mRNA_S-dermatodea_contig85749.16735.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85749.16735.1
Unique NamemRNA_S-dermatodea_contig85749.16735.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0H5B5W8_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Syringoderma abyssicola TaxID=217214 RepID=A0A0H5B5W8_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 3.040e-160
Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 1
Query:    4 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY GSIFLI LSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGH+VHVAIPESRGIHI W+NFLTTLPHP GL PFFDGNWN+YSQ
Sbjct:    1 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWTLNPLKVKPIAHTIWDPHFGQLAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYTGSIFLIGLSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHIVHVAIPESRGIHIRWNNFLTTLPHPSGLTPFFDGNWNVYSQ 216          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0H5B5V3_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0H5B5V3_9PHAE)

HSP 1 Score: 451 bits (1159), Expect = 8.170e-159
Identity = 203/217 (93.55%), Postives = 212/217 (97.70%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIW+GIATAHDFETHDGMTEENLYQKIFASHFGH+AIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG LAMKAFTKGGA +PVNI+Y+G+YHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRP+LSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTT PHPDGL PFFDGNWN+Y+Q
Sbjct:    1 RRIWYGIATAHDFETHDGMTEENLYQKIFASHFGHIAIIFLWTSGNLFHVAWQGNFEQWILNPLKVKPIAHTIWDPHFGSLAMKAFTKGGAIFPVNISYAGLYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPNLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTAPHPDGLTPFFDGNWNLYAQ 217          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A1Z4F594_9PHAE (Photosystem I (Fragment) n=38 Tax=Phaeophyceae TaxID=2870 RepID=A0A1Z4F594_9PHAE)

HSP 1 Score: 458 bits (1178), Expect = 4.120e-158
Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW+LNPLKVKPIAHTIWDPHFG+LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY+GSIFLIALSSLLLFAGWLHLQPKFRPSLSWFK NESRLNHHLTGLFGVSSLAWTGHLVHVAIP SRGIH+GWDNFLTTLPHPDGL PFFDGNWN YSQ
Sbjct:    5 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWSLNPLKVKPIAHTIWDPHFGELAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYVGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKTNESRLNHHLTGLFGVSSLAWTGHLVHVAIPASRGIHVGWDNFLTTLPHPDGLTPFFDGNWNAYSQ 221          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0R6MFW0_UNDPI (Photosystem I P700 chlorophyll a apoprotein A2 n=71 Tax=Stramenopiles TaxID=33634 RepID=A0A0R6MFW0_UNDPI)

HSP 1 Score: 458 bits (1178), Expect = 6.780e-156
Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW+LNPLKVKPIAHTIWDPHFG+LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY+GSIFLIALSSLLLFAGWLHLQPKFRPSLSWFK NESRLNHHLTGLFGVSSLAWTGHLVHVAIP SRGIH+GWDNFLTTLPHPDGL PFFDGNWN YSQ
Sbjct:   19 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWSLNPLKVKPIAHTIWDPHFGELAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYVGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKTNESRLNHHLTGLFGVSSLAWTGHLVHVAIPASRGIHVGWDNFLTTLPHPDGLTPFFDGNWNAYSQ 235          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0S3NV06_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Notheia anomala TaxID=97153 RepID=A0A0S3NV06_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 3.570e-155
Identity = 201/216 (93.06%), Postives = 208/216 (96.30%), Query Frame = 1
Query:    4 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFE+WALNPLKVKPIAHTIWDPHFG+LAMKAF+KGGAFYPVNI+YSGVYHWWYTIGMRT NDLYI SIFLI LSS+ LFAGWLHLQPKFRPS+S FKNNESRLNHHLTGLFGVSSL WTGHLVHVAIPESRGIHIGWDNFLTTLPHP+GL PFFDGNWN YSQ
Sbjct:    1 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEEWALNPLKVKPIAHTIWDPHFGELAMKAFSKGGAFYPVNISYSGVYHWWYTIGMRTKNDLYISSIFLIILSSVFLFAGWLHLQPKFRPSISGFKNNESRLNHHLTGLFGVSSLGWTGHLVHVAIPESRGIHIGWDNFLTTLPHPEGLKPFFDGNWNAYSQ 216          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A7T7IGM3_9STRA (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Stichogloea TaxID=82160 RepID=A0A7T7IGM3_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 3.630e-150
Identity = 200/217 (92.17%), Postives = 209/217 (96.31%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG+ A+KAFTK GAFYPVNI+YSGVY WWYTIGMRTNNDLY+GSIFLI  SSL LFAGWLHLQPKFRPSLSWFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRGIH+GWDNFLTTLPHP+GLAPFF GNWN+Y+Q
Sbjct:   19 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWVLNPLKVKPIAHTIWDPHFGEPAIKAFTKAGAFYPVNISYSGVYQWWYTIGMRTNNDLYLGSIFLILASSLFLFAGWLHLQPKFRPSLSWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGIHVGWDNFLTTLPHPEGLAPFFSGNWNVYAQ 235          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0H5BB96_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0H5BB96_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 9.320e-148
Identity = 194/204 (95.10%), Postives = 200/204 (98.04%), Query Frame = 1
Query:   40 ETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            ETHDGMTEENLYQK+FASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG+LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY GSIFLI LSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGW+NFLT+LPHP+GL PFFDGNWNIYSQ
Sbjct:    1 ETHDGMTEENLYQKLFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWVLNPLKVKPIAHTIWDPHFGELAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYTGSIFLIVLSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWNNFLTSLPHPEGLKPFFDGNWNIYSQ 204          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: B7T242_VAULI (Photosystem I P700 chlorophyll a apoprotein A2 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B7T242_VAULI)

HSP 1 Score: 430 bits (1105), Expect = 6.800e-145
Identity = 196/217 (90.32%), Postives = 205/217 (94.47%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIW+GIATAHDFETHDGMTEE LYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFE W LNPLKVKPIAHTIWDPHFG+ A+KAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLY+GSI LI LS+L LFAG LHLQPKFRPSLSWFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRG HIGWDNFLTT PHP+GL PFF+GNWNIY+ 
Sbjct:   19 RRIWYGIATAHDFETHDGMTEEKLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEDWILNPLKVKPIAHTIWDPHFGEPALKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYLGSIGLIILSALFLFAGGLHLQPKFRPSLSWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGTHIGWDNFLTTPPHPEGLVPFFNGNWNIYAS 235          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: B2XT53_HETAK (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT53_HETAK)

HSP 1 Score: 429 bits (1103), Expect = 1.360e-144
Identity = 192/217 (88.48%), Postives = 205/217 (94.47%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIW+GIATAHDFE+HDGMTEE LYQKIFASHFGHLAIIFLWT+GNLFHVAWQGNFEQW LNPLKVKPIAH IWDPHFG  A+KAFTKGGAFYPV+I+YSGVYHWWYTIGMRTNNDLY GS+ LI  S+LLLFAGWLHLQPKF PSL+WFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRGIH+GWDNF TTLPHPDGLAPFF GNW++YSQ
Sbjct:   19 RRIWYGIATAHDFESHDGMTEEKLYQKIFASHFGHLAIIFLWTAGNLFHVAWQGNFEQWVLNPLKVKPIAHQIWDPHFGQSAIKAFTKGGAFYPVDISYSGVYHWWYTIGMRTNNDLYTGSLGLIGFSALLLFAGWLHLQPKFSPSLAWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGIHVGWDNFTTTLPHPDGLAPFFSGNWSVYSQ 235          
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A7U0KSS5_OLILU (Photosystem I P700 chlorophyll a apoprotein A2 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KSS5_OLILU)

HSP 1 Score: 422 bits (1084), Expect = 9.860e-142
Identity = 186/217 (85.71%), Postives = 205/217 (94.47%), Query Frame = 1
Query:    1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
            RRIW+GIATAHDFE+HDG+TEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLK KPIAH IWDPHFG+ A+KAFTKG + YPVNIAYSGVY WWYTIGMRTN DLY+GS+FL+ LS++LLFAGWLHLQPKF+P+++WFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRG HIGWDNFLTTLPHP GLAPFF GNWN+Y++
Sbjct:   19 RRIWYGIATAHDFESHDGITEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWILNPLKTKPIAHAIWDPHFGESAIKAFTKGNSLYPVNIAYSGVYQWWYTIGMRTNLDLYVGSVFLLILSAVLLFAGWLHLQPKFKPNIAWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGQHIGWDNFLTTLPHPQGLAPFFSGNWNVYAE 235          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5B5W8_9PHAE3.040e-16094.91Photosystem I P700 apoprotein A2 (Fragment) n=1 Ta... [more]
A0A0H5B5V3_9PHAE8.170e-15993.55Photosystem I P700 apoprotein A2 (Fragment) n=2 Ta... [more]
A0A1Z4F594_9PHAE4.120e-15895.85Photosystem I (Fragment) n=38 Tax=Phaeophyceae Tax... [more]
A0A0R6MFW0_UNDPI6.780e-15695.85Photosystem I P700 chlorophyll a apoprotein A2 n=7... [more]
A0A0S3NV06_9PHAE3.570e-15593.06Photosystem I P700 apoprotein A2 (Fragment) n=1 Ta... [more]
A0A7T7IGM3_9STRA3.630e-15092.17Photosystem I P700 chlorophyll a apoprotein A2 n=3... [more]
A0A0H5BB96_9PHAE9.320e-14895.10Photosystem I P700 apoprotein A2 (Fragment) n=2 Ta... [more]
B7T242_VAULI6.800e-14590.32Photosystem I P700 chlorophyll a apoprotein A2 n=2... [more]
B2XT53_HETAK1.360e-14488.48Photosystem I P700 chlorophyll a apoprotein A2 n=3... [more]
A0A7U0KSS5_OLILU9.860e-14285.71Photosystem I P700 chlorophyll a apoprotein A2 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85749contigS-dermatodea_contig85749:34..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score464.2
Seed ortholog evalue3.5e-128
Seed eggNOG ortholog2880.D1J7A4
Preferred namepsaB
KEGG koko:K02690
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0016168,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.chlorophyll binding
EggNOG OGs28JJ8@1,2QRYE@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size651
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925352.6259394-CDS-S-dermatodea_contig85749:33..6841622925352.6259394-CDS-S-dermatodea_contig85749:33..684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85749 34..684 +
1694079875.639122-CDS-S-dermatodea_contig85749:33..6841694079875.639122-CDS-S-dermatodea_contig85749:33..684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85749 34..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85749.16735.1prot_S-dermatodea_contig85749.16735.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85749 34..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85749.16735.1

>prot_S-dermatodea_contig85749.16735.1 ID=prot_S-dermatodea_contig85749.16735.1|Name=mRNA_S-dermatodea_contig85749.16735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHV
AWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYS
GVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWF
KNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPH
PDGLAPFFDGNWNIYSQ
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mRNA from alignment at S-dermatodea_contig85749:34..684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85749.16735.1 ID=mRNA_S-dermatodea_contig85749.16735.1|Name=mRNA_S-dermatodea_contig85749.16735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at S-dermatodea_contig85749:34..684+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGAATATGGTTTGGAATTGCAACCGCACATGATTTTGAAACGCATGA TGGAATGACAGAAGAGAATTTATATCAAAAAATTTTTGCTTCGCATTTCG GGCATTTAGCAATTATTTTTCTTTGGACTTCAGGTAATTTATTTCATGTG GCATGGCAAGGAAATTTTGAGCAATGGGCACTAAATCCATTGAAAGTAAA ACCTATTGCTCATACAATTTGGGATCCGCATTTTGGTGATTTAGCAATGA AAGCCTTTACTAAAGGTGGAGCTTTTTATCCAGTAAATATAGCTTATTCT GGTGTGTATCATTGGTGGTACACAATAGGGATGAGAACAAATAATGATTT ATATATTGGGTCTATATTTTTAATAGCCCTTTCTAGTTTATTATTATTCG CTGGATGGTTACATCTACAACCAAAATTTCGCCCAAGTTTATCTTGGTTT AAAAACAATGAATCACGTTTAAACCACCATCTAACAGGATTATTTGGTGT TAGTTCTTTAGCGTGGACTGGACATTTGGTTCATGTTGCAATTCCTGAAT CTCGTGGAATTCATATTGGGTGGGATAATTTTTTAACAACCTTACCTCAC CCGGATGGCCTAGCACCATTTTTTGATGGTAATTGGAATATTTATTCACA A
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Coding sequence (CDS) from alignment at S-dermatodea_contig85749:34..684+

>mRNA_S-dermatodea_contig85749.16735.1 ID=mRNA_S-dermatodea_contig85749.16735.1|Name=mRNA_S-dermatodea_contig85749.16735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig85749:34..684+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGAATATGGTTTGGAATTGCAACCGCACATGATTTTGAAACGCATGA
TGGAATGACAGAAGAGAATTTATATCAAAAAATTTTTGCTTCGCATTTCG
GGCATTTAGCAATTATTTTTCTTTGGACTTCAGGTAATTTATTTCATGTG
GCATGGCAAGGAAATTTTGAGCAATGGGCACTAAATCCATTGAAAGTAAA
ACCTATTGCTCATACAATTTGGGATCCGCATTTTGGTGATTTAGCAATGA
AAGCCTTTACTAAAGGTGGAGCTTTTTATCCAGTAAATATAGCTTATTCT
GGTGTGTATCATTGGTGGTACACAATAGGGATGAGAACAAATAATGATTT
ATATATTGGGTCTATATTTTTAATAGCCCTTTCTAGTTTATTATTATTCG
CTGGATGGTTACATCTACAACCAAAATTTCGCCCAAGTTTATCTTGGTTT
AAAAACAATGAATCACGTTTAAACCACCATCTAACAGGATTATTTGGTGT
TAGTTCTTTAGCGTGGACTGGACATTTGGTTCATGTTGCAATTCCTGAAT
CTCGTGGAATTCATATTGGGTGGGATAATTTTTTAACAACCTTACCTCAC
CCGGATGGCCTAGCACCATTTTTTGATGGTAATTGGAATATTTATTCACA
AAGACGAATATGGTTTGGAATTGCAACCGCACATGATTTTGAAACGCATG
ATGGAATGACAGAAGAGAATTTATATCAAAAAATTTTTGCTTCGCATTTC
GGGCATTTAGCAATTATTTTTCTTTGGACTTCAGGTAATTTATTTCATGT
GGCATGGCAAGGAAATTTTGAGCAATGGGCACTAAATCCATTGAAAGTAA
AACCTATTGCTCATACAATTTGGGATCCGCATTTTGGTGATTTAGCAATG
AAAGCCTTTACTAAAGGTGGAGCTTTTTATCCAGTAAATATAGCTTATTC
TGGTGTGTATCATTGGTGGTACACAATAGGGATGAGAACAAATAATGATT
TATATATTGGGTCTATATTTTTAATAGCCCTTTCTAGTTTATTATTATTC
GCTGGATGGTTACATCTACAACCAAAATTTCGCCCAAGTTTATCTTGGTT
TAAAAACAATGAATCACGTTTAAACCACCATCTAACAGGATTATTTGGTG
TTAGTTCTTTAGCGTGGACTGGACATTTGGTTCATGTTGCAATTCCTGAA
TCTCGTGGAATTCATATTGGGTGGGATAATTTTTTAACAACCTTACCTCA
CCCGGATGGCCTAGCACCATTTTTTGATGGTAATTGGAATATTTATTCAC
AA
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