prot_S-dermatodea_contig8624.16771.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8624.16771.1
Unique Nameprot_S-dermatodea_contig8624.16771.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length119
Homology
BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: A0A6H5L2M9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.130e-12
Identity = 52/124 (41.94%), Postives = 64/124 (51.61%), Query Frame = 0
Query:    1 GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGATDA---LKGPARSD-PECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 119
            GD   DAA R  + SC L+V N C +  PLALAI GA  A    +G  R + P C      H      T          +F +V+EL    L    T+DCF+ L VLA  TVAPLDML+NLW+Q
Sbjct:  452 GDPGVDAATRASIESCALQVVNHCGEIAPLALAIVGAVVAGQDERGSRRDNSPPCDYAKRCHQIEQHVTRRQDCGDGYDAFSRVMELGFDALPGDKTKDCFVRLGVLAEGTVAPLDMLSNLWEQ 575          
BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: D7FNJ8_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.020e-12
Identity = 50/124 (40.32%), Postives = 60/124 (48.39%), Query Frame = 0
Query:    1 GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGAT----DALKGPARSDPECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 119
            GD   DAA R    SC L+V N C +  PLALAI GA     D   G   + P C               +    G   +  +V+EL  G L    T+DCF+ L VLA  TVAPLDML+NLW Q
Sbjct:  479 GDPGVDAATRASFESCALQVVNDCGEIAPLALAIVGAVVAGQDERGGRRDNSPPCDYAERCRQIERQLIRDHDRCGDGYALSRVMELGFGALPGDKTKDCFVRLGVLAEGTVAPLDMLSNLWGQ 602          
BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: A0A6H5KWN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.660e-10
Identity = 50/124 (40.32%), Postives = 63/124 (50.81%), Query Frame = 0
Query:    1 GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGATDALK---GPARSD-PECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 119
            GD  A+A+ R    SC L+V N C +  PLALAI GA  A +   G  R + P C             T          +F +V+EL    L    T+DCF+ L VLA  TVAPLDML+NLW+Q
Sbjct:  494 GDPGANASTRASFESCALQVVNHCGEIAPLALAIVGAVIAGQDETGDRRDNSPPCNYAERCRRIERRITRHQDCGDGYDAFSRVIELGFNALPGDKTKDCFVRLGVLAEGTVAPLDMLSNLWEQ 617          
BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-9
Identity = 47/120 (39.17%), Postives = 58/120 (48.33%), Query Frame = 0
Query:    5 ADAAARTPLVSCVLKVANCCCDSLPLALAITGAT----DALKGPARSDPECWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRT-TRDCFLSLAVLAAETVAPLDMLANLWDQ 119
            A+A+ R    SC L+V N C +  PLALAI GA     D   G   +   C             T          +F +V+EL  G L    T+DCF+ L VLA  TVAPLDML+NLW Q
Sbjct:  497 ANASTRASFESCALQVVNHCREVAPLALAIVGAVIAGQDERGGRRDNSLSCDYAERCRQIERQVTRHQDCGDGYDAFNRVMELGFGALPGDKTKDCFIRLGVLAEGTVAPLDMLSNLWGQ 616          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8624.16771.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2M9_9PHAE2.130e-1241.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNJ8_ECTSI4.020e-1240.32Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5KWN2_9PHAE1.660e-1040.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNJ7_ECTSI2.020e-939.17Armadillo/beta-catenin repeat family protein / U-b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8624contigS-dermatodea_contig8624:3497..5300 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8624.16771.1mRNA_S-dermatodea_contig8624.16771.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8624 3497..5300 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8624.16771.1 ID=prot_S-dermatodea_contig8624.16771.1|Name=mRNA_S-dermatodea_contig8624.16771.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
GDCDADAAARTPLVSCVLKVANCCCDSLPLALAITGATDALKGPARSDPE
CWKGMHDHLGLPLWTEEGPSLGRASSFGKVVELSLGELDRTTRDCFLSLA
VLAAETVAPLDMLANLWDQ
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