mRNA_S-dermatodea_contig8624.16771.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8624.16771.1
Unique NamemRNA_S-dermatodea_contig8624.16771.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: A0A6H5L2M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.130e-12
Identity = 52/124 (41.94%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:    1 GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGATDA---LKGPARSD-PECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 357
            GD   DAA R  + SC L+V N C +  PLALAI GA  A    +G  R + P C      H      T          +F +V+EL    L    T+DCF+ L VLA  TVAPLDML+NLW+Q
Sbjct:  452 GDPGVDAATRASIESCALQVVNHCGEIAPLALAIVGAVVAGQDERGSRRDNSPPCDYAKRCHQIEQHVTRRQDCGDGYDAFSRVMELGFDALPGDKTKDCFVRLGVLAEGTVAPLDMLSNLWEQ 575
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BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: D7FNJ8_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.020e-12
Identity = 50/124 (40.32%), Postives = 60/124 (48.39%), Query Frame = 1 
Query:    1 GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGAT----DALKGPARSDPECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 357
            GD   DAA R    SC L+V N C +  PLALAI GA     D   G   + P C               +    G   +  +V+EL  G L    T+DCF+ L VLA  TVAPLDML+NLW Q
Sbjct:  479 GDPGVDAATRASFESCALQVVNDCGEIAPLALAIVGAVVAGQDERGGRRDNSPPCDYAERCRQIERQLIRDHDRCGDGYALSRVMELGFGALPGDKTKDCFVRLGVLAEGTVAPLDMLSNLWGQ 602
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BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: A0A6H5KWN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.660e-10
Identity = 50/124 (40.32%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:    1 GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGATDALK---GPARSD-PECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 357
            GD  A+A+ R    SC L+V N C +  PLALAI GA  A +   G  R + P C             T          +F +V+EL    L    T+DCF+ L VLA  TVAPLDML+NLW+Q
Sbjct:  494 GDPGANASTRASFESCALQVVNHCGEIAPLALAIVGAVIAGQDETGDRRDNSPPCNYAERCRRIERRITRHQDCGDGYDAFSRVIELGFNALPGDKTKDCFVRLGVLAEGTVAPLDMLSNLWEQ 617
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BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-9
Identity = 47/120 (39.17%), Postives = 58/120 (48.33%), Query Frame = 1 
Query:   13 ADAAARTPLVSCVLKVANCCCDSLPLALAITGAT----DALKGPARSDPECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 357
            A+A+ R    SC L+V N C +  PLALAI GA     D   G   +   C             T          +F +V+EL  G L    T+DCF+ L VLA  TVAPLDML+NLW Q
Sbjct:  497 ANASTRASFESCALQVVNHCREVAPLALAIVGAVIAGQDERGGRRDNSLSCDYAERCRQIERQVTRHQDCGDGYDAFNRVMELGFGALPGDKTKDCFIRLGVLAEGTVAPLDMLSNLWGQ 616
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2M9_9PHAE2.130e-1241.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNJ8_ECTSI4.020e-1240.32Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5KWN2_9PHAE1.660e-1040.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNJ7_ECTSI2.020e-939.17Armadillo/beta-catenin repeat family protein / U-b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8624contigS-dermatodea_contig8624:3497..5300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D7FNJ8
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.6375513-CDS-S-dermatodea_contig8624:3496..37961622925355.6375513-CDS-S-dermatodea_contig8624:3496..3796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8624 3497..3796 -
1694079877.6888294-CDS-S-dermatodea_contig8624:3496..37961694079877.6888294-CDS-S-dermatodea_contig8624:3496..3796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8624 3497..3796 -
1622925355.6516929-CDS-S-dermatodea_contig8624:5243..53001622925355.6516929-CDS-S-dermatodea_contig8624:5243..5300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8624 5244..5300 -
1694079877.7081735-CDS-S-dermatodea_contig8624:5243..53001694079877.7081735-CDS-S-dermatodea_contig8624:5243..5300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8624 5244..5300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8624.16771.1prot_S-dermatodea_contig8624.16771.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8624 3497..5300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8624.16771.1

>prot_S-dermatodea_contig8624.16771.1 ID=prot_S-dermatodea_contig8624.16771.1|Name=mRNA_S-dermatodea_contig8624.16771.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGATDALKGPARSDPE
CWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRTTRDCFLSLA
VLAAETVAPLDMLANLWDQ
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mRNA from alignment at S-dermatodea_contig8624:3497..5300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8624.16771.1 ID=mRNA_S-dermatodea_contig8624.16771.1|Name=mRNA_S-dermatodea_contig8624.16771.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1804bp|location=Sequence derived from alignment at S-dermatodea_contig8624:3497..5300- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGACTGTGATGCTGATGCCGCTGCTCGGACACCTCTCGTGTCGTGCGT
GCTCAAGGTGCGCGCTTGTTTTGTTGTTCTTGTTTTGCTTCGCGCGTCGA
CCATATGTATACCCAGGGGGCAGTTCGTGTACTGTAGTGTGTGTGCGTCG
TTTTTTTTCTCCAGACATCAAACCTCCCCCCCTCGATGCCCACGCCGCAC
CTCAGAGTTCNNNNNNNNNNTTTTTTTTGTTTGTTTTTGTTTTGGGGGTC
CTCTTTTTGTTTCCCCGGGGGGCGTTTCTTTTCTTTTGGGGTGTGTGCTT
TTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAT
TTTACGCCCTAAAAGTTGTTGCTCCCTCCGTGTGGCGAGTACGCTTCTGC
TACTGCTACTGCTACTGCTACTACTACTGCTACTGCTACTGCTACTGCTA
CTGCTACTGCCACTGCTGTCTGTTGTTGCTGGTGCTGGTGCTGCTGCGTT
TTTTTGTTTTTTTTTGTGCCGGGCTGTGACGGGCAACAGCAGCAGCACCG
CCCGACGAACGATTATAATACGCGCCGCGGGGAGCGAGTGTATCATAGAG
GGGCACAACTTCGTTTTTCCTTGCCGCGCTCCTCATGAGCACGACCCTAC
TCTTTGCGATCGGTGGCTGCCTGCGGTAGTTGTTTGGACCGGCCGCGTTG
GCTGCTTGGCGAGACGGCAGCTTCGGGGCGAGCACCGTTAAGAATATCAG
AGAGCTCTGCAATACTTTTAGAAAGTATCGCACATGCGTTAATTGTATTG
TATGTATAATAGTCCAGTGTCAAAACGCTGACAAGTCACAAGAATGCTTT
ATCTGAAGAAAAGAAACAAAAACAACAATTCGAAGAAACGAGCGAGGGTG
TGCATATATGATACCAGTACTCACCAGGAACACACTTTTAACACGCGGTC
TTGATTCACCCTTTCGGGAGTGTACTGAGCGAAGGACAAATATCGAGCCA
AGGAAGAAAAAAAAAACACACACACACACACAAGCACACACATACACACA
CACAGGCAGAAGTACAAGTAGCCTAACAAACCCCCCTCCTTCCCTCGCAC
TTGCGACAAGTATGTACTGTACAAAATAGCAAAAGGTTGAGGGTCGGTCG
ACGAACAGAGCCCGAAGCTAACCAACCGTCCTACTACTGTTTTATTCCAA
ACGCACACGCACAGCACACACACACACACACACACACACACAACCGAATG
TCCGTCCGTCCATCTGGATACGACATGCGTTTGACATAAGTACCCCCCCC
CCGCCCCCCTAGGGAACAAGGCCACCGTTCTCCCGAGGACGCTTGGCCAA
TGGCCTATCAAGTGAGGCATGCCAAACTTGAGCCCCCCCACCCCCACCCC
TACCCAACCAACCCTACCCCACCTGACCCCACCCAACCCAACCCCGCCCA
ACCTCACCCAACACGCTCCCTCAATTCCCCGTCCCGTTCAATTTTTACGA
ACAGGTTGCCAACTGCTGCTGCGACTCCCTCCCGCTGGCCCTGGCAATCA
CTGGCGCGACCGATGCTCTGAAGGGACCGGCCCGTAGCGACCCGGAGTGT
TGGAAAGGGATGCACGATCACCTTGGGCTGCCCTTGTGGACCGAGGAGGG
TCCGTCCCTCGGGCGTGCGAGCAGCTTCGGCAAAGTGGTGGAGCTGAGTC
TTGGGGAGCTCGACAGGACGACGAGGGATTGCTTCCTGAGCCTGGCGGTG
CTCGCGGCAGAGACGGTGGCTCCGTTGGACATGCTCGCGAACCTTTGGGA
CCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8624:3497..5300-

>mRNA_S-dermatodea_contig8624.16771.1 ID=mRNA_S-dermatodea_contig8624.16771.1|Name=mRNA_S-dermatodea_contig8624.16771.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig8624:3497..5300- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGACTGTGATGCTGATGCCGCTGCTCGGACACCTCTCGTGTCGTGCGT
GCTCAAGGGAGACTGTGATGCTGATGCCGCTGCTCGGACACCTCTCGTGT
CGTGCGTGCTCAAGGTTGCCAACTGCTGCTGCGACTCCCTCCCGCTGGCC
CTGGCAATCACTGGCGCGACCGATGCTCTGAAGGGACCGGCCCGTAGCGA
CCCGGAGTGTTGGAAAGGGATGCACGATCACCTTGGGCTGCCCTTGTGGA
CCGAGGAGGGTCCGTCCCTCGGGCGTGCGAGCAGCTTCGGCAAAGTGGTG
GAGCTGAGTCTTGGGGAGCTCGACAGGACGACGAGGGATTGCTTCCTGAG
CCTGGCGGTGCTCGCGGCAGAGACGGTGGCTCCGTTGGACATGCTCGCGA
ACCTTTGGGACCAGGTTGCCAACTGCTGCTGCGACTCCCTCCCGCTGGCC
CTGGCAATCACTGGCGCGACCGATGCTCTGAAGGGACCGGCCCGTAGCGA
CCCGGAGTGTTGGAAAGGGATGCACGATCACCTTGGGCTGCCCTTGTGGA
CCGAGGAGGGTCCGTCCCTCGGGCGTGCGAGCAGCTTCGGCAAAGTGGTG
GAGCTGAGTCTTGGGGAGCTCGACAGGACGACGAGGGATTGCTTCCTGAG
CCTGGCGGTGCTCGCGGCAGAGACGGTGGCTCCGTTGGACATGCTCGCGA
ACCTTTGGGACCAG
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