCGCATGCGTGGTGCCCAGAACAGATG GAGAGAAGGCAGGAATCCGATGTGCCAGCGCCCCTCCGCGCAGCCTTGAA CTGATGAGCACACTCGCGACACGTACGTTGTTCAAACGATCGGATGCAGG TGACCCACAGGGTGTTCTTTGACGTCAGCATCGGCGGCCAGCCGTCTAAA CGGATCACCATGGGCTTGTTCGGCAACGCTGTCCCCTTGACGGTGGACAA CTTCAGGTCGGGAAAGGCATTGACTCGTTCCAGAGCAACGATTATTGCGG TCCCCAAGTCGCCCGCACCGAGCATGTTTTTTGCATACCTGAGCAATGTA GCATCCACTTAGAGCGAGGGCTGTCTCTTGGCATGTTCGTACAGCGGCAC ATTGCACCGGACGGGTGGGTGTAGAGCATTACCATGGTAGGTTTTTTGTT GTTGTGTTAATACTCATGTATCTCGAAAAGAGAGGTGCAGTACGTCAGTT ACACCTCATTCAATGCCGACGTTCGGCACGTGGTATGCAGAGCTGTGCAC GCCCGGCAGCTAATCTCCACTTGGAATTAGCTGATGCCAGGGGTGACCAC GTGTGCGTGGGTTCGACAGCAATCCTTACCGACCATACTTTTTCTTGTTA TTTTCGCGTCAATCGAACATTCTTTGGCATGTGCACAGGAAACTGTGCAC GGGCGAGGCGGGCACCGGGAAGGTGTACAAGAAGCCTCTGCACTACAAAA ACTCGATCTTCCACCGCATCATCCCGCAGGTATGCATACGTACAAGCAAT CATCACTCTCGCCCTCATCCCTTTACCCTTTAATGTGCCGATTCTACCCG TCCATGCGTCTCGCACACCCCTCCAACCCAACGGGTATCTCACGGTGTAT TTCGTCTGGTGGCCACCATTCGTGTTGTCCGATGCATTGTTTGAAAACGC CTTTAACGTCTAGGCTTGGCTATTCCAAGCCCGAACACGTTCGACATTCC CCTGCGGGAAAAAATCATGGGTCACTGATAGCGGGGGGAAACAAAAAAAA ATCATCGGCACACACGCAGCAACCTAGAAGCGATTTGAGGGTTCGTGCGC ACGTCGACGGCGCAAAACTCCCGTGCCATGTACCCTCTCCAGGGTTGATT TCGTGATCCCTTTCCTCGATGTTGTCAAGCCGCCATTTTACACAATATTG TGCCTAGGCGATTCGCGCGTTGTCTGATGGCGGCCCTTGTGTGTCCGTGT GTGCGGGTGCCGTCGTTTTGCGGTCATTGTGCTGCTTTTGTCCGGCACCC AGTTCATGCTCCAAGGTGGCGACTTCACACACGAAACCGGCACCGGCGGC GAGTCCATCTACGGCGGGAAGTTTGACGACGAGGCATTCCTTGTGAGTGG GTCCCTTACCGTGGCGAGGCGTTTCCGCGATAGTTATACGCATGGCGGTA TCGGCTGACGCGACCATGGGCCTTGACCTGTGACCACGCAGACAAGAGAG ACGCTGTCGGTGTCGGGATGATTAGGGGAGCGTAAGGGGGTTAGCTCCGT AACATGAGCCCCCTCCCTGGTGTTTAAAGCCCTGCGGCACCGTTTCGTCG GTTGCCCCAATGACCCAGGTTTCCAGCGAGCTGTGGCCTCGGCGTGCTTC TTAGGGGTATCCGCACTGCGGCAGGAGCGGTCGGCACTTGCCTCGTGGCC GGTCGGTAGGGTGTGCCTCCCTGCGCCCCTTGGCTTGGCTTCGCCGTGAT TGTTGCACCGGCAAGTTGAGCAGCCTCACGATACAACGGCAAACGAGTTG TTTTTGTACCCGCCGATCGCTTGTGCAGCCGGCGTTGCGTAAGCAAGCCT GACACGCTGTCTATAGCCAACGCGGCAGAAAAGGTGCGCGGTTACGTCTT GATTTCCTCTGCTGAAACCAACCTCCGGCATTCCCGTCTTTGCTCACGCC CACGCAGCCTGACCTGATGCACAACAAGCCCGGCGTTATCTCGATGGCCA ACGCCGGCAAGAACACGAACGGCTCCCAGTTCTTCATTTGCACCGTGCCC ACCCCGTGGTTGGATAACAAGCACGTCATCTTCGGACAGGTGATGGCGCG ATCTTCTTGGGTTGGCTTAGCTCGAGTATAGGACTCTGTTGACAGTTTTA TTGCGGCCATGCATCCAACCGAGTCCTTTTGGGACCGGTCCTGAACTTAA ACGGTATCAGAGGTCCGTGACCCCTACACCCGAAGACAAGCCATGTCCAA GGCATATGTCTGTCTGAGAGCGTGGCACAGCTCCGTGATGCCTCGCCCTT GCTTCCCGCGACAGCGCCAGGAACGACAGGGCCTGATCGAGGCGCTCTGG TGCGCTGCTCCACCCGTTTGACACGGTGGTTCCCGCGGCATCCGCCAGCG TCCTCTGACTCACCGACTCCCCAGTACCATCTCCACCGGTGGTGGACGTG TTCCCCAGCCCTTCAAATGGCCCTCGCCTTCACTAGCGGTGGCGCCGCAG GGACCCGCCGCATGGTCCTGGACGGGGGGCGACCGGGACTTGGTGATATA AGTGGGCGGGTTCAACCCCCTTGCTTGCAACCCGTCCAGAGGTGTAAACG AACTCCCGGTCGCCCCCGTCCAGGATTTGCGGCGGGACCCTGCGGTGCCA CCGCGCCGATGACAGTGATTGACCGAAAGGCTGAAGGAGACGCTCACCAC TGGTGGAGATTGCGGTGTGGAGTCGGAGCGAAACTACCCAGAGGGCGCTG ATGGGGGCTGCGAGAACCGCTGTGTACAGTGGGTGGAGCGGCGCTCGAGA GCGTCTGGGCCACGTCCGGGATTTCCGTGCATCACCTCCCGGCCGCCCTT TCATTTATTTATGACGTCGCGCGTTCTCCTTTTGCCACGTGTGAAAACTG GCCCGGCCTCTTCTCCGGATGCCGTCAATCGTGAAAACGCCTGCCCTGCA ACCGGCTAGCTAATGTAGCGCCCCACGTGGCCGATTTCGCCCCTCGCTGT TCCTATTCGCCGATGTTTTATTTGTTTAGGTGGAAGAGAGCAGCATGGAC GTTGTCTACGCCATCGAAAAGATGGGCAGCCGAGGCGGCACCCCTAGCGC CAGGGTGGAGATCACTGACTCCGGCGAGCTACTTGCATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8710:5169..8608+

>mRNA_S-dermatodea_contig8710.16850.1 ID=mRNA_S-dermatodea_contig8710.16850.1|Name=mRNA_S-dermatodea_contig8710.16850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at S-dermatodea_contig8710:5169..8608+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGAGGATCTTGAAGAGCTTGGCGGTGGCGGCCGTGGGCCTGTTCGC
AGCTGCGAGCGCCGCCGGTGACGTCACGGAGGTGGGTGCAACGGCGACGA
ATTCCGCGATGGCGAGGATCTTGAAGAGCTTGGCGGTGGCGGCCGTGGGC
CTGTTCGCAGCTGCGAGCGCCGCCGGTGACGTCACGGAGGTGGGTGCAAC
GGCGACGAATTCCGCGGTGACCCACAGGGTGTTCTTTGACGTCAGCATCG
GCGGCCAGCCGTCTAAACGGATCACCATGGGCTTGTTCGGCAACGCTGTC
CCCTTGACGGTGGACAACTTCAGGTGACCCACAGGGTGTTCTTTGACGTC
AGCATCGGCGGCCAGCCGTCTAAACGGATCACCATGGGCTTGTTCGGCAA
CGCTGTCCCCTTGACGGTGGACAACTTCAGGAAACTGTGCACGGGCGAGG
CGGGCACCGGGAAGGTGTACAAGAAGCCTCTGCACTACAAAAACTCGATC
TTCCACCGCATCATCCCGCAGGAAACTGTGCACGGGCGAGGCGGGCACCG
GGAAGGTGTACAAGAAGCCTCTGCACTACAAAAACTCGATCTTCCACCGC
ATCATCCCGCAGTTCATGCTCCAAGGTGGCGACTTCACACACGAAACCGG
CACCGGCGGCGAGTCCATCTACGGCGGGAAGTTTGACGACGAGGCATTCC
TTTTCATGCTCCAAGGTGGCGACTTCACACACGAAACCGGCACCGGCGGC
GAGTCCATCTACGGCGGGAAGTTTGACGACGAGGCATTCCTTCCTGACCT
GATGCACAACAAGCCCGGCGTTATCTCGATGGCCAACGCCGGCAAGAACA
CGAACGGCTCCCAGTTCTTCATTTGCACCGTGCCCACCCCGTGGTTGGAT
AACAAGCACGTCATCTTCGGACAGCCTGACCTGATGCACAACAAGCCCGG
CGTTATCTCGATGGCCAACGCCGGCAAGAACACGAACGGCTCCCAGTTCT
TCATTTGCACCGTGCCCACCCCGTGGTTGGATAACAAGCACGTCATCTTC
GGACAGGTGGAAGAGAGCAGCATGGACGTTGTCTACGCCATCGAAAAGAT
GGGCAGCCGAGGCGGCACCCCTAGCGCCAGGGTGGAGATCACTGACTCCG
GCGAGCTACTTGCATAAGTGGAAGAGAGCAGCATGGACGTTGTCTACGCC
ATCGAAAAGATGGGCAGCCGAGGCGGCACCCCTAGCGCCAGGGTGGAGAT
CACTGACTCCGGCGAGCTACTTGCATAA
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