mRNA_S-dermatodea_contig8694.16835.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8694.16835.1
Unique NamemRNA_S-dermatodea_contig8694.16835.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.040e-26
Identity = 98/304 (32.24%), Postives = 130/304 (42.76%), Query Frame = 1
Query:   34 DTPLHLAAQGGHTQSISALLTSG---------------------------------ANRDLRN-GHNLTPLSRAFHGNHVQAAEKLLLMARAGRSDANYLDGLEYY-WALVERAAENRQLDMLRMLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEFSV--DDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQ----ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            +TPLHLAA  GH   IS LL                                    AN  LR  G   +PL  A HG H    + LL        D++ LD  +   WA +  AA                                  V DG  +++N   ++ L+ +GAD   +   D  FT L  A +        + ALL GG+N++A+   D T LH AC+ + V  V LLLRWGA+E +T++ G+T  DV+         D+    AD+ RIRRML  A  +RSWRRR WLVL RSCP
Sbjct:   17 ETPLHLAASKGHALCISELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACANYGLRTEGTRCSPLEIAAHGGHADVLKALL------DKDSSQLDDTDGEGWAALHYAA----------------------------------VVDG-PVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCP 279          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.790e-26
Identity = 100/306 (32.68%), Postives = 142/306 (46.41%), Query Frame = 1
Query:    1 GARPDEIDISGDTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTP------------LSRAFHG--NHVQAAEKLLLMARAGRSDANYLDGLEYYWALVERAAENRQLDMLRMLISW---------GGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEF--SVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQADDD-------RIRRMLARALTNRSWRRRSWLVLCRSCP 822
            GA P+  D    +PLHLAA  GH + +  LL + A    +                   +S    G  +H++A ++LL       + ANY        + +E AA   Q D+++ L+           GG          I  P          +++N   ++ L+ +GAD     + D   T+L  A ++  +    I ALL GGAN+NA+   D T LH AC RS  V V LLLRWGA++ +T++ G+T   VV +    +  D  DD+       RIRRMLAR    RSWRRR WLVL RSCP
Sbjct:  116 GADPNVRDRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTASQXXXXXXXXXXXXALCISELLLGANSHLEAVQELLA------AGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGP----------VRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRA----LQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCP 401          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.860e-25
Identity = 68/147 (46.26%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  400 NNASIIKYLIESGADTEFSVDDGF---TALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGS-GPGIINSD--QADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            +N ++++ L+E+G          F   T L  A  +  +     LALL GGAN NA      T LH AC  S+V AV LLLRWGA+ET ++D+G    DV+G    G +N +  +AD  RIRRMLARA  +RSWRRR WLVL RSCP
Sbjct:  291 DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCP 437          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.020e-24
Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  394 IQNNASIIKYLIESGADTEF--SVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQADDD-------RIRRMLARALTNRSWRRRSWLVLCRSCP 822
            +++    ++ L+ +GAD     + D   T L  A ++  +    I ALL GGAN+NA+T  D T LH AC R     V LLLRWGA+E + ++DG T  DVV    G++  +  DD+       RI RMLARA  +RSWRRR WLVL RSCP
Sbjct:  293 VRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVV----GVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCP 440          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.000e-23
Identity = 68/161 (42.24%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  394 IQNNASIIKYLIESGADTEF-SVDDG--FTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRT---------------AMDVVGSGPGIINSDQADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            + +N   ++ L+E+GAD +  +  DG   T L  A ++  +    I ALL GGANVNA+   D T LH AC RS V  V  LL WGA+E +T  DG T                 D  G   G   + +AD  RIR+MLARA  +RSW RR WLVL RSCP
Sbjct:   34 VLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCP 194          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 9.970e-23
Identity = 67/149 (44.97%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  397 QNNASIIKYLIESGADTEF-SVDDGFTALLSAASKPGSCPRN--ILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSD----QADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            ++    ++ L+ +GAD    + DD         +  G  P    I ALL GGA+VN +   D T LH AC  S V AV LLLRWGA+E +T D   T  D++G+  G + SD    +AD  RI +MLARA  +RSWRRRSWLVL RSCP
Sbjct:  292 RDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTS-GDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCP 439          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.520e-21
Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query:  442 DTEFSVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQ---ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            D E +  D  T L  A  +  +    I ALL GGA+++   + D T LH AC+RS V  V LLLR GA+E +T+++G    D+VG+ P     D+    D+ RIRRMLARA  +RSWRRR  LVL RSCP
Sbjct:  178 DAEATGSDCSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCP 307          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5JB39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB39_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.510e-17
Identity = 82/272 (30.15%), Postives = 112/272 (41.18%), Query Frame = 1
Query:   34 DTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTPLSRAFHGNHVQAAEKLLLMARAGRS-DANYLDGLEYYWALVERAAENRQLDMLRMLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEFS-----VDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQ---ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            +TP  +AA  GHT  IS LL  GA+RD+ +G   T                             +Y   L+   + V+ A +NR    L     +               P          + +N   ++ L+E+GAD          DD FT L  A S+P +    I                + T LH AC   D+  V LLLRWGA+E +  +   T  DV+G       +D+   AD+ RIR +LARA  +RSW RR WLVL RSCP
Sbjct:  116 ETPRQIAAAMGHTLCISELLMGGADRDVDDGKGETXXXXXXXXXXXXXXXXXXXXXXXXXXLTMSYRSPLQAAASRVD-ATDNRGWTALHCAAYFD-------------RP----------VHDNGDAVRALLEAGADVNVKNDAHVSDDIFTPLHVAVSRPMASICTIXXXXXXXXXXXXXXXCNQTPLHVACMWGDLSGVELLLRWGADEMLKKNRVDTPADVIGVWGDEDRNDEEIEADNQRIRPVLARAAADRSWHRRDWLVLSRSCP 363          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.220e-16
Identity = 84/270 (31.11%), Postives = 111/270 (41.11%), Query Frame = 1
Query:   28 SGDTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTPLSRAFHGNHVQAAEKLLLMARAGRSDANYLDGLEYYWALVERAAENRQLDMLRMLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTEFSVDDGFTA--LLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGS---GPGIINSDQADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            S  TPLHLAA  G    +S LL  GAN                  NH++A ++LL             +G     + ++ AA     D+L  L+                N       DG  + +N   ++ L+  GAD      D   A  L  A  +  +    I                D   LH ACR S V  V LLLRWGA+E +T+  G+T  DV+ +   G       +ADD RI RM+A    +RSWRRR WLVL RSCP
Sbjct:  168 SQSTPLHLAASEGRALCLSELLL-GAN------------------NHLEAVQELLAAGANCGLRCMLTNGSH---SSLDMAAGRGHADVLTALLDKD-------------NIFFAMSVDG-PVHDNGDAVRALLGVGADVNAKTTDSICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQGDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCP 401          
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.890e-15
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  553 NAQTQADMTALHFACRRSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGS---------GPGIINSDQ--ADDDRIRRMLARALTNRSWRRRSWLVLCRSCP 822
            NAQ +   T LH+AC +S+  AV LLLRWGA++T+   +G TA D VG+           G I+ D+  AD  R R +LA A  +R WRRR WLVLCRS P
Sbjct:  398 NAQAENTWTPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRSYP 498          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8694.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LQI9_ECTSI1.040e-2632.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE1.790e-2632.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI2.860e-2546.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQN0_ECTSI7.020e-2443.42Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5K6K9_9PHAE6.000e-2342.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI9.970e-2344.97MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LTL5_ECTSI6.520e-2146.15MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB39_9PHAE5.510e-1730.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7E1_9PHAE2.220e-1631.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G692_ECTSI2.890e-1547.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8694contigS-dermatodea_contig8694:886..1708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D8LB27
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size823
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.5457253-CDS-S-dermatodea_contig8694:885..17071622925359.5457253-CDS-S-dermatodea_contig8694:885..1707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8694 886..1707 +
1694079880.1295738-CDS-S-dermatodea_contig8694:885..17071694079880.1295738-CDS-S-dermatodea_contig8694:885..1707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8694 886..1707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8694.16835.1prot_S-dermatodea_contig8694.16835.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8694 886..1707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8694.16835.1

>prot_S-dermatodea_contig8694.16835.1 ID=prot_S-dermatodea_contig8694.16835.1|Name=mRNA_S-dermatodea_contig8694.16835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=274bp
GARPDEIDISGDTPLHLAAQGGHTQSISALLTSGANRDLRNGHNLTPLSR
AFHGNHVQAAEKLLLMARAGRSDANYLDGLEYYWALVERAAENRQLDMLR
MLISWGGNLPERQLKLLILNPLLGRVADGFCIQNNASIIKYLIESGADTE
FSVDDGFTALLSAASKPGSCPRNILALLRGGANVNAQTQADMTALHFACR
RSDVVAVRLLLRWGAEETVTSDDGRTAMDVVGSGPGIINSDQADDDRIRR
MLARALTNRSWRRRSWLVLCRSCP
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mRNA from alignment at S-dermatodea_contig8694:886..1708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8694.16835.1 ID=mRNA_S-dermatodea_contig8694.16835.1|Name=mRNA_S-dermatodea_contig8694.16835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=823bp|location=Sequence derived from alignment at S-dermatodea_contig8694:886..1708+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCACGGCCAGACGAGATAGATATATCAGGAGACACCCCTCTCCACCT AGCGGCCCAGGGAGGCCACACGCAGAGCATATCGGCGCTCTTGACGAGTG GCGCGAACAGAGACTTGCGTAACGGCCACAACCTAACGCCTCTCTCCCGG GCTTTCCATGGAAACCATGTTCAGGCGGCGGAGAAGCTTCTTCTGATGGC CCGGGCAGGCCGGTCAGACGCGAACTACCTAGATGGTTTAGAATACTACT GGGCGCTGGTCGAGAGGGCCGCCGAGAACCGCCAGCTGGACATGCTCCGG ATGCTTATCTCGTGGGGCGGCAACCTACCGGAACGACAACTGAAGCTACT TATACTCAACCCGCTGTTGGGAAGAGTGGCCGACGGTTTCTGTATCCAAA ATAACGCGTCCATAATCAAGTATCTCATCGAGAGCGGGGCTGACACCGAA TTCAGCGTGGACGATGGATTTACCGCTCTCCTTAGTGCCGCCAGTAAGCC TGGTTCGTGCCCTAGAAACATTCTGGCCCTGTTGCGGGGAGGGGCAAACG TGAATGCCCAGACCCAGGCCGACATGACCGCGCTACACTTCGCGTGCAGG AGATCGGACGTTGTTGCCGTTAGGCTTCTCCTGAGGTGGGGAGCCGAAGA AACGGTGACCTCGGACGATGGCCGCACAGCGATGGACGTGGTCGGATCAG GACCAGGCATCATCAACAGCGACCAAGCTGACGATGATCGGATACGGCGC ATGTTGGCTCGAGCTCTGACCAATCGATCGTGGCGTCGCCGTAGCTGGCT GGTCCTGTGCCGCTCCTGCCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8694:886..1708+

>mRNA_S-dermatodea_contig8694.16835.1 ID=mRNA_S-dermatodea_contig8694.16835.1|Name=mRNA_S-dermatodea_contig8694.16835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at S-dermatodea_contig8694:886..1708+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCACGGCCAGACGAGATAGATATATCAGGAGACACCCCTCTCCACCT
AGCGGCCCAGGGAGGCCACACGCAGAGCATATCGGCGCTCTTGACGAGTG
GCGCGAACAGAGACTTGCGTAACGGCCACAACCTAACGCCTCTCTCCCGG
GCTTTCCATGGAAACCATGTTCAGGCGGCGGAGAAGCTTCTTCTGATGGC
CCGGGCAGGCCGGTCAGACGCGAACTACCTAGATGGTTTAGAATACTACT
GGGCGCTGGTCGAGAGGGCCGCCGAGAACCGCCAGCTGGACATGCTCCGG
ATGCTTATCTCGTGGGGCGGCAACCTACCGGAACGACAACTGAAGCTACT
TATACTCAACCCGCTGTTGGGAAGAGTGGCCGACGGTTTCTGTATCCAAA
ATAACGCGTCCATAATCAAGTATCTCATCGAGAGCGGGGCTGACACCGAA
TTCAGCGTGGACGATGGATTTACCGCTCTCCTTAGTGCCGCCAGTAAGCC
TGGTTCGTGCCCTAGAAACATTCTGGCCCTGTTGCGGGGAGGGGCAAACG
TGAATGCCCAGACCCAGGCCGACATGACCGCGCTACACTTCGCGTGCAGG
AGATCGGACGTTGTTGCCGTTAGGCTTCTCCTGAGGTGGGGAGCCGAAGA
AACGGTGACCTCGGACGATGGCCGCACAGCGATGGACGTGGTCGGATCAG
GACCAGGCATCATCAACAGCGACCAAGCTGACGATGATCGGATACGGCGC
ATGTTGGCTCGAGCTCTGACCAATCGATCGTGGCGTCGCCGTAGCTGGCT
GGTCCTGTGCCGCTCCTGCCCGGGAGCACGGCCAGACGAGATAGATATAT
CAGGAGACACCCCTCTCCACCTAGCGGCCCAGGGAGGCCACACGCAGAGC
ATATCGGCGCTCTTGACGAGTGGCGCGAACAGAGACTTGCGTAACGGCCA
CAACCTAACGCCTCTCTCCCGGGCTTTCCATGGAAACCATGTTCAGGCGG
CGGAGAAGCTTCTTCTGATGGCCCGGGCAGGCCGGTCAGACGCGAACTAC
CTAGATGGTTTAGAATACTACTGGGCGCTGGTCGAGAGGGCCGCCGAGAA
CCGCCAGCTGGACATGCTCCGGATGCTTATCTCGTGGGGCGGCAACCTAC
CGGAACGACAACTGAAGCTACTTATACTCAACCCGCTGTTGGGAAGAGTG
GCCGACGGTTTCTGTATCCAAAATAACGCGTCCATAATCAAGTATCTCAT
CGAGAGCGGGGCTGACACCGAATTCAGCGTGGACGATGGATTTACCGCTC
TCCTTAGTGCCGCCAGTAAGCCTGGTTCGTGCCCTAGAAACATTCTGGCC
CTGTTGCGGGGAGGGGCAAACGTGAATGCCCAGACCCAGGCCGACATGAC
CGCGCTACACTTCGCGTGCAGGAGATCGGACGTTGTTGCCGTTAGGCTTC
TCCTGAGGTGGGGAGCCGAAGAAACGGTGACCTCGGACGATGGCCGCACA
GCGATGGACGTGGTCGGATCAGGACCAGGCATCATCAACAGCGACCAAGC
TGACGATGATCGGATACGGCGCATGTTGGCTCGAGCTCTGACCAATCGAT
CGTGGCGTCGCCGTAGCTGGCTGGTCCTGTGCCGCTCCTGCCCG
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