prot_S-dermatodea_contig8614.16764.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8614.16764.1
Unique Nameprot_S-dermatodea_contig8614.16764.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length282
Homology
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 3.440e-86
Identity = 152/284 (53.52%), Postives = 201/284 (70.77%), Query Frame = 0
Query:    1 MNTVIEGGKNNKQTTRLQRLQGMTTKETASEVALRA-CFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKG-TVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLLICSCWKPEACRDG--GRRGGARGKGRKTLPEEEQEELGADGEKLAVGPAAVSVAQEVSMEAMKKPFRAMYDERRRLVTPEFMDKYVPKGVTLETLQPVL 280
            MNT+IEGG+++K T +LQ+LQGM  KE+ASE AL+   F +VRE  + LGL  ++QE ACLLLR+AED GLFK KK  RG A+C AVT +TCR W   +TM+++S   ++SL+ +NKA K L  NL +++  ++RG H IP LC KL +PPF+ +AA+H AQQAS  DLV GM P+ VAAAAVLL+CSCW P AC DG   RR     K RKT   ++Q++   +GE   V PAAVS A   ++ AMK+PFRAMY++R RL T EF+++   K VTLETL+P+L
Sbjct:   80 MNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKL-SNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGDGVVDRRSK---KARKT---QQQQQAAVEGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPIL 356          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A520K3T5_9EURY (Transcription initiation factor IIB n=1 Tax=Methanophagales archaeon ANME-1-THS TaxID=2491082 RepID=A0A520K3T5_9EURY)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-15
Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 0
Query:   18 QRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLLICS 186
            +R+ G+ + ++ SE  L      +  +A  LGLP++I+E A LL R+A    L K +     + + +AV YITCR +GV RT+++++    + L+ + +A   L KNL L       TH IP+ C +L +       A  + ++   +    G GP G AAAA+ L  +
Sbjct:   84 KRMHGLISMDS-SEKTLSFALGEIDRMASALGLPTNIKEAASLLYRKAVKQNLIKGRSI---EELGSAVLYITCRQYGVPRTLKEVAAVSRMPLKKIRRAYIFLLKNLELRLTPPDPTHYIPRFCSELGLSDATRERAIALMRETRNMAAAKGWGPTGTAAAAIYLAAN 248          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A2V3JLQ8_9EURY (Transcription initiation factor IIB n=2 Tax=Methanomicrobia TaxID=224756 RepID=A0A2V3JLQ8_9EURY)

HSP 1 Score: 81.3 bits (199), Expect = 4.040e-14
Identity = 47/168 (27.98%), Postives = 89/168 (52.98%), Query Frame = 0
Query:   16 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            +L++ Q  T     +E +     + +  ++  L LP SI+E A +L R+A    L + +     + + +A+ YITCR +GV RT+ ++ +   +S +++++A + L + L+L          +P+ C  L +   I   A  + ++ASE +L  G GP G+AAAA+ +
Sbjct:  104 KLKKWQQRTHIANTTERSFIFALSEIERMSSALKLPVSIREAASMLYRKAMKKHLIRGRSI---EGITSAILYITCRQYGVPRTLEEVREVSRVSQKEISRAYRFLLRELDLKISPASPIDFVPRFCSMLGLGGDIRAKAIEIIKKASEKELTNGRGPIGIAAAAIYI 268          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A843ECA6_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Methanomethylophilus sp. TaxID=2774294 RepID=A0A843ECA6_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 1.060e-13
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = 0
Query:   24 TTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            T +  ++E  L    + +  +A   GLP S+++ A L+ R A +  L K +       + AA  Y +CR  G+ RT+ ++++  ++  R++ +  +HL K L L     R    I + C  L +   +   A  + ++ASE DL+ G+GPAGV AAAV +
Sbjct:   62 TRRTESAERNLAFALSEIDRVATANGLPRSVRDSAGLVYRSAVERNLVKGRPID---VLAAASVYCSCRISGIPRTLDEIAENANIGRRELGRTYRHLSKELGLGLSPARPQDYIGRYCDALKLGTEVRERALSLIRKASENDLLSGLGPAGVTAAAVYI 218          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A662RQX3_9EURY (Transcription initiation factor IIB n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A662RQX3_9EURY)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-13
Identity = 51/183 (27.87%), Postives = 94/183 (51.37%), Query Frame = 0
Query:    1 MNTVIEGGKNNKQTTRLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            ++TV+  G    Q  RL++ Q  T     +E +     + +  +A  L LP +I+E A +L R+A    L + +     + + +A+ YITCR +GV RT+ ++ +   +  +++++A + L + LNL          +P+ C  L +   I   A  +  +A+E +L  G GP G+AAAA+ +
Sbjct:   94 LSTVVTWGPQG-QGQRLKKWQQRTHIANTTERSFIFALSEIDRMACALRLPVNIREAASMLYRKAMKKRLIRGRSI---EGITSALLYITCRQYGVPRTLEEVREISRVGQKEISRAYRFLLRELNLKISPTSPVDFVPRFCSLLGLGSDIRAKAIEIINKATEAELTNGRGPIGIAAAAIYI 272          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A843DR40_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Methanomethylophilus sp. TaxID=2774294 RepID=A0A843DR40_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.090e-13
Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = 0
Query:   29 ASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            ++E  L    + +  +A   GLP S+++ A L+ R A +  L K +       + AA  Y +CR  G+ RT+ ++++  ++  R++ +  +HL K L L     R    I + C  L +   +   A  + ++ASE DL+ G+GPAGV AAAV +
Sbjct:   11 SAERNLAFALSEIDRVATANGLPRSVRDSAGLVYRSAVERNLVKGRPID---VLAAASVYCSCRISGIPRTLDEIAENANIGRRELGRTYRHLSKELGLGLSPARPQDYIGRYCDALKLGTEVRERALSLIRKASENDLLSGLGPAGVTAAAVYI 162          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A256ZBK9_9ARCH (Transcription initiation factor IIB n=1 Tax=Candidatus Bathyarchaeota archaeon ex4484_231 TaxID=2012512 RepID=A0A256ZBK9_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-13
Identity = 51/165 (30.91%), Postives = 86/165 (52.12%), Query Frame = 0
Query:   16 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAA 180
            RL++ Q       A E  L    + + +IA+ L LP SI E A ++ R+A  + L + +     + + AA  YI CR  G++RT+ ++SKA ++S R+V ++ + L K L+     V+    + +   +L++   +   A  +   AS L L  G GP G+AAAA
Sbjct:  109 RLRKWQRRIRVSDAMERNLAFALSEITKIANNLSLPKSIFETASVIYRKAVKERLIRGRSI---QGISAASVYIACRQCGLARTLEEISKASNVSKREVGRSYRFLVKELDYFIPPVKANQYVSKFSNQLTMQGKVEEIANKILTTASNLKLTSGRGPTGIAAAA 270          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A842XII8_9EURY (Transcription initiation factor IIB n=1 Tax=Methanophagales archaeon TaxID=2056316 RepID=A0A842XII8_9EURY)

HSP 1 Score: 78.6 bits (192), Expect = 3.220e-13
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 0
Query:   18 QRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            +RL+G+ + ++ SE  L      +  +A  L LP+ I+E A LL R+A    L K +     + + +AV YITCR +GV RT++++++   + L+ + +A   LFK L +          IP+ C +L +       A  + ++        G GP G AAAA+ L
Sbjct:   84 KRLRGIISMDS-SEKTLAFALGEIDRMASALKLPNDIKEAASLLYRKAVKHNLIKGRSI---EELGSAVLYITCRQYGVPRTLKEIAQVSRMPLKKIRRAYIFLFKKLEIKLAPADPARYIPRFCSELGLSDATRERAIKIMREGRGTAAAKGWGPTGTAAAAIYL 245          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: Q649S4_9ARCH (Transcription initiation factor IIB n=8 Tax=Archaea TaxID=2157 RepID=Q649S4_9ARCH)

HSP 1 Score: 78.6 bits (192), Expect = 3.510e-13
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 0
Query:   16 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            R +RL+G++    +S+  L      +  +A  LGLP++I+E   +L R+A   GL K +     + + +A+ YITCR +GV RT++++++     L+ + +A   L + L +          IP+ C KL +   I   A  + Q      +  G GP G AAAA+ +
Sbjct:   89 RTRRLRGISI--DSSDKTLAFALVEIDRMACALGLPNNIKEATSVLYRKAMKRGLIKGRSI---EELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLLRRLEIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTAAAAIYI 251          
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A520K523_9EURY (Transcription initiation factor IIB (Fragment) n=1 Tax=Methanophagales archaeon ANME-1-THS TaxID=2491082 RepID=A0A520K523_9EURY)

HSP 1 Score: 75.5 bits (184), Expect = 1.280e-12
Identity = 43/168 (25.60%), Postives = 86/168 (51.19%), Query Frame = 0
Query:   16 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 183
            +L++ Q  T     +E +     + +  +A  L LP +I+E A +L R+A    L + +     + +  A+ YITCR +GV RT+ ++     +  +++++A + L + L+L          +P+ C  L++   +   A  + + A++ +L  G GP G+AAAA+ +
Sbjct:   10 KLKKWQQRTHIANTTERSFIFALSEIDRMACALKLPMNIREAASMLYRKAMKKRLIRGRSI---EGIATAILYITCRQYGVPRTLEEVRDISRVGQKEISRAYRFLLRELDLKVSPASPVDFVPRFCSLLNLTSDVRAKAIEIIKHAADNELTNGRGPIGIAAAAIYI 174          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE3.440e-8653.52TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A520K3T5_9EURY1.130e-1531.36Transcription initiation factor IIB n=1 Tax=Methan... [more]
A0A2V3JLQ8_9EURY4.040e-1427.98Transcription initiation factor IIB n=2 Tax=Methan... [more]
A0A843ECA6_9ARCH1.060e-1330.00Uncharacterized protein n=1 Tax=Candidatus Methano... [more]
A0A662RQX3_9EURY1.090e-1327.87Transcription initiation factor IIB n=1 Tax=Methan... [more]
A0A843DR40_9ARCH1.090e-1330.32Uncharacterized protein n=1 Tax=Candidatus Methano... [more]
A0A256ZBK9_9ARCH1.500e-1330.91Transcription initiation factor IIB n=1 Tax=Candid... [more]
A0A842XII8_9EURY3.220e-1330.12Transcription initiation factor IIB n=1 Tax=Methan... [more]
Q649S4_9ARCH3.510e-1329.17Transcription initiation factor IIB n=8 Tax=Archae... [more]
A0A520K523_9EURY1.280e-1225.60Transcription initiation factor IIB (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 84..103
score: 41.0
coord: 171..187
score: 34.51
coord: 110..125
score: 17.92
coord: 137..155
score: 22.11
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 3..189
NoneNo IPR availableGENE3D1.10.472.10coord: 10..126
e-value: 1.5E-21
score: 78.5
NoneNo IPR availableGENE3D1.10.472.10coord: 134..269
e-value: 7.6E-9
score: 37.6
NoneNo IPR availablePANTHERPTHR11618:SF13TRANSCRIPTION INITIATION FACTOR IIBcoord: 3..189
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 39..128
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 132..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8614contigS-dermatodea_contig8614:6246..7649 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8614.16764.1mRNA_S-dermatodea_contig8614.16764.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8614 4801..7688 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8614.16764.1 ID=prot_S-dermatodea_contig8614.16764.1|Name=mRNA_S-dermatodea_contig8614.16764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=282bp
MNTVIEGGKNNKQTTRLQRLQGMTTKETASEVALRACFARVREIAHGLGL
PSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTM
RDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPF
ICIAAQHVAQQASELDLVGGMGPAGVAAAAVLLICSCWKPEACRDGGRRG
GARGKGRKTLPEEEQEELGADGEKLAVGPAAVSVAQEVSMEAMKKPFRAM
YDERRRLVTPEFMDKYVPKGVTLETLQPVLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR036915Cyclin-like_sf