prot_S-dermatodea_contig8676.16824.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8676.16824.1
Unique Nameprot_S-dermatodea_contig8676.16824.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length217
Homology
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 3.670e-110
Identity = 172/217 (79.26%), Postives = 196/217 (90.32%), Query Frame = 0
Query:    1 RKTCKIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQV 217
            R  C+IWYDLAEYE+SLGEADRAA VYR+AV+VIP SDLLRVAQADLEERRG +E AD AWKAFL+DR STTGHVMYLRFVRRN+GKEAARRAFG TRALRR+G VG+RLYLAHASIELHVNGE EVARRVLEHGLSQH+GY+AEPEYV+EY+DFL+QRND+ NLRVLFER+L    M  E AR+VWE+FV+LELCL++TGGSL+KA++VE RM QV
Sbjct:  354 RHFCEIWYDLAEYEYSLGEADRAAAVYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRRSTTGHVMYLRFVRRNMGKEAARRAFGATRALRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQDVERRMNQV 570          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: K8YVA5_NANGC (Cleavage stimulation factor subunit 3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVA5_NANGC)

HSP 1 Score: 143 bits (361), Expect = 1.380e-36
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 0
Query:    5 KIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLD-----------------------SRLMSPEMARMVWEKFVKLELCLAT 199
            ++WY+ A YE    +   AA ++  A + +PD  LL +A A+LE+ RG  +      K FL    ST G+V Y  +VRR  GKEAAR+ F  T+ LRR G + +  YLAHA +E HVN E +VARRVL+HGLS H  ++ EPEYV+  ++ L++  D+ N+R L +R L                        + + + E AR +W K ++ E C+A+
Sbjct:  289 EVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPIWFKLLEFETCVAS 506          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A4D9CTB6_9STRA (Suf domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTB6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.330e-36
Identity = 86/235 (36.60%), Postives = 129/235 (54.89%), Query Frame = 0
Query:    5 KIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLD-----------------------SRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 216
            ++WY+ A YE    +   AA ++  A + +PD  LL +A A+LE+ RG  +      K FL    ST G+V Y  +VRR  GKEAAR+ F  T+ LRR G + +  YLAHA +E HVN E +VARRVL+HGLS H  ++ EPEYV+  ++ L++  D+ N+R L +R L                        + + + E AR VW K ++ E C+A+     ++ E V+ R+ +
Sbjct:  390 EVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPVWFKLLEFETCVASDRDP-ARVERVQQRIAE 623          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: UPI0009016C6C (cleavage stimulation factor subunit 77 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009016C6C)

HSP 1 Score: 139 bits (351), Expect = 1.700e-34
Identity = 83/213 (38.97%), Postives = 128/213 (60.09%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGH--VMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 216
            IWYD A +    G  D A  VY+ +++ +PDS++LR A A+LEE RG +++A + +++ + D  + T    + ++RF+RR  G EAAR+ F D R   +S    + +Y+A A +E  +N +A+VAR V E GL     +M EPEY++EY DFL + ND  N+R LFER L S  + PE +  VW++F + E     T G L+   +VE R ++
Sbjct:  360 IWYDYATWHAKSGSVDSAIKVYQRSLKALPDSEMLRYAYAELEESRGAIQAAKKVYESLMGDGSNATALSLIQFIRFLRRTEGVEAARKYFLDAR---KSPNCTYHVYVAQAMMEFCLNKDAKVARNVFEAGLKN---FMHEPEYILEYADFLSRLNDDINIRALFERALSS--LPPEESLEVWKRFSQFE----QTYGDLASMLKVEQRRKE 560          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A4Y7IRX5_PAPSO (Suf domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IRX5_PAPSO)

HSP 1 Score: 127 bits (318), Expect = 4.420e-30
Identity = 72/213 (33.80%), Postives = 126/213 (59.15%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRD--RCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 216
            +WYD   +    G  D A  +Y +A++V+PDS+LL+ A A+LEE RG ++ A + +++ + D    S   H+ ++RF+RR  G EAAR+ F D R+        + +++A+A +    + + ++A  V E G+ +   +M EPEY++EY DFL + ND  N+R LFER L++  + PE +  +W+++ + E     T G+L+   +VE R ++
Sbjct:  299 VWYDYVTWHADNGSMDLAVKIYEKALKVLPDSELLKYAYAELEESRGEIQPAKKIYESLIGDGVNASALAHIQFIRFLRRTEGIEAARKYFVDARSYPN---CTYHVFVAYAKMAFCQDKDPKLAHNVFEAGMKR---FMHEPEYILEYADFLCRLNDDTNVRALFERALNT--LPPEKSVEIWKRYTQFE----QTYGNLASILKVEQRRKE 499          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: UPI00087070CC (cleavage stimulation factor subunit 77 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI00087070CC)

HSP 1 Score: 126 bits (317), Expect = 4.660e-30
Identity = 77/212 (36.32%), Postives = 123/212 (58.02%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMR 215
            +WYD A +    G  D A  V++ A++V+PDS++LR A A+LEE RG ++   + ++  L D  +T+   H+ ++RF+RR  G EAAR+ F D R   +S    + +Y+A+A +   ++ + ++A  V E GL +   +M EP Y++EY DFL + ND  N+R LFER L S  +  E +  VW++F   E     T G L+   +VE R +
Sbjct:  156 LWYDYAMWHAKSGSVDTAIKVFQRALKVLPDSEMLRYAYAELEESRGAIQPTKKIYEGLLGDGINTSALAHIQFIRFLRRTEGVEAARKYFLDAR---KSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLTRLNDDRNIRALFERALSS--LPSEESVEVWKRFTIFE----QTYGDLASMLKVEQRKK 355          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A4Y7IN49_PAPSO (Suf domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IN49_PAPSO)

HSP 1 Score: 126 bits (317), Expect = 5.900e-30
Identity = 75/213 (35.21%), Postives = 126/213 (59.15%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRD--RCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 216
            +WYD A +    G  + A  VY++A++V+PDS+LL+ A A++EE RG ++SA + +++ L D    S   H+ ++RF+RR  G EAAR+ F D           + +++A+A +    + + ++A  V E G+ +   +M EPEY++EY DFL + ND  N+R LFER L S  + PE +  VW+++ + E     T G+L+   +VE R ++
Sbjct:  283 VWYDYATWHADNGSMNLAVKVYQKALKVLPDSELLKYAYAEMEESRGEIQSAKKIYESLLGDGVNASALAHIQFIRFLRRTEGIEAARKYFVDAHQFPN---CTYHVFVAYAMMAFCQDKDPKLAHNVFEAGMKR---FMHEPEYILEYTDFLCRLNDDKNVRSLFERALSS--LPPEKSVEVWKRYTQFE----QTYGNLASILKVEQRRKE 483          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A5N5HKI9_9ROSA (Cleavage stimulation factor subunit 3 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HKI9_9ROSA)

HSP 1 Score: 126 bits (317), Expect = 6.060e-30
Identity = 77/212 (36.32%), Postives = 123/212 (58.02%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMR 215
            +WYD A +    G  D A  V++ A++V+PDS++LR A A+LEE RG ++   + ++  L D  +T+   H+ ++RF+RR  G EAAR+ F D R   +S    + +Y+A+A +   ++ + ++A  V E GL +   +M EP Y++EY DFL + ND  N+R LFER L S  +  E +  VW++F   E     T G L+   +VE R +
Sbjct:  283 LWYDYAMWHAKSGSVDTAIKVFQRALKVLPDSEMLRYAYAELEESRGAIQPTKKIYEGLLGDGINTSALAHIQFIRFLRRTEGVEAARKYFLDAR---KSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLTRLNDDRNIRALFERALSS--LPSEESVEVWKRFTIFE----QTYGDLASMLKVEQRKK 482          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A388JTY0_CHABU (Suf domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTY0_CHABU)

HSP 1 Score: 125 bits (315), Expect = 1.240e-29
Identity = 75/214 (35.05%), Postives = 124/214 (57.94%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQV 217
            +WY+ A ++   G+ D A  V++ A+  +PDS +L  A A+ +E  G +  A   + A +R+  +     ++ ++RF+RR  G +AAR+ F    A R+S    + +Y+A A +EL ++ + +VAR + E GL +   Y+ EP Y++EY+DFL+Q ND  N+R L ER L   ++ PE +  VW+KF++ EL      G L    +VE R R+V
Sbjct:  441 MWYNYATWQAEQGQHDPAVRVFQRALMALPDSAVLHYAFAEYQESNGNVRDARSVYDALIRNDAAANALAYIQFMRFIRRTEGVDAARKVF---MAARKSPMCTYHVYVASAKMELCIDKDPKVARNIFELGLKK---YIHEPAYILEYLDFLMQLNDDRNIRALLERALS--VLPPEESAEVWDKFLEFELLY----GDLQSVLKVEKRRREV 642          
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A1Q3BBS2_CEPFO (Suf domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BBS2_CEPFO)

HSP 1 Score: 124 bits (311), Expect = 3.810e-29
Identity = 79/214 (36.92%), Postives = 125/214 (58.41%), Query Frame = 0
Query:    6 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRC-STTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 216
            IWYD A +    G+ D A  V+   ++VIP S++L+ A A++EE RG +++A R ++  L D   ++TG   + ++RF+RR  G EAAR+ F +     +S    +++Y+A+A +   ++ + +VAR V E G  +   +M EP YV+ YVDFL   ND  N+R LFER L S  + PE +  VWE+FV+ E       G L+   +VE R ++
Sbjct:  282 IWYDYAMWRVKSGDVDAAVKVFERGLKVIPSSEILKYAYAEMEESRGMVKNAKRIYEGILGDGDDASTGLARIQFIRFLRRTEGVEAARKYFVEAS---KSPDCTYQVYVAYAMLAFCLDKDQKVARNVFEAGFKR---FMNEPVYVLAYVDFLYTLNDDNNIRALFERALSS--LPPENSVEVWERFVQFEQSF----GDLASMLKVEQRRKE 483          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI3.670e-11079.26Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
K8YVA5_NANGC1.380e-3637.61Cleavage stimulation factor subunit 3 n=1 Tax=Nann... [more]
A0A4D9CTB6_9STRA2.330e-3636.60Suf domain-containing protein n=2 Tax=Monodopsidac... [more]
UPI0009016C6C1.700e-3438.97cleavage stimulation factor subunit 77 n=3 Tax=Ipo... [more]
A0A4Y7IRX5_PAPSO4.420e-3033.80Suf domain-containing protein n=3 Tax=Papaver somn... [more]
UPI00087070CC4.660e-3036.32cleavage stimulation factor subunit 77 n=1 Tax=Pyr... [more]
A0A4Y7IN49_PAPSO5.900e-3035.21Suf domain-containing protein n=3 Tax=Papaver somn... [more]
A0A5N5HKI9_9ROSA6.060e-3036.32Cleavage stimulation factor subunit 3 n=1 Tax=Pyru... [more]
A0A388JTY0_CHABU1.240e-2935.05Suf domain-containing protein n=1 Tax=Chara brauni... [more]
A0A1Q3BBS2_CEPFO3.810e-2936.92Suf domain-containing protein (Fragment) n=1 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 18..50
e-value: 26.0
score: 12.3
coord: 160..196
e-value: 190.0
score: 6.1
coord: 123..158
e-value: 73.0
score: 9.1
IPR008847Suppressor of forkedPFAMPF05843Sufcoord: 74..217
e-value: 8.5E-30
score: 104.8
NoneNo IPR availableGENE3D1.25.40.1040coord: 1..217
e-value: 6.6E-46
score: 159.0
NoneNo IPR availablePFAMPF13428TPR_14coord: 6..46
e-value: 2.5E-5
score: 24.7
NoneNo IPR availablePANTHERPTHR19980RNA CLEAVAGE STIMULATION FACTORcoord: 5..216
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 4..37
score: 9.647
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 4..37
score: 9.901
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 4..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8676contigS-dermatodea_contig8676:88..7370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8676.16824.1mRNA_S-dermatodea_contig8676.16824.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8676 88..7370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8676.16824.1 ID=prot_S-dermatodea_contig8676.16824.1|Name=mRNA_S-dermatodea_contig8676.16824.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
RKTCKIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEER
RGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRAL
RRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVM
EYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATT
GGSLSKAEEVESRMRQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR008847Suf
IPR019734TPR_repeat
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom_sf