mRNA_S-dermatodea_contig867.16812.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig867.16812.1
Unique NamemRNA_S-dermatodea_contig867.16812.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A482UXY9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UXY9_9ARCH)

HSP 1 Score: 81.3 bits (199), Expect = 1.420e-18
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   40 LIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLG 168
            +IDDDL+RMLMTGLI+N+TITYLD+SHNKITNHGARLLSKLLG
Sbjct:    1 MIDDDLLRMLMTGLIKNTTITYLDMSHNKITNHGARLLSKLLG 43
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A7S2S000_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S000_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.270e-17
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   37 NLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLGGNS 177
            NLIDDDL+RMLMTGLI+N +IT+LDVSHNKITNHG RLL+KLLGG S
Sbjct:  147 NLIDDDLLRMLMTGLIKNDSITHLDVSHNKITNHGVRLLAKLLGGQS 193
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: F0YNH4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNH4_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 5.090e-15
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 DFDSSSRLLGQGNLIDDDLMRMLMTGLIR---NSTITYLDVSHNKITNHGARLLSKLLGGNSVLTTLNLA 201
            D ++ + L+ Q NLIDDDL+RMLMTGLI+   +    YL  SHNK+TNHG RLLSKLLG  SVLT LNLA
Sbjct:   87 DSENMTTLVLQSNLIDDDLLRMLMTGLIKVLFHDFSIYL--SHNKVTNHGVRLLSKLLGARSVLTNLNLA 154
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: D8LCL7_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCL7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.140e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   22 LLGQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKIT 132
            L+ QGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKIT
Sbjct:  312 LVLQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKIT 348
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A835Z8G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.530e-12
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   31 QGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLGGNS--------VLTTLNLADNQV 213
            +G L+DDDL+RML  GL R +T+T+LD+SHN+I +HGARLL++LL G           LT L+LADN +
Sbjct:  231 RGGLVDDDLLRMLAAGLARAATLTHLDLSHNRIADHGARLLARLLCGXXXXXXXXXXALTALSLADNAI 299
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A7S3GG36_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GG36_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 2.010e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   37 NLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLG-GNSVLTTLNLADNQV 213
            NL+DDD +R+L TGL  N TIT LD+SHNKI + G R L+K+L     VL+ LNLADNQV
Sbjct:   75 NLLDDDKVRILATGLKDNGTITALDLSHNKIADRGTRALAKILSPATCVLSHLNLADNQV 134
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A7S3LUM3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LUM3_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.420e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   37 NLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLG-GNSVLTTLNLADNQV 213
            NL+DDD +R+L TGL  N TIT LD+SHNKI + G R L+K+L     VL+ LNLADNQV
Sbjct:  212 NLLDDDKVRILATGLKDNGTITALDLSHNKIADRGTRALAKILSPATCVLSHLNLADNQV 271
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BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A7S3GGA2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGA2_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.420e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   37 NLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLG-GNSVLTTLNLADNQV 213
            NL+DDD +R+L TGL  N TIT LD+SHNKI + G R L+K+L     VL+ LNLADNQV
Sbjct:  212 NLLDDDKVRILATGLKDNGTITALDLSHNKIADRGTRALAKILSPATCVLSHLNLADNQV 271
[Close]
BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: J9IB95_9SPIT (Flagellar associated protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IB95_9SPIT)

HSP 1 Score: 55.5 bits (132), Expect = 3.060e-7
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   34 GNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSK 159
            GNLIDDDL+ +L+ GL+ N TI+ LD SHNKI+N GAR ++K
Sbjct:  254 GNLIDDDLISILIKGLMLNKTISQLDFSHNKISNSGARKIAK 295
[Close]
BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Match: A0A8J8NDT2_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NDT2_HALGN)

HSP 1 Score: 54.7 bits (130), Expect = 5.720e-7
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   34 GNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLL 153
            GNLIDDDL+ +L+ GL+ N TI+ LD+SHNKI+N GAR L
Sbjct:  247 GNLIDDDLISILIKGLMLNKTISQLDLSHNKISNSGARKL 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig867.16812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A482UXY9_9ARCH1.420e-1888.37Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2S000_9STRA5.270e-1782.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YNH4_AURAN5.090e-1562.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D8LCL7_ECTSI1.140e-1294.59Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z8G8_9STRA1.530e-1252.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3GG36_9EUKA2.010e-1160.00Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3LUM3_9EUKA3.420e-1160.00Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3GGA2_9EUKA3.420e-1160.00Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
J9IB95_9SPIT3.060e-761.90Flagellar associated protein n=1 Tax=Oxytricha tri... [more]
A0A8J8NDT2_HALGN5.720e-765.00Uncharacterized protein n=1 Tax=Halteria grandinel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig867contigS-dermatodea_contig867:23656..24708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog44056.XP_009041982.1
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.1092815-CDS-S-dermatodea_contig867:23655..237291622925358.1092815-CDS-S-dermatodea_contig867:23655..23729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig867 23656..23729 -
1694079879.1398215-CDS-S-dermatodea_contig867:23655..237291694079879.1398215-CDS-S-dermatodea_contig867:23655..23729Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig867 23656..23729 -
1622925358.1205149-CDS-S-dermatodea_contig867:24569..247081622925358.1205149-CDS-S-dermatodea_contig867:24569..24708Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig867 24570..24708 -
1694079879.1518185-CDS-S-dermatodea_contig867:24569..247081694079879.1518185-CDS-S-dermatodea_contig867:24569..24708Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig867 24570..24708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig867.16812.1prot_S-dermatodea_contig867.16812.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig867 23656..24708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig867.16812.1

>prot_S-dermatodea_contig867.16812.1 ID=prot_S-dermatodea_contig867.16812.1|Name=mRNA_S-dermatodea_contig867.16812.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
DFDSSSRLLGQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARL
LSKLLGGNSVLTTLNLADNQV
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mRNA from alignment at S-dermatodea_contig867:23656..24708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig867.16812.1 ID=mRNA_S-dermatodea_contig867.16812.1|Name=mRNA_S-dermatodea_contig867.16812.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1053bp|location=Sequence derived from alignment at S-dermatodea_contig867:23656..24708- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATTTTGACTCGTCATCTCGCTTGCTTGGGCAGGGCAACCTAATCGACGA
CGACTTGATGCGAATGCTCATGACGGGCCTCATCAGGAACTCCACTATCA
CTTACCTCGACGTGAGCCACAACAAGATCACAAACCACGGTGAGTTTCCG
TGCGAGCCACTCAGTATTCGAAAGTAAAACCAATGGCGTTGGGAGAGTAG
AGTGGGGTGATTCAGCAGGACGTTTGTCTGCATTGGAATTAGTGGTTCGG
GGAGGCAAATTCCCCCACAGGCATTTAATTTATTACGTCTACAACGAACA
AGGGAGGAACGCTGTACTGAGGGTTACGCCTTTAGCGAGGTGACGTTGGT
AGGTTTTTGTGGCAGACCAACTCGGCCGATCTCGCCACTGGTGTCCGATC
GTACCGTTTTACTAAAACATACACACTTGCTGGCGTAGTGGGTCACCGGC
ATTTTTTATATTCCTCTTTCACTTCTTGTGCTCACAAGCAAGACTCGGTC
ATACATGAGCCTTCGCTTTGTCTCGGTGGCTTCCCCCCCCTCCTTTCACA
CCCGATTACTGGGGCTGTACGGCAGTGCGCCTCTGCTGTTGCTTGTAGGC
CACCTGTGGCAATTTTTGGTAACTCATTCCGTGGTATTTGAACTTTTCTT
CGCCCCGTCCATTCTTAACCTATATCGAATCATTTGGTGTGTGATCTGCG
GTCAGTCATCCTTCTCGTGCCTTCGTCTTCAACTCGAACTTTAGCGCGCA
CCATTTCCACTGCTTCCATTGGAAACGATGACGCCACGTCGTTCGCAGAG
AGGCAGGACGTAAACGAAAGAACGTGCGTGCGGCCCCCGCCGCCGCCGCC
GCCGCCACACCTCTCTCCTCTTCCTCCAGGATCTGTGGTATTTTCCCGCT
CATCATTTCAGTGGGCATTGTGGTCACCTAAATTCGCCCCACATGCGCAT
ACCTCGGTCTTGTTCGTTCGTGGCACCAGGCGCGCGTTTGCTCTCAAAGC
TCTTGGGGGGAAACAGCGTCCTGACCACTCTCAACTTGGCGGACAACCAG
GTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig867:23656..24708-

>mRNA_S-dermatodea_contig867.16812.1 ID=mRNA_S-dermatodea_contig867.16812.1|Name=mRNA_S-dermatodea_contig867.16812.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig867:23656..24708- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATTTTGACTCGTCATCTCGCTTGCTTGGGCAGGGCAACCTAATCGACGA
CGACTTGATGCGAATGCTCATGACGGGCCTCATCAGGAACTCCACTATCA
CTTACCTCGACGTGAGCCACAACAAGATCACAAACCACGGATTTTGACTC
GTCATCTCGCTTGCTTGGGCAGGGCAACCTAATCGACGACGACTTGATGC
GAATGCTCATGACGGGCCTCATCAGGAACTCCACTATCACTTACCTCGAC
GTGAGCCACAACAAGATCACAAACCACGGCGCGCGTTTGCTCTCAAAGCT
CTTGGGGGGAAACAGCGTCCTGACCACTCTCAACTTGGCGGACAACCAGG
TGGCGCGCGTTTGCTCTCAAAGCTCTTGGGGGGAAACAGCGTCCTGACCA
CTCTCAACTTGGCGGACAACCAGGTG
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