mRNA_S-dermatodea_contig8676.16824.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8676.16824.1
Unique NamemRNA_S-dermatodea_contig8676.16824.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 3.670e-110
Identity = 172/217 (79.26%), Postives = 196/217 (90.32%), Query Frame = 1 
Query:    1 RKTCKIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQV 651
            R  C+IWYDLAEYE+SLGEADRAA VYR+AV+VIP SDLLRVAQADLEERRG +E AD AWKAFL+DR STTGHVMYLRFVRRN+GKEAARRAFG TRALRR+G VG+RLYLAHASIELHVNGE EVARRVLEHGLSQH+GY+AEPEYV+EY+DFL+QRND+ NLRVLFER+L    M  E AR+VWE+FV+LELCL++TGGSL+KA++VE RM QV
Sbjct:  354 RHFCEIWYDLAEYEYSLGEADRAAAVYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRRSTTGHVMYLRFVRRNMGKEAARRAFGATRALRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQDVERRMNQV 570
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: K8YVA5_NANGC (Cleavage stimulation factor subunit 3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVA5_NANGC)

HSP 1 Score: 143 bits (361), Expect = 1.380e-36
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 1 
Query:   13 KIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLD-----------------------SRLMSPEMARMVWEKFVKLELCLAT 597
            ++WY+ A YE    +   AA ++  A + +PD  LL +A A+LE+ RG  +      K FL    ST G+V Y  +VRR  GKEAAR+ F  T+ LRR G + +  YLAHA +E HVN E +VARRVL+HGLS H  ++ EPEYV+  ++ L++  D+ N+R L +R L                        + + + E AR +W K ++ E C+A+
Sbjct:  289 EVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPIWFKLLEFETCVAS 506
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A4D9CTB6_9STRA (Suf domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTB6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.330e-36
Identity = 86/235 (36.60%), Postives = 129/235 (54.89%), Query Frame = 1 
Query:   13 KIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLD-----------------------SRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 648
            ++WY+ A YE    +   AA ++  A + +PD  LL +A A+LE+ RG  +      K FL    ST G+V Y  +VRR  GKEAAR+ F  T+ LRR G + +  YLAHA +E HVN E +VARRVL+HGLS H  ++ EPEYV+  ++ L++  D+ N+R L +R L                        + + + E AR VW K ++ E C+A+     ++ E V+ R+ +
Sbjct:  390 EVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAGVSAGPGAGGEREEVATAAAAMAAAEKARPVWFKLLEFETCVASDRDP-ARVERVQQRIAE 623
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: UPI0009016C6C (cleavage stimulation factor subunit 77 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009016C6C)

HSP 1 Score: 139 bits (351), Expect = 1.700e-34
Identity = 83/213 (38.97%), Postives = 128/213 (60.09%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTGH--VMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 648
            IWYD A +    G  D A  VY+ +++ +PDS++LR A A+LEE RG +++A + +++ + D  + T    + ++RF+RR  G EAAR+ F D R   +S    + +Y+A A +E  +N +A+VAR V E GL     +M EPEY++EY DFL + ND  N+R LFER L S  + PE +  VW++F + E     T G L+   +VE R ++
Sbjct:  360 IWYDYATWHAKSGSVDSAIKVYQRSLKALPDSEMLRYAYAELEESRGAIQAAKKVYESLMGDGSNATALSLIQFIRFLRRTEGVEAARKYFLDAR---KSPNCTYHVYVAQAMMEFCLNKDAKVARNVFEAGLKN---FMHEPEYILEYADFLSRLNDDINIRALFERALSS--LPPEESLEVWKRFSQFE----QTYGDLASMLKVEQRRKE 560
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A4Y7IRX5_PAPSO (Suf domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IRX5_PAPSO)

HSP 1 Score: 127 bits (318), Expect = 4.420e-30
Identity = 72/213 (33.80%), Postives = 126/213 (59.15%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRD--RCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 648
            +WYD   +    G  D A  +Y +A++V+PDS+LL+ A A+LEE RG ++ A + +++ + D    S   H+ ++RF+RR  G EAAR+ F D R+        + +++A+A +    + + ++A  V E G+ +   +M EPEY++EY DFL + ND  N+R LFER L++  + PE +  +W+++ + E     T G+L+   +VE R ++
Sbjct:  299 VWYDYVTWHADNGSMDLAVKIYEKALKVLPDSELLKYAYAELEESRGEIQPAKKIYESLIGDGVNASALAHIQFIRFLRRTEGIEAARKYFVDARSYPN---CTYHVFVAYAKMAFCQDKDPKLAHNVFEAGMKR---FMHEPEYILEYADFLCRLNDDTNVRALFERALNT--LPPEKSVEIWKRYTQFE----QTYGNLASILKVEQRRKE 499
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: UPI00087070CC (cleavage stimulation factor subunit 77 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI00087070CC)

HSP 1 Score: 126 bits (317), Expect = 4.660e-30
Identity = 77/212 (36.32%), Postives = 123/212 (58.02%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMR 645
            +WYD A +    G  D A  V++ A++V+PDS++LR A A+LEE RG ++   + ++  L D  +T+   H+ ++RF+RR  G EAAR+ F D R   +S    + +Y+A+A +   ++ + ++A  V E GL +   +M EP Y++EY DFL + ND  N+R LFER L S  +  E +  VW++F   E     T G L+   +VE R +
Sbjct:  156 LWYDYAMWHAKSGSVDTAIKVFQRALKVLPDSEMLRYAYAELEESRGAIQPTKKIYEGLLGDGINTSALAHIQFIRFLRRTEGVEAARKYFLDAR---KSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLTRLNDDRNIRALFERALSS--LPSEESVEVWKRFTIFE----QTYGDLASMLKVEQRKK 355
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A4Y7IN49_PAPSO (Suf domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IN49_PAPSO)

HSP 1 Score: 126 bits (317), Expect = 5.900e-30
Identity = 75/213 (35.21%), Postives = 126/213 (59.15%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRD--RCSTTGHVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 648
            +WYD A +    G  + A  VY++A++V+PDS+LL+ A A++EE RG ++SA + +++ L D    S   H+ ++RF+RR  G EAAR+ F D           + +++A+A +    + + ++A  V E G+ +   +M EPEY++EY DFL + ND  N+R LFER L S  + PE +  VW+++ + E     T G+L+   +VE R ++
Sbjct:  283 VWYDYATWHADNGSMNLAVKVYQKALKVLPDSELLKYAYAEMEESRGEIQSAKKIYESLLGDGVNASALAHIQFIRFLRRTEGIEAARKYFVDAHQFPN---CTYHVFVAYAMMAFCQDKDPKLAHNVFEAGMKR---FMHEPEYILEYTDFLCRLNDDKNVRSLFERALSS--LPPEKSVEVWKRYTQFE----QTYGNLASILKVEQRRKE 483
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A5N5HKI9_9ROSA (Cleavage stimulation factor subunit 3 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HKI9_9ROSA)

HSP 1 Score: 126 bits (317), Expect = 6.060e-30
Identity = 77/212 (36.32%), Postives = 123/212 (58.02%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMR 645
            +WYD A +    G  D A  V++ A++V+PDS++LR A A+LEE RG ++   + ++  L D  +T+   H+ ++RF+RR  G EAAR+ F D R   +S    + +Y+A+A +   ++ + ++A  V E GL +   +M EP Y++EY DFL + ND  N+R LFER L S  +  E +  VW++F   E     T G L+   +VE R +
Sbjct:  283 LWYDYAMWHAKSGSVDTAIKVFQRALKVLPDSEMLRYAYAELEESRGAIQPTKKIYEGLLGDGINTSALAHIQFIRFLRRTEGVEAARKYFLDAR---KSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKR---FMHEPVYILEYADFLTRLNDDRNIRALFERALSS--LPSEESVEVWKRFTIFE----QTYGDLASMLKVEQRKK 482
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A388JTY0_CHABU (Suf domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JTY0_CHABU)

HSP 1 Score: 125 bits (315), Expect = 1.240e-29
Identity = 75/214 (35.05%), Postives = 124/214 (57.94%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRCSTTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQV 651
            +WY+ A ++   G+ D A  V++ A+  +PDS +L  A A+ +E  G +  A   + A +R+  +     ++ ++RF+RR  G +AAR+ F    A R+S    + +Y+A A +EL ++ + +VAR + E GL +   Y+ EP Y++EY+DFL+Q ND  N+R L ER L   ++ PE +  VW+KF++ EL      G L    +VE R R+V
Sbjct:  441 MWYNYATWQAEQGQHDPAVRVFQRALMALPDSAVLHYAFAEYQESNGNVRDARSVYDALIRNDAAANALAYIQFMRFIRRTEGVDAARKVF---MAARKSPMCTYHVYVASAKMELCIDKDPKVARNIFELGLKK---YIHEPAYILEYLDFLMQLNDDRNIRALLERALS--VLPPEESAEVWDKFLEFELLY----GDLQSVLKVEKRRREV 642
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BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Match: A0A1Q3BBS2_CEPFO (Suf domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BBS2_CEPFO)

HSP 1 Score: 124 bits (311), Expect = 3.810e-29
Identity = 79/214 (36.92%), Postives = 125/214 (58.41%), Query Frame = 1 
Query:   16 IWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEERRGCMESADRAWKAFLRDRC-STTG--HVMYLRFVRRNLGKEAARRAFGDTRALRRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVMEYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATTGGSLSKAEEVESRMRQ 648
            IWYD A +    G+ D A  V+   ++VIP S++L+ A A++EE RG +++A R ++  L D   ++TG   + ++RF+RR  G EAAR+ F +     +S    +++Y+A+A +   ++ + +VAR V E G  +   +M EP YV+ YVDFL   ND  N+R LFER L S  + PE +  VWE+FV+ E       G L+   +VE R ++
Sbjct:  282 IWYDYAMWRVKSGDVDAAVKVFERGLKVIPSSEILKYAYAEMEESRGMVKNAKRIYEGILGDGDDASTGLARIQFIRFLRRTEGVEAARKYFVEAS---KSPDCTYQVYVAYAMLAFCLDKDQKVARNVFEAGFKR---FMNEPVYVLAYVDFLYTLNDDNNIRALFERALSS--LPPENSVEVWERFVQFEQSF----GDLASMLKVEQRRKE 483
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8676.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI3.670e-11079.26Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
K8YVA5_NANGC1.380e-3637.61Cleavage stimulation factor subunit 3 n=1 Tax=Nann... [more]
A0A4D9CTB6_9STRA2.330e-3636.60Suf domain-containing protein n=2 Tax=Monodopsidac... [more]
UPI0009016C6C1.700e-3438.97cleavage stimulation factor subunit 77 n=3 Tax=Ipo... [more]
A0A4Y7IRX5_PAPSO4.420e-3033.80Suf domain-containing protein n=3 Tax=Papaver somn... [more]
UPI00087070CC4.660e-3036.32cleavage stimulation factor subunit 77 n=1 Tax=Pyr... [more]
A0A4Y7IN49_PAPSO5.900e-3035.21Suf domain-containing protein n=3 Tax=Papaver somn... [more]
A0A5N5HKI9_9ROSA6.060e-3036.32Cleavage stimulation factor subunit 3 n=1 Tax=Pyru... [more]
A0A388JTY0_CHABU1.240e-2935.05Suf domain-containing protein n=1 Tax=Chara brauni... [more]
A0A1Q3BBS2_CEPFO3.810e-2936.92Suf domain-containing protein (Fragment) n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8676contigS-dermatodea_contig8676:88..7370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.7
Seed ortholog evalue3.1e-92
Seed eggNOG ortholog2880.D8LMJ6
KEGG koko:K14408
KEGG Pathwayko03015,map03015
EggNOG free text desc.mRNA processing
EggNOG OGsCOG0696@1,KOG1914@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size651
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8676.16824.1prot_S-dermatodea_contig8676.16824.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8676 88..7370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.845178-CDS-S-dermatodea_contig8676:87..1831622925358.845178-CDS-S-dermatodea_contig8676:87..183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 88..183 +
1694079879.630303-CDS-S-dermatodea_contig8676:87..1831694079879.630303-CDS-S-dermatodea_contig8676:87..183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 88..183 +
1622925358.8611622-CDS-S-dermatodea_contig8676:2521..26611622925358.8611622-CDS-S-dermatodea_contig8676:2521..2661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 2522..2661 +
1694079879.6442833-CDS-S-dermatodea_contig8676:2521..26611694079879.6442833-CDS-S-dermatodea_contig8676:2521..2661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 2522..2661 +
1622925358.87085-CDS-S-dermatodea_contig8676:6097..63351622925358.87085-CDS-S-dermatodea_contig8676:6097..6335Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 6098..6335 +
1694079879.659988-CDS-S-dermatodea_contig8676:6097..63351694079879.659988-CDS-S-dermatodea_contig8676:6097..6335Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 6098..6335 +
1622925358.8805273-CDS-S-dermatodea_contig8676:7193..73701622925358.8805273-CDS-S-dermatodea_contig8676:7193..7370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 7194..7370 +
1694079879.684372-CDS-S-dermatodea_contig8676:7193..73701694079879.684372-CDS-S-dermatodea_contig8676:7193..7370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8676 7194..7370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8676.16824.1

>prot_S-dermatodea_contig8676.16824.1 ID=prot_S-dermatodea_contig8676.16824.1|Name=mRNA_S-dermatodea_contig8676.16824.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
RKTCKIWYDLAEYEFSLGEADRAADVYREAVQVIPDSDLLRVAQADLEER
RGCMESADRAWKAFLRDRCSTTGHVMYLRFVRRNLGKEAARRAFGDTRAL
RRSGAVGFRLYLAHASIELHVNGEAEVARRVLEHGLSQHQGYMAEPEYVM
EYVDFLLQRNDQANLRVLFERLLDSRLMSPEMARMVWEKFVKLELCLATT
GGSLSKAEEVESRMRQV
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mRNA from alignment at S-dermatodea_contig8676:88..7370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8676.16824.1 ID=mRNA_S-dermatodea_contig8676.16824.1|Name=mRNA_S-dermatodea_contig8676.16824.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7283bp|location=Sequence derived from alignment at S-dermatodea_contig8676:88..7370+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAAAACGTGTAAGATCTGGTACGACCTCGCGGAGTACGAGTTCTCGCT
CGGAGAGGCCGATCGCGCAGCCGACGTGTACAGGGAAGCCGTGCAGGTGA
GGAGAGAACGAGAAGATGTAGTTACTGGTTCGAAAATGAGGGCGATTCAC
ATTATGGGTTATGCTAAGGCAGTAAGTTCCCTGTCTTTACACAAGGCCGA
AAATATCGCAGCTGCCGGTTAGAGCGTGTAGAAATATTAATAGTACACTA
CCATTAATGTGACAGTACCATTGATATTCAAGTACCATTAATATTACAGT
ACCCTTGATATTAGTGTATAGTTAATATTACAGTAACGTTGATATTCCAA
TACAATTATTATTACAGTACCCTTGATATTGCTGTATAATTAATATTACA
GTACCATTGACATAACAGTACCTTTAATATTACAGTACCATTAATATTAC
AGTACCATTAATATTACAGTACCCTTGATATTACTGTATAGTTAATATTA
CAGTACCATTTATATTCCAATACTATTAATATTACAGTACCCTTGATATT
ACTGTATAATTAATATTACAGTACCATTGACATAACAGTACCATTTATAT
TACAGTACCAGTAATATTACAGCTCCATTAATATTACAGTACCAGTGGGG
GGGGGGCAGTTGGTTGTTATTATATTACTGTAATAGTGTGATGATCGATC
AACCAGTAATCGAAACCAAGCACCCTGCTACAACCGGCCTAAAATATACC
ATCAATATCACAGTAAGTGCCAAACGCTAAGCGGTTGGCACATGTAAAAA
TGTTAATATCACAGTACCCCTTTATTACCAGCGCCGACCTGGAATATCAC
AGTGCCAAACGCCAACATGTTGGAGCATGTAACAATATAACGGGAACCTG
AAGCGAGCCGGTTACGACGCTCGCTGGCCATGTGAGAAGACATCACCGCT
TGAGTTAGGTCGGCACTCCCGCAGCTCGCCGATGTCTCGGATGTTGCAGA
CTCACGCTCTCGCGCTTTCCGCGGTGGAGTTGGAGAAAATATATGACGTA
TCGACCCTGCCTTACTGTACATTTGTGTGCCAGTTCAACCACGGGGCGAT
AATTTGTCTAGATTATTATTCCTTTTGGGGCTAAGCTAAGCCTGGGGACG
AAGCCTGTTTTCGGGTTAACTGTTGGCTACCATGATAGCAAAACAGTTAC
CCGAAAACAGCCTTAGTCCCAAAACACAAGGATGTACTTGTAAAATAACA
GCAAACAGTTACTCGAAAACAGCCTTACAAGTCCCAAAAGGGTTAATAGG
CGAGCTGCGGATGTGCCGAACCCAACACATTCGCGATAAAAATATCAAGC
CAAATAGTGATTAGTAGGTGACGGCTATCCCCGCGAAGTGTACGTGGTCG
CTCAATTCTAAAAACGATTTATTTTTGGCCTCAAAATCGTGTACCAGGTA
CCTGGTAGGAAGGATTTTAGTGTACAAAATCGCCCCCAAAATCGTATAGG
AGTTTAGCATGGGCATGGGCATGGTCGCTCTAAAATCGCCATTAAAAGGG
GTCCGAATCGCTACTGCATTATATTATAAAGTTGGGTAAGCCCACAACCT
ACCGCGTCATATACTACTATTATACTACTGTTAATAACACCGCACGGGCG
TAGCCGTGCCACCCACTATTAATACTATTAATAGCATAGTTATAATATCA
ATATTAGTACAATAGTAGTATAATAGTAGTGTAATAGTAGATATCATAGT
AGATATCATACCGCTCTTGCATTACGGAGGCACACAGTATTACAGTAATA
GTAATAGTAATAGTAATAGTATGATAGTTATGAGGACCAAAAAAATGTAC
TAAATAGTATACCCAATATTTGATTTGGCCTTATTATCATACAAAACTAA
ATATTATATCTTCCGGCCTGAAATGTCAATAAAAAAACTATTATAGGAAA
ATAAAAAAAATAAAAATCAAGACTTGATGTCAGTTGTGTACCTCAGTAAT
AGGATCGGTAATATAATCGGTGACAGTTGGGAGTGGAATGTGGTAGTGTG
GTAGTCAATTAGTCAAGCGAACAATCAGTCCATCAATCAAGCCACCAATC
AACCAATCGATCAATCAATGAATGAATCAATGAATGAATGAATGAATGAA
TAAGTCAATCAATCAATCAATTAGTCAATCAACTAAACCAATACGTCAAT
CAAATTTTACCAACCGAACAATCAATCAATCAATCAATCAATCAACCAAT
GAAATAAAATAAATAAAAATAAACAATCAATCAATCAATCAATCAATCAA
TCAATCAATCAATCAACCAATAAAATAAATTAAAATAAAATAAAATCAAT
CAATCCATCGATCAACAGGTCACCCAATAACGTCCCCACTCCCCCATTGG
CTGCATCGCCCGGCGTGCTTGTTGCGTCGTCCAGGTAATCCCGGACAGCG
ACTTGCTTCGCGTGGCACAGGCAGACCTGGAGGAGCGTCGTGGTTGTATG
GAGTCAGCCGACAGGGCATGGAAGGCGTTTCTTCGGGACCGCTGCAGCAC
CACTGGGCACGTGATGTACCTCAGGTGTCTTGATCGTGTTGATGGTGTTA
TTAATAGTGTTGTTCTTCGCAGCTATTACTATTAGTACAATAAAATAAAA
TCAACCTTGAAATATATCAATCATGGGACAGATCAATATTAACAGTGAAA
CAAACCAACCATGGAACTTTAACTCTTTCGGTACTAATGTATTATTAATA
GCATTCAATTACTCCTATACTACTGTAGTATTACAGTAGTAGGGCTCTCC
GAAACGACCGAAAACTCTCTTGATGGCAGTTGACAACTACGACAGCCCCC
GATTCCCTTGAGCTCCGTTCTCTCTCCTTCCTGCTTCATAACCCATGAGG
TCCGCCCGCTCTGCTTCAAGCACGCCTCATTACGCGCTAACCAGCGCTCC
AAGCAGTATTAGGGGCTAGTACCTGAAGGGTTAATAGTCGTTCATAAAAC
AAATGTAACATTGAAGCAAAACAAAATCAACCAGGAGATAAGTAAATCAT
GGAACAAATCAGTGAGGAATCAAACCAATATTATAAAATATGTTACAGCT
ATATTATACCATGCGTGATTATACATTTTCTCCTTAACTCTTTGCGAAAG
CATCTGACCACAAGTCGGATCGGCTAAACCCTTTTCGGACGAAGGCTGTT
TTCGGGTAGTAACTGCTGTCTACCATAGTAATATAGCAAACAGTTACCCG
AAAACAGCCTTAACCCTTTTGGGACTAAAAGGCTGTTTTGGGGTAACTGT
TTGCTATTGCTGTTTACCCTTTTCGGACTAAGCCTGGGGACGAAGCCTGT
TTTCGGGGAGCTGTTGGCTACCATAATAGCAAACAGTTACCCAAAAACAG
CCTTAGTCCCAAAAGGGTTAAGCCGATCGGGAATACGTGTGCAAATAATC
AATCATTCAATCAACCAATCAAGTCAGTCAATCAAGTCAGTCATTCAATC
GACCGACGAGTTAAAAGGGTCGCCAGACGTGGAAACGTGCACGCACATAC
CGTCTTATTAGTTAATACTGCTGTGAAGGTGATACAATCAACAATCAAAT
AGATGAAGCCAATTCAATCAACCCCGCCTATTACTATTAGTATTTATATC
ATACGTCCAATTATTTAATATAATACAGTATTATAATGTTGTTACTACTG
TATCACAGTAGCCGTCGTTCGGTCGTTGTGGCATTGGTTGTAACTATTAA
GATATAGATATAGCGTCCGCTCTAAAAATCACAAAAATTGAGCATAAATA
TTAAATAGCTGCCATGCCCAACACCACAAAGCACAATAAACAAGAGATCT
TTTGACGCTACTGCACACATCACAATCACACCTAAAAAAAATGTTTGCAA
GGTGTCCGAGTATCGTAACAACGTTTCAACAAAGCTATTGAATTGTATAT
TGTATTGTATATTGTAGGATACATTATTACATTGATGCTGATGCTGATGC
TGATGCTCGCAGGGAGACGACGCCGATCCCGCCAGATTGCCAACATGTGC
GCGGCACCGCCATCCCTTTGTTTGATGGTACATCATGTGATGATCGAGAT
TCACGCGGGTTCTCAGCCCGGCTGAGCGTCTGTCCGATCGAGCGACCGAG
GCGAGTGACCGAGGCGAGCGAGCGAGGCGAGCGAGCGAGGGCGGGCGACG
CGAGTATTCCGCAGAAAACTGGTCCTGATAACTATCTTTATTAATTAATG
CATTGATACCGCATCTTTGAACCTTTTTTTCAATACTATTTCCTATACGA
TTTTGAGGCCGATTTTTTCTAGGGCGATTGCGTACACTAAATTCCTACAA
GTATACGATCTTGAGGCCAAACAAGTTGATGTTTTGTGTTGAGCGCCAAG
TTGTGAAAATAGTAGATTTTTTCACGAAACGGGCGTATCCTAAACTACTA
TACCTACTGTGCAAAATTATTCTCTTTTCAACAGTTGGCGCTCAACACAA
AAATCAAGTTGTTTGGCATCACTTTTCCTGTAGGATTCCGGTGACACGAT
ATCGTTCTCTCTTAAATCGCTATTAAAAATCGGTCAAAGCGCTATAAATT
AATAAAGATAGATATAATAGTAGCTATAGTAGTTTAGGCTACGCCCGCGA
GGTGCAAAATTATTCTCTTTTCAACAGTTGGCGCTCAACACAAAAATCAA
GTTGTTTGGCATCACTCTTCCTGTAGGATTCCGGTGACACGATATCGTTC
TCTCTTAAATCGCTATTAAAAATCGGTCAAAGCGCTATAAATTAATAAAG
ATAGATATAATAGTAGCTATAGTAGTTTAGGCTACGCCCGCGAGGTGCAA
AATTATTCTCTTTTCAACAGTTGGCGCTCAACACAAAAATCAAGTTGTTT
GGCATCACTCTTCCTGTAGGATTCCGGTGACACGATATCGTTCTCTCTTA
AATCGCTATTAAAAATCGGTCAAAGCGCTATAAATTAATAAAGATAGATA
TAATAGTAGCTATAGTAGTTTAGGCTACGCCCGCGAGGTGCAAAATTATT
CTCTTTTAACAGTTGGCGCTCAACACAAACATAAAGTTGTTTGGCATCAC
TTTTCCTGTAGGATTCCGGTGACGCGATATCGTTCTCTCTTAAATCGCTA
TTAAAAATCGGTCAAAGCGCTATAAATTAATAAAGATAAGATAATAGTAG
CTATAGTAGTTTAGGCTACGCCCGCGAGGTGCAAAATTATTCTCTTTTAA
CAGTTGGCGCTTAACACAAACATAAAGTTGTTTGGCATCACGCTTCCTGG
AGGATTCCGGTGACACGATATCGTTCTATCTTAAATCGCTGTTAAAAATC
GGTCGAAGCGCTATAAATAAAATAAAATAAAATAAAAATAATAATAAAAA
TAAAATAAAATAAAAATAATAATAAAAATAAAATAAAATAAAAATAATAA
TAAAAATAAAATAAAATAAAAATAATAATAAAAATAAATAAATAATAAAA
AAATATTTATATTTATATTTATATTTATATTTATTTTATATTTATTTATA
TTTTATACATATTATATATTATATCTTTTATTAATTTATAGCGCTTCGAC
CGATTTTTAACAGCGATTTAAGATAGAACGATATCGTGTCACCGGAATCC
TGTAGGAAAAAGTGATGCCAAACAACTTGATGTTTGTGTTGAGCGCCAAG
TGTTGAAAAGAGAAGATTTTTGCACCTCGCGGGCGTAGCCTAAACTACTA
TACCTATTATTAATTAATAGCGCTTTGACCGATTTTTAATAGCGATGCAA
GAGAGAACGATATCGTGTCACCGGAATCCTACAGGAAAAGTGATGCCAAA
CAACTTGATTTTTGTGTCCAGCGCCAAGTGCTGAAAATAGTACAAGTTTT
CACCTAACGGGCGTAGCCTCACCGTGGCTATTAATACCTACTACTCTATT
CATATTAACAGTTAATACGGATATTACTGTATGACTCCATTATCTTGCGT
AACCCCATAGATTCGTCAGGCGGAACCTCGGCAAGGAGGCCGCGCGGCGA
GCGTTCGGAGACACTCGCGCCCTTCGGCGGTCGGGGGCTGTGGGGTTCCG
GCTGTACCTGGCCCATGCCTCGATCGAGCTTCACGTTAACGGGGAGGCGG
AGGTAGCGAGGAGGGTGTTGGAGCATGGACTGTCGCAGCACCAGGGGTAC
ATGGCGGAGCCAGAGTATGTGATGGAGTACGTGGACTTCTTGCTTCAGGT
ATGTTGTTGTTGTTGTTGATGTTCGTGTTGTGTTTGTGGTGTGTGTGTGT
GTGTGTGTGTGTGTTTGTATTGTGATAAGACACCATAGCATCATATGTAA
CAACTGAGCCTCCATAGGTGTAGCTTGGACCATCTTCCCTCTTGTCGGTA
TTTAACCAATCAACCAATCATTGTNNNNNNNNNNATCTTCCCTCTTGAAA
AGGTGGGACCCCAACGCTCGCTCTATGTTTCTGAAATCTTAATTTTTTTA
GGGGGTGGTCACATGTAACAAGTGAGACTCCATAAGTGTATGTAGCTTGG
AGCATTTTCCCTCTCGAAAAGGTGGAAGGGACCCCAACGCTCGCTCTGTG
TTTCTGAAAATGTTCATTTTTTTAGGGGGTTAGCGGGTTTTTCTTTTGGC
TTTTGTTTGGTTGTTTGTTTGTTTTTTTTGTTTTTTTTTTTGCGGCAGAA
TATCATACGATGTGGTTGTTGTCTTTTCACACAAGGTGGAAGTTTTGGAT
GCTTTGTTTTTGTTTGAAGATGAAGGAAGGCTATCACTTGCTCGTCCCCA
AAACAAACAAACAAACCCCATGTCCCCGACACACCCAACCGTAAACCTCC
GCGGCCTCTCATTCCTCCCTAACCCTCCCCTCAAGGCGGAATGCATAGCA
AAGCAAAGTCCACCCCCCCGGGAAAAAAAGGTCCTGCCCCGATGAGTTAT
GGATTGGGTTGTTTTTAGACATCTTCTGTTTTGTGTTTTTTTTCATTCGG
GGGGAAAAAAAAACGCCACCCCCCTACGTTTCGATTCGCGTCTCTCTAAT
TTGAATTTTTCCGACCATAACCCCAACCCAAACAAAAAAAACGAAAAAAA
TCCCAGCGGAACGACCAAGCGAACCTTCGAGTTCTCTTCGAGCGCTTGCT
GGACTCGCGCTTGATGTCCCCAGAGATGGCGAGGATGGTCTGGGAGAAGT
TCGTGAAGCTGGAGCTGTGTCTGGCGACGACGGGAGGCAGTCTGTCCAAG
GCGGAGGAGGTGGAGTCTCGCATGCGCCAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8676:88..7370+

>mRNA_S-dermatodea_contig8676.16824.1 ID=mRNA_S-dermatodea_contig8676.16824.1|Name=mRNA_S-dermatodea_contig8676.16824.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig8676:88..7370+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAAAACGTGTAAGATCTGGTACGACCTCGCGGAGTACGAGTTCTCGCT
CGGAGAGGCCGATCGCGCAGCCGACGTGTACAGGGAAGCCGTGCAGCGCA
AAACGTGTAAGATCTGGTACGACCTCGCGGAGTACGAGTTCTCGCTCGGA
GAGGCCGATCGCGCAGCCGACGTGTACAGGGAAGCCGTGCAGGTAATCCC
GGACAGCGACTTGCTTCGCGTGGCACAGGCAGACCTGGAGGAGCGTCGTG
GTTGTATGGAGTCAGCCGACAGGGCATGGAAGGCGTTTCTTCGGGACCGC
TGCAGCACCACTGGGCACGTGATGTACCTCAGGTAATCCCGGACAGCGAC
TTGCTTCGCGTGGCACAGGCAGACCTGGAGGAGCGTCGTGGTTGTATGGA
GTCAGCCGACAGGGCATGGAAGGCGTTTCTTCGGGACCGCTGCAGCACCA
CTGGGCACGTGATGTACCTCAGATTCGTCAGGCGGAACCTCGGCAAGGAG
GCCGCGCGGCGAGCGTTCGGAGACACTCGCGCCCTTCGGCGGTCGGGGGC
TGTGGGGTTCCGGCTGTACCTGGCCCATGCCTCGATCGAGCTTCACGTTA
ACGGGGAGGCGGAGGTAGCGAGGAGGGTGTTGGAGCATGGACTGTCGCAG
CACCAGGGGTACATGGCGGAGCCAGAGTATGTGATGGAGTACGTGGACTT
CTTGCTTCAGATTCGTCAGGCGGAACCTCGGCAAGGAGGCCGCGCGGCGA
GCGTTCGGAGACACTCGCGCCCTTCGGCGGTCGGGGGCTGTGGGGTTCCG
GCTGTACCTGGCCCATGCCTCGATCGAGCTTCACGTTAACGGGGAGGCGG
AGGTAGCGAGGAGGGTGTTGGAGCATGGACTGTCGCAGCACCAGGGGTAC
ATGGCGGAGCCAGAGTATGTGATGGAGTACGTGGACTTCTTGCTTCAGCG
GAACGACCAAGCGAACCTTCGAGTTCTCTTCGAGCGCTTGCTGGACTCGC
GCTTGATGTCCCCAGAGATGGCGAGGATGGTCTGGGAGAAGTTCGTGAAG
CTGGAGCTGTGTCTGGCGACGACGGGAGGCAGTCTGTCCAAGGCGGAGGA
GGTGGAGTCTCGCATGCGCCAGGTGCGGAACGACCAAGCGAACCTTCGAG
TTCTCTTCGAGCGCTTGCTGGACTCGCGCTTGATGTCCCCAGAGATGGCG
AGGATGGTCTGGGAGAAGTTCGTGAAGCTGGAGCTGTGTCTGGCGACGAC
GGGAGGCAGTCTGTCCAAGGCGGAGGAGGTGGAGTCTCGCATGCGCCAGG
TG
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