mRNA_S-dermatodea_contig8694.16835.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.040e-26 Identity = 98/304 (32.24%), Postives = 130/304 (42.76%), Query Frame = 1
Query: 34 DTPLHLAAQGGHTQSISALLTSG---------------------------------ANRDLRN-GHNLTPLSRAFHGNHVQAAEKLLLMARAGRSDANYLDGLEYY-WALVERAAENRQLDMLRMLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEFSV--DDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQ----ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
+TPLHLAA GH IS LL AN LR G +PL A HG H + LL D++ LD + WA + AA V DG +++N ++ L+ +GAD + D FT L A + + ALL GG+N++A+ D T LH AC+ + V V LLLRWGA+E +T++ G+T DV+ D+ AD+ RIRRML A +RSWRRR WLVL RSCP
Sbjct: 17 ETPLHLAASKGHALCISELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACANYGLRTEGTRCSPLEIAAHGGHADVLKALL------DKDSSQLDDTDGEGWAALHYAA----------------------------------VVDG-PVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCP 279
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.790e-26 Identity = 100/306 (32.68%), Postives = 142/306 (46.41%), Query Frame = 1
Query: 1 GARPDEIDISGDTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTP------------LSRAFHG--NHVQAAEKLLLMARAGRSDANYLDGLEYYWALVERAAENRQLDMLRMLISW---------GGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEF--SVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQADDD-------RIRRMLARALTNRSWRRRSWLVLCRSCP 822
GA P+ D +PLHLAA GH + + LL + A + +S G +H++A ++LL + ANY + +E AA Q D+++ L+ GG I P +++N ++ L+ +GAD + D T+L A ++ + I ALL GGAN+NA+ D T LH AC RS V V LLLRWGA++ +T++ G+T VV + + D DD+ RIRRMLAR RSWRRR WLVL RSCP
Sbjct: 116 GADPNVRDRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTASQXXXXXXXXXXXXALCISELLLGANSHLEAVQELLA------AGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGP----------VRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRA----LQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCP 401
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 114 bits (285), Expect = 2.860e-25 Identity = 68/147 (46.26%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 400 NNASIIKYLIESGADTEFSVDDGF---TALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGS-GPGIINSD--QADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
+N ++++ L+E+G F T L A + + LALL GGAN NA T LH AC S+V AV LLLRWGA+ET ++D+G DV+G G +N + +AD RIRRMLARA +RSWRRR WLVL RSCP
Sbjct: 291 DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCP 437
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 110 bits (275), Expect = 7.020e-24 Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 394 IQNNASIIKYLIESGADTEF--SVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQADDD-------RIRRMLARALTNRSWRRRSWLVLCRSCP 822
+++ ++ L+ +GAD + D T L A ++ + I ALL GGAN+NA+T D T LH AC R V LLLRWGA+E + ++DG T DVV G++ + DD+ RI RMLARA +RSWRRR WLVL RSCP
Sbjct: 293 VRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVV----GVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCP 440
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE) HSP 1 Score: 104 bits (259), Expect = 6.000e-23 Identity = 68/161 (42.24%), Postives = 86/161 (53.42%), Query Frame = 1
Query: 394 IQNNASIIKYLIESGADTEF-SVDDG--FTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRT---------------AMDVVGSGPGIINSDQADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
+ +N ++ L+E+GAD + + DG T L A ++ + I ALL GGANVNA+ D T LH AC RS V V LL WGA+E +T DG T D G G + +AD RIR+MLARA +RSW RR WLVL RSCP
Sbjct: 34 VLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCP 194
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 107 bits (267), Expect = 9.970e-23 Identity = 67/149 (44.97%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 397 QNNASIIKYLIESGADTEF-SVDDGFTALLSAASKPGSCPRN--ILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSD----QADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
++ ++ L+ +GAD + DD + G P I ALL GGA+VN + D T LH AC S V AV LLLRWGA+E +T D T D++G+ G + SD +AD RI +MLARA +RSWRRRSWLVL RSCP
Sbjct: 292 RDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTS-GDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCP 439
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI) HSP 1 Score: 100 bits (250), Expect = 6.520e-21 Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 442 DTEFSVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQ---ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
D E + D T L A + + I ALL GGA+++ + D T LH AC+RS V V LLLR GA+E +T+++G D+VG+ P D+ D+ RIRRMLARA +RSWRRR LVL RSCP
Sbjct: 178 DAEATGSDCSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCP 307
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5JB39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB39_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.510e-17 Identity = 82/272 (30.15%), Postives = 112/272 (41.18%), Query Frame = 1
Query: 34 DTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTPLSRAFHGNHVQAAEKLLLMARAGRS-DANYLDGLEYYWALVERAAENRQLDMLRMLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEFS-----VDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQ---ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
+TP +AA GHT IS LL GA+RD+ +G T +Y L+ + V+ A +NR L + P + +N ++ L+E+GAD DD FT L A S+P + I + T LH AC D+ V LLLRWGA+E + + T DV+G +D+ AD+ RIR +LARA +RSW RR WLVL RSCP
Sbjct: 116 ETPRQIAAAMGHTLCISELLMGGADRDVDDGKGETXXXXXXXXXXXXXXXXXXXXXXXXXXLTMSYRSPLQAAASRVD-ATDNRGWTALHCAAYFD-------------RP----------VHDNGDAVRALLEAGADVNVKNDAHVSDDIFTPLHVAVSRPMASICTIXXXXXXXXXXXXXXXCNQTPLHVACMWGDLSGVELLLRWGADEMLKKNRVDTPADVIGVWGDEDRNDEEIEADNQRIRPVLARAAADRSWHRRDWLVLSRSCP 363
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.220e-16 Identity = 84/270 (31.11%), Postives = 111/270 (41.11%), Query Frame = 1
Query: 28 SGDTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTPLSRAFHGNHVQAAEKLLLMARAGRSDANYLDGLEYYWALVERAAENRQLDMLRMLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEFSVDDGFTA--LLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGS---GPGIINSDQADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
S TPLHLAA G +S LL GAN NH++A ++LL +G + ++ AA D+L L+ N DG + +N ++ L+ GAD D A L A + + I D LH ACR S V V LLLRWGA+E +T+ G+T DV+ + G +ADD RI RM+A +RSWRRR WLVL RSCP
Sbjct: 168 SQSTPLHLAASEGRALCLSELLL-GAN------------------NHLEAVQELLAAGANCGLRCMLTNGSH---SSLDMAAGRGHADVLTALLDKD-------------NIFFAMSVDG-PVHDNGDAVRALLGVGADVNAKTTDSICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQGDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCP 401
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 2.890e-15 Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 553 NAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGS---------GPGIINSDQ--ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
NAQ + T LH+AC +S+ AV LLLRWGA++T+ +G TA D VG+ G I+ D+ AD R R +LA A +R WRRR WLVLCRS P
Sbjct: 398 NAQAENTWTPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRSYP 498 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8694.16835.1 >prot_S-dermatodea_contig8694.16835.1 ID=prot_S-dermatodea_contig8694.16835.1|Name=mRNA_S-dermatodea_contig8694.16835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=274bp GARPDEIDISGDTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTPLSRback to top mRNA from alignment at S-dermatodea_contig8694:886..1708+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8694.16835.1 ID=mRNA_S-dermatodea_contig8694.16835.1|Name=mRNA_S-dermatodea_contig8694.16835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=823bp|location=Sequence derived from alignment at S-dermatodea_contig8694:886..1708+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8694:886..1708+ >mRNA_S-dermatodea_contig8694.16835.1 ID=mRNA_S-dermatodea_contig8694.16835.1|Name=mRNA_S-dermatodea_contig8694.16835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at S-dermatodea_contig8694:886..1708+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |