mRNA_S-dermatodea_contig8587.16745.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8587.16745.1
Unique NamemRNA_S-dermatodea_contig8587.16745.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.740e-75
Identity = 168/396 (42.42%), Postives = 225/396 (56.82%), Query Frame = 3
Query:  453 LARALVTRYTKSTQMTMRL*DTCRTINIVSLRVIQDVETRWWSTLCMTERLVYLRRAIEIHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLE-SEPVSGRLVVPLIADLRGSWQMEKEELDKIS--AAHAIDPKARDALLPCVEALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAASAARPSVAPSAT--ASRPV---PAARSGAAGIESGARSSSPSQAQAATATPARTTTSLPPDHFLRE-----AEGEVDAYRQVQG---WAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSSAGHIIPKTRNKVSSETVELLVGLKTPWEVVEAFN 1592
            LAR LV RY KS+QM  RL   C  + +  L V+QDVETRWWST  M  RL+YL +AI++HE++D +  LL   DW VL L+ P+L PF   QK LE ++ V+G + +  +A+LR   +    +L  ++         KA +A+ P  EAL  DF NRWGDG++++E REG RRQPQGF+++QV ATALD R   LYG+   E  GVW+AVA AA DI     A      SA   AS PV   PA   G  G     R S+   A A                  RE      + EV A++   G   W +++       V++NPL   R+   ++PLLAALARR+LAIP+SQ QSERVFS+AG  +  TR+++  E VELLV L+  W VV+ + 
Sbjct:  159 LARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWK 554          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 2.850e-62
Identity = 152/355 (42.82%), Postives = 206/355 (58.03%), Query Frame = 3
Query:  456 ARALVTRYTKSTQMTMRL*DTCRTINIVSLRVIQDVETRWWSTLCMTERLVYLRRAIEIHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLE-SEPVSGRLVVPLIADLRGSWQMEKEEL---DKISAAHAIDPKARDALLPCVEALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAA--SAARPSVAPSATASRPV--PAARSGAAGIESGARSSSPSQAQAATATPART-----TTSLPPDHFLREAEGEVDAYRQVQGWAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERV 1481
            ARA+V RY +S+QM+ RL      + +  L V+QDVETRWWS+  M ERL+YL +AI++HE+ D I  +L   DW VL L+ P+L PF   QK LE ++ V+G + VP I +LR   +    +L   D+   + A   +A +A+LP  EAL  DF NRWGDG+ ++E REG RRQPQGF+ +QV ATA+D R   LYG+   E   VW+AVA  A DI A   S+   + + SA A++PV  P    G  G    AR S+   A AA A  A +     T     +      + EV +++   G +I      G  VY++PL W R    +FP LAALARR+LAIP+SQ  SERV
Sbjct:  196 ARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGIS-ASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.800e-57
Identity = 159/443 (35.89%), Postives = 215/443 (48.53%), Query Frame = 3
Query:  447 MVLARALVTRYTKSTQMTMRL*DTCRTINIVSLRVIQDVETRWWSTLCMTERLVYLRRAIEIHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLE-SEPVSGRLVVPLIADLRGSWQMEKEELDKISA-AHAIDPKARDALLPCVEALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAASAARPS---------------------------------------------VAPSATASRPVPAARSGAAGIESG------------------ARSSSPSQAQAATATPARTTTSLPPDHFLREAEGEVDAYRQVQGWAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSSAGHIIPKTRNKVSSETVELLVGLK-TPWEV 1577
            + LAR +VTRYT S+Q + RL   C  + +    V+QDVETRWWST     RL+ LRR I  HE +D  P LL+  DW VL+L+  +L+PF   QK LE S+ V+ RLV P IADL+       E L   S  A +I  +A+  ++ C +AL+ D   RWGD TDV+   EGPRRQP+GF+KEQV+ATAL  R+  LYG+   E   VW A A  A  +   + A                                                   +  +S P+P        +E                    A       A A+++   R   S+           EVDA++   G A+   ++ G  V   PL W R  AR++P LA+LARR+L IPA Q QSERVFSSAG ++ KTR ++  E V L+V L+ TP E+
Sbjct:  122 LALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIP--------VEPAXXXXXXXXXXXXXXXXXXAHGDKQQSANASSSPLRRQMESI--------ISREVDAFKITPGLAVS-WEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPPEL 547          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.650e-43
Identity = 96/219 (43.84%), Postives = 124/219 (56.62%), Query Frame = 3
Query:  447 MVLARALVTRYTKSTQMTMRL*DTCRTINIVSLRVIQDVETRWWSTLCMTERLVYLRRAIEIHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLE-SEPVSGRLVVPLIADLRGSWQMEKEELDKISA-AHAIDPKARDALLPCVEALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADI 1097
            + L R +VTRYT S+Q + RL   C  + +   +V+QDVETRWWST                   +D IP LL   DW VL+L+ P+L PF   QK LE S+ V+  LV   IADLR       E L   S  A +I  +A+  +L C  AL+ D   RW DGTDV+   EGPRRQP+GF+K+QV+ATALD R+  LYG+   E   VW+AVA  A  +
Sbjct:  110 LALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKV 312          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 8.740e-37
Identity = 126/384 (32.81%), Postives = 180/384 (46.88%), Query Frame = 3
Query:  447 MVLARALVTRYTKSTQMTMRL*DTCRTINIVSLRVIQDVETRWWSTLCMTERLVYLRRAIEIHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLE-SEPVSGRLVVPLIADLRGSWQMEKEELDKISAAHAIDPKARDALLPCVEALR-VDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAASAARPSVAPSATASRPVPAARSGAAGIESGARSSSPSQAQAATATPARTTTSLPPDHFLREAEGEVDAYRQVQGWAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSSAGHIIPKTRNKVSSETVELLVGLKTPWEVVEAFN 1592
            + LAR +VTRY  S+Q + RL      + +   +V+QDVETRWWST     RL+ LRR I  HE +D IP LL+  DW VL+++ P+ +PF L QK  E S+ V+  LV+P IADLR       +ELD+  A   +   A  A     EA + V F  +    T V+        +P+GF+K+QV+ATALD R+  LYG+   E   VW+AVA  A  +                             IE+ A   + S   +++  P                  +  A   V G                       + +Q    ++   R+L IPASQ QSERVFSSAG ++ KTR ++  E VEL++ L+     V+ +N
Sbjct:  166 LALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLR-------DELDE--AVERLQAHACPAESIVAEAKKDVFFAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVA----------------------------IEAKATEDTQSAGASSSLIPVEPAAXXXXXXXXX---XDFAAASAVPG-----------------------DKQQSANASSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRWN 479          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.570e-28
Identity = 96/257 (37.35%), Postives = 131/257 (50.97%), Query Frame = 3
Query:  903 DFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAASAARPSVAPSATASRPVPAARSGA---------------------------AGIESGARSSSPSQAQAATATPARTTTSLPPDHFLREAEGEVDAYRQVQGWAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSSAGHIIPKTRNKVSSETVELLVGLKTPWEVVEAFN 1592
            DF NRWGDG +++  +EG RRQP GF+  QV+ATALD RT +LYGV  +E+  VWK V + A  +K A   R S      +S+  P                                 A    GAR+  P   + A ++  R  TS            E+ A++   G  + E    G+ VY +PL W R     FP LA LARR+LAIPA+Q +SER+FS AG+I+ K RN ++  TVELLV L+  W++VE + 
Sbjct:   50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEA--VKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGART--PQLDEGADSSFVRLITSS--------VRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWE 294          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.970e-18
Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = 3
Query:  732 KKLESEPVSGRLVVPLIADLRGSWQMEKEELDKISA-AHAIDPKARDALLPCVEALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADI 1097
            K++  + V+G LVVP I DLR S +   ++L ++   + A    A  A++PC++ALR D+ +RWGDG +++  +EGPRRQP GF+   V+ATALD RT + YGV  +E+  VWK V + A  I
Sbjct:  191 KRVIQDVVTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKI 313          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.990e-18
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 3
Query:  861 ARDALLPCVEALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAV 1076
            AR A++PC++ALR DF NRWGDG +++  +EGPRRQP GF+  QV+ATALD RT +L+GV  +E+  VWK V
Sbjct:  158 ARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLV 229          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A409VL32_9AGAR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409VL32_9AGAR)

HSP 1 Score: 89.4 bits (220), Expect = 6.330e-15
Identity = 102/372 (27.42%), Postives = 155/372 (41.67%), Query Frame = 3
Query:  525 TINIVSLRVIQDVETRWWSTLCMTERLVYLRRAIE--IHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLESEPVSGRLVVPLIADLRGSWQMEKEELDKISAAHAIDPKARDA----LLP-------------CV--EALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAASAARPSVAPSATASRPVPAARSGAAGIESGARSSSPSQAQAAT------ATPARTTTSLPPDH----FLREAEGEVDAYRQVQGWAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSSAGHIIPKTRNKVSSETVEL 1547
            T ++ +L V++DV TRW  T+ M +R + LR+AIE    ET +    +L   DW  L+ +  +LEPF    K + +   S +  +P +     +W   + EL+K +A + +  K R+A    LL              C+    L     ++W      +   +  RR  +   +E V   A+         V A E        AQ AA                T + PVP         +   +SS PS A + +       TP  T T   PD        E E E++ Y   QG         G      PL+W ++NA  FP+LA +AR  LAIPA+    ERVFS + HI    R+ + +ET+ +
Sbjct:  712 TAHLAALMVVRDVATRWNFTVEMGKRGLMLRKAIEKWTFETPECRDMMLSSDDWDTLKKIVDLLEPFLYATKSMST---SSQPTIPFVLP---TWLSLRRELEKAAANNFLPQKIRNAASAGLLKLQKYESLAQRNQHCIIGTVLHPSLRSKWFGNQAPLGASDEERRPYESSAEEIVQHVAM---------VYAEEMREAKAQTAQTAA----------------TENPPVP---------QVLPKSSPPSLAASQSWLASICGTPFTTATPHTPDTPTLTIKEEVEEELNRYFSFQG---------GPAKLEEPLIWWKDNAAAFPILAKMARDFLAIPATSTPVERVFSKSRHICSDLRSSLKAETISM 1034          
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Match: A0A409YG47_9AGAR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409YG47_9AGAR)

HSP 1 Score: 85.1 bits (209), Expect = 2.170e-14
Identity = 99/366 (27.05%), Postives = 152/366 (41.53%), Query Frame = 3
Query:  549 VIQDVETRWWSTLCMTERLVYLRRAIE--IHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKLESEPVSGRLVVPLIADLRGSWQMEKEELDKISAAHAIDPKARDA----LLP-------------CV--EALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGVPANEREGVWKAVAQAAADIKAASAARPSVAPSATASRPVPAARSGAAGIESGARSSSPSQAQAATATPARTTTSLPPDH----FLREAEGEVDAYRQVQGWAIEELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSSAGHIIPKTRNKVSSETVELLVGLKTPW 1571
            V++DV TRW  T+ M +R + LR+AIE    ET +    +L   DW  L  +  +LEPF L  K + +   S +  +P +     +W   + EL+K +A   +  K R+A    LL              C+    L     ++W      +   +  RR  +   +E V   A      M+Y       E + +A AQ       A+   P   P +++   + A++S  A I                 TP  T T   PD        E E E+  Y   QG         G      PL+W ++NA  FP+LA +AR  LAIPA+    ERVFS + HI    R+ + +ET+ + +    P+
Sbjct:    2 VVRDVATRWNFTVEMGKRGLMLRKAIEKWTFETPECRDMMLSSDDWDTLAKIVDLLEPFLLATKSMST---SSQPTIPFVLP---TWLSLRRELEKAAANSFLPQKIRNAASAGLLKLQKYESLAQKNQHCIIGTVLHPSLRSKWFGNQAPLGASDEERRPYESSAEEIVQHVA------MVYA------EEMKEAKAQTXXXXXTANPPVPQALPKSSSPPSLAASQSWLASI---------------CGTPFTTETPHTPDTPTLTIKEEVEDELKRYFSFQG---------GPAKLEEPLIWWKDNAAAFPILAKMARDFLAIPATSTPVERVFSKSRHICSDLRSSLKAETISMALLSLQPY 325          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8587.16745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.740e-7542.42Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE2.850e-6242.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.800e-5735.89Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.650e-4343.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE8.740e-3732.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWI1_9PHAE6.570e-2837.35Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE1.970e-1843.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE8.990e-1858.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A409VL32_9AGAR6.330e-1527.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pa... [more]
A0A409YG47_9AGAR2.170e-1427.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8587contigS-dermatodea_contig8587:771..2407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue8.4e-57
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1595
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8587.16745.1prot_S-dermatodea_contig8587.16745.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8587 771..1817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.4689984-CDS-S-dermatodea_contig8587:770..11531622925353.4689984-CDS-S-dermatodea_contig8587:770..1153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8587 771..1153 -
1694079876.1677215-CDS-S-dermatodea_contig8587:770..11531694079876.1677215-CDS-S-dermatodea_contig8587:770..1153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8587 771..1153 -
1622925353.4806075-CDS-S-dermatodea_contig8587:1195..18171622925353.4806075-CDS-S-dermatodea_contig8587:1195..1817Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8587 1196..1817 -
1694079876.1796124-CDS-S-dermatodea_contig8587:1195..18171694079876.1796124-CDS-S-dermatodea_contig8587:1195..1817Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8587 1196..1817 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.492356-UTR-S-dermatodea_contig8587:1817..24071622925353.492356-UTR-S-dermatodea_contig8587:1817..2407Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8587 1818..2407 -
1694079876.189899-UTR-S-dermatodea_contig8587:1817..24071694079876.189899-UTR-S-dermatodea_contig8587:1817..2407Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8587 1818..2407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8587.16745.1

>prot_S-dermatodea_contig8587.16745.1 ID=prot_S-dermatodea_contig8587.16745.1|Name=mRNA_S-dermatodea_contig8587.16745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=335bp
MTERLVYLRRAIEIHETVDGIPSLLEPVDWRVLELLHPVLEPFSLVQKKL
ESEPVSGRLVVPLIADLRGSWQMEKEELDKISAAHAIDPKARDALLPCVE
ALRVDFENRWGDGTDVMELREGPRRQPQGFRKEQVMATALDARTNMLYGV
PANEREGVWKAVAQAAADIKAASAARPSVAPSATASRPVPAARSGAAGIE
SGARSSSPSQAQAATATPARTTTSLPPDHFLREAEGEVDAYRQVQGWAIE
ELQDHGSIVYSNPLVWGRENARQFPLLAALARRLLAIPASQVQSERVFSS
AGHIIPKTRNKVSSETVELLVGLKTPWEVVEAFN*
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mRNA from alignment at S-dermatodea_contig8587:771..2407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8587.16745.1 ID=mRNA_S-dermatodea_contig8587.16745.1|Name=mRNA_S-dermatodea_contig8587.16745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1637bp|location=Sequence derived from alignment at S-dermatodea_contig8587:771..2407- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCACATGCCGAACGCCAAAGCTCAGGTCCCTACACGCCGCATCGT CGTCTCACGGATGCGCGAAGTTCGCGCTGGCGCTGCGGCGACGATCGGCG ACATGCTGAAAGACCAGTGCGTCTCGATCACTACGGATGGGTGGACGTCG TGCGCCAACGAGTCCTACATGTCTTTCACCGTGGTGTTCATCAATGAGGT GTGGGAGATGGTGGTGCTGGCGCTCAGCTGCGAGAAGAAGGAAGGCCCGA CCAAACGGGAAGACATGGCGGAGGCTATCGAGGCCATGGTGAACAACCCC GGGCTCAAGGGGCGCCTGCGATCCTTCGATGGTGAAAGCTGGTCGCCTCC TCACCGAGCGCAATGTGTTCAAGCACATTGGGTGCGCGTGCCACCGACTT GAGTGCACTACGGCGCTCGTCTTCAACGACCCCGGGGTAAAATACCATGG TTCTGGCTCGCGCCTTGGTGACCCGCTACACCAAGTCCACGCAGATGACC ATGCGGCTCTAAGACACGTGCCGCACAATCAACATCGTCTCTCTAAGGGT AATCCAGGACGTGGAGACGCGATGGTGGTCGACTCTGTGCATGACGGAGC GCCTCGTGTACCTCCGCCGCGCCATCGAGATCCACGAGACCGTGGACGGC ATCCCTTCGCTGCTCGAGCCGGTGGACTGGCGCGTGTTGGAGCTACTGCA TCCTGTGCTAGAGCCGTTCAGCCTTGTCCAGAAGAAGCTGGAATCCGAAC CCGTGTCAGGGCGCTTGGTCGTGCCTCTCATCGCGGACCTCCGCGGCAGC TGGCAAATGGAGAAGGAGGAACTGGACAAAATTTCCGCTGCGCATGCGAT CGACCCCAAGGCGCGGGATGCTCTGCTTCCCTGCGTCGAGGCACTGCGTG TGGACTTCGAGAACCGCTGGGGTGATGGGACCGACGTCATGGAATTGCGC GAGGGTCCACGGCGCCAGCCACAGGGGTTTCGCAAGGAGCAGGTCATGGC GACCGCCCTCGATGCCCGAACCAATATGTTGTACGGCGTTCCCGCCAACG AGCGCGAGGGCGTTTGGAAGGCGGTTGCGCAGGCGGCCGCGGACATCAAA GCAGCGTCGGCGGCACGTCCTTCGGTGGCACCATCCGCGACAGCTTCTCG GCCAGTTCCTGCTGCTCGCTCTGGAGCAGCTGGGATCGAGAGTGGGGCCA GGTCATCTTCCCGTCCTGCTCGCAAAAGAAGATTCTGCGAAGGCTTCTTG TAAGCTTCTCAGGCGCAGGCTGCGACGGCGACCCCAGCACGCACCACGAC GTCTTTGCCGCCGGATCACTTCCTTCGTGAGGCAGAGGGTGAGGTGGACG CGTACCGGCAGGTACAGGGGTGGGCGATTGAAGAGCTTCAAGATCATGGA TCAATCGTCTACTCCAACCCCCTGGTTTGGGGGCGGGAGAACGCCCGCCA GTTCCCCCTGCTGGCGGCGCTTGCCCGGCGTTTGCTCGCTATCCCGGCGT CGCAGGTGCAGTCGGAACGCGTGTTTTCGAGTGCTGGGCACATCATCCCC AAGACGCGCAACAAAGTTTCTTCCGAAACCGTCGAGCTTCTCGTTGGATT GAAGACTCCGTGGGAGGTTGTGGAGGCTTTCAACTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8587:771..2407-

>mRNA_S-dermatodea_contig8587.16745.1 ID=mRNA_S-dermatodea_contig8587.16745.1|Name=mRNA_S-dermatodea_contig8587.16745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at S-dermatodea_contig8587:771..2407- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGAGCGCCTCGTGTACCTCCGCCGCGCCATCGAGATCCACGAGAC
CGTGGACGGCATCCCTTCGCTGCTCGAGCCGGTGGACTGGCGCGTGTTGG
AGCTACTGCATCCTGTGCTAGAGCCGTTCAGCCTTGTCCAGAAGAAGCTG
GAATCCGAACCCGTGTCAGGGCGCTTGGTCGTGCCTCTCATCGCGGACCT
CCGCGGCAGCTGGCAAATGGAGAAGGAGGAACTGGACAAAATTTCCGCTG
CGCATGCGATCGACCCCAAGGCGCGGGATGCTCTGCTTCCCTGCGTCGAG
GCACTGCGTGTGGACTTCGAGAACCGCTGGGGTGATGGGACCGACGTCAT
GGAATTGCGCGAGGGTCCACGGCGCCAGCCACAGGGGTTTCGCAAGGAGC
AGGTCATGGCGACCGCCCTCGATGCCCGAACCAATATGTTGTACGGCGTT
CCCGCCAACGAGCGCGAGGGCGTTTGGAAGGCGGTTGCGCAGGCGGCCGC
GGACATCAAAGCAGCGTCGGCGGCACGTCCTTCGGTGGCACCATCCGCGA
CAGCTTCTCGGCCAGTTCCTGCTGCTCGCTCTGGAGCAGCTGGGATCGAG
AGTGGGGCCAGGTCATCTTCCCATGACGGAGCGCCTCGTGTACCTCCGCC
GCGCCATCGAGATCCACGAGACCGTGGACGGCATCCCTTCGCTGCTCGAG
CCGGTGGACTGGCGCGTGTTGGAGCTACTGCATCCTGTGCTAGAGCCGTT
CAGCCTTGTCCAGAAGAAGCTGGAATCCGAACCCGTGTCAGGGCGCTTGG
TCGTGCCTCTCATCGCGGACCTCCGCGGCAGCTGGCAAATGGAGAAGGAG
GAACTGGACAAAATTTCCGCTGCGCATGCGATCGACCCCAAGGCGCGGGA
TGCTCTGCTTCCCTGCGTCGAGGCACTGCGTGTGGACTTCGAGAACCGCT
GGGGTGATGGGACCGACGTCATGGAATTGCGCGAGGGTCCACGGCGCCAG
CCACAGGGGTTTCGCAAGGAGCAGGTCATGGCGACCGCCCTCGATGCCCG
AACCAATATGTTGTACGGCGTTCCCGCCAACGAGCGCGAGGGCGTTTGGA
AGGCGGTTGCGCAGGCGGCCGCGGACATCAAAGCAGCGTCGGCGGCACGT
CCTTCGGTGGCACCATCCGCGACAGCTTCTCGGCCAGTTCCTGCTGCTCG
CTCTGGAGCAGCTGGGATCGAGAGTGGGGCCAGGTCATCTTCCCCTTCTC
AGGCGCAGGCTGCGACGGCGACCCCAGCACGCACCACGACGTCTTTGCCG
CCGGATCACTTCCTTCGTGAGGCAGAGGGTGAGGTGGACGCGTACCGGCA
GGTACAGGGGTGGGCGATTGAAGAGCTTCAAGATCATGGATCAATCGTCT
ACTCCAACCCCCTGGTTTGGGGGCGGGAGAACGCCCGCCAGTTCCCCCTG
CTGGCGGCGCTTGCCCGGCGTTTGCTCGCTATCCCGGCGTCGCAGGTGCA
GTCGGAACGCGTGTTTTCGAGTGCTGGGCACATCATCCCCAAGACGCGCA
ACAAAGTTTCTTCCGAAACCGTCGAGCTTCTCGTTGGATTGAAGACTCCG
TGGGAGGTTGTGGAGGCTTTCAACTAGCTTCTCAGGCGCAGGCTGCGACG
GCGACCCCAGCACGCACCACGACGTCTTTGCCGCCGGATCACTTCCTTCG
TGAGGCAGAGGGTGAGGTGGACGCGTACCGGCAGGTACAGGGGTGGGCGA
TTGAAGAGCTTCAAGATCATGGATCAATCGTCTACTCCAACCCCCTGGTT
TGGGGGCGGGAGAACGCCCGCCAGTTCCCCCTGCTGGCGGCGCTTGCCCG
GCGTTTGCTCGCTATCCCGGCGTCGCAGGTGCAGTCGGAACGCGTGTTTT
CGAGTGCTGGGCACATCATCCCCAAGACGCGCAACAAAGTTTCTTCCGAA
ACCGTCGAGCTTCTCGTTGGATTGAAGACTCCGTGGGAGGTTGTGGAGGC
TTTCAACTAG
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