mRNA_S-dermatodea_contig85749.16735.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0H5B5W8_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Syringoderma abyssicola TaxID=217214 RepID=A0A0H5B5W8_9PHAE) HSP 1 Score: 450 bits (1158), Expect = 3.040e-160 Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 1
Query: 4 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY GSIFLI LSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGH+VHVAIPESRGIHI W+NFLTTLPHP GL PFFDGNWN+YSQ
Sbjct: 1 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWTLNPLKVKPIAHTIWDPHFGQLAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYTGSIFLIGLSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHIVHVAIPESRGIHIRWNNFLTTLPHPSGLTPFFDGNWNVYSQ 216
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0H5B5V3_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0H5B5V3_9PHAE) HSP 1 Score: 451 bits (1159), Expect = 8.170e-159 Identity = 203/217 (93.55%), Postives = 212/217 (97.70%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIW+GIATAHDFETHDGMTEENLYQKIFASHFGH+AIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG LAMKAFTKGGA +PVNI+Y+G+YHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRP+LSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTT PHPDGL PFFDGNWN+Y+Q
Sbjct: 1 RRIWYGIATAHDFETHDGMTEENLYQKIFASHFGHIAIIFLWTSGNLFHVAWQGNFEQWILNPLKVKPIAHTIWDPHFGSLAMKAFTKGGAIFPVNISYAGLYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPNLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTAPHPDGLTPFFDGNWNLYAQ 217
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A1Z4F594_9PHAE (Photosystem I (Fragment) n=38 Tax=Phaeophyceae TaxID=2870 RepID=A0A1Z4F594_9PHAE) HSP 1 Score: 458 bits (1178), Expect = 4.120e-158 Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW+LNPLKVKPIAHTIWDPHFG+LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY+GSIFLIALSSLLLFAGWLHLQPKFRPSLSWFK NESRLNHHLTGLFGVSSLAWTGHLVHVAIP SRGIH+GWDNFLTTLPHPDGL PFFDGNWN YSQ
Sbjct: 5 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWSLNPLKVKPIAHTIWDPHFGELAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYVGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKTNESRLNHHLTGLFGVSSLAWTGHLVHVAIPASRGIHVGWDNFLTTLPHPDGLTPFFDGNWNAYSQ 221
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0R6MFW0_UNDPI (Photosystem I P700 chlorophyll a apoprotein A2 n=71 Tax=Stramenopiles TaxID=33634 RepID=A0A0R6MFW0_UNDPI) HSP 1 Score: 458 bits (1178), Expect = 6.780e-156 Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW+LNPLKVKPIAHTIWDPHFG+LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY+GSIFLIALSSLLLFAGWLHLQPKFRPSLSWFK NESRLNHHLTGLFGVSSLAWTGHLVHVAIP SRGIH+GWDNFLTTLPHPDGL PFFDGNWN YSQ
Sbjct: 19 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWSLNPLKVKPIAHTIWDPHFGELAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYVGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKTNESRLNHHLTGLFGVSSLAWTGHLVHVAIPASRGIHVGWDNFLTTLPHPDGLTPFFDGNWNAYSQ 235
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0S3NV06_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Notheia anomala TaxID=97153 RepID=A0A0S3NV06_9PHAE) HSP 1 Score: 441 bits (1135), Expect = 3.570e-155 Identity = 201/216 (93.06%), Postives = 208/216 (96.30%), Query Frame = 1
Query: 4 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFE+WALNPLKVKPIAHTIWDPHFG+LAMKAF+KGGAFYPVNI+YSGVYHWWYTIGMRT NDLYI SIFLI LSS+ LFAGWLHLQPKFRPS+S FKNNESRLNHHLTGLFGVSSL WTGHLVHVAIPESRGIHIGWDNFLTTLPHP+GL PFFDGNWN YSQ
Sbjct: 1 RIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEEWALNPLKVKPIAHTIWDPHFGELAMKAFSKGGAFYPVNISYSGVYHWWYTIGMRTKNDLYISSIFLIILSSVFLFAGWLHLQPKFRPSISGFKNNESRLNHHLTGLFGVSSLGWTGHLVHVAIPESRGIHIGWDNFLTTLPHPEGLKPFFDGNWNAYSQ 216
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A7T7IGM3_9STRA (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Stichogloea TaxID=82160 RepID=A0A7T7IGM3_9STRA) HSP 1 Score: 443 bits (1140), Expect = 3.630e-150 Identity = 200/217 (92.17%), Postives = 209/217 (96.31%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG+ A+KAFTK GAFYPVNI+YSGVY WWYTIGMRTNNDLY+GSIFLI SSL LFAGWLHLQPKFRPSLSWFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRGIH+GWDNFLTTLPHP+GLAPFF GNWN+Y+Q
Sbjct: 19 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWVLNPLKVKPIAHTIWDPHFGEPAIKAFTKAGAFYPVNISYSGVYQWWYTIGMRTNNDLYLGSIFLILASSLFLFAGWLHLQPKFRPSLSWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGIHVGWDNFLTTLPHPEGLAPFFSGNWNVYAQ 235
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A0H5BB96_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0H5BB96_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 9.320e-148 Identity = 194/204 (95.10%), Postives = 200/204 (98.04%), Query Frame = 1
Query: 40 ETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
ETHDGMTEENLYQK+FASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLKVKPIAHTIWDPHFG+LAMKAFTKGGAFYPVNI+YSGVYHWWYTIGMRTNNDLY GSIFLI LSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGW+NFLT+LPHP+GL PFFDGNWNIYSQ
Sbjct: 1 ETHDGMTEENLYQKLFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWVLNPLKVKPIAHTIWDPHFGELAMKAFTKGGAFYPVNISYSGVYHWWYTIGMRTNNDLYTGSIFLIVLSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWNNFLTSLPHPEGLKPFFDGNWNIYSQ 204
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: B7T242_VAULI (Photosystem I P700 chlorophyll a apoprotein A2 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B7T242_VAULI) HSP 1 Score: 430 bits (1105), Expect = 6.800e-145 Identity = 196/217 (90.32%), Postives = 205/217 (94.47%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIW+GIATAHDFETHDGMTEE LYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFE W LNPLKVKPIAHTIWDPHFG+ A+KAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLY+GSI LI LS+L LFAG LHLQPKFRPSLSWFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRG HIGWDNFLTT PHP+GL PFF+GNWNIY+
Sbjct: 19 RRIWYGIATAHDFETHDGMTEEKLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEDWILNPLKVKPIAHTIWDPHFGEPALKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYLGSIGLIILSALFLFAGGLHLQPKFRPSLSWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGTHIGWDNFLTTPPHPEGLVPFFNGNWNIYAS 235
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: B2XT53_HETAK (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT53_HETAK) HSP 1 Score: 429 bits (1103), Expect = 1.360e-144 Identity = 192/217 (88.48%), Postives = 205/217 (94.47%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIW+GIATAHDFE+HDGMTEE LYQKIFASHFGHLAIIFLWT+GNLFHVAWQGNFEQW LNPLKVKPIAH IWDPHFG A+KAFTKGGAFYPV+I+YSGVYHWWYTIGMRTNNDLY GS+ LI S+LLLFAGWLHLQPKF PSL+WFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRGIH+GWDNF TTLPHPDGLAPFF GNW++YSQ
Sbjct: 19 RRIWYGIATAHDFESHDGMTEEKLYQKIFASHFGHLAIIFLWTAGNLFHVAWQGNFEQWVLNPLKVKPIAHQIWDPHFGQSAIKAFTKGGAFYPVDISYSGVYHWWYTIGMRTNNDLYTGSLGLIGFSALLLFAGWLHLQPKFSPSLAWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGIHVGWDNFTTTLPHPDGLAPFFSGNWSVYSQ 235
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Match: A0A7U0KSS5_OLILU (Photosystem I P700 chlorophyll a apoprotein A2 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KSS5_OLILU) HSP 1 Score: 422 bits (1084), Expect = 9.860e-142 Identity = 186/217 (85.71%), Postives = 205/217 (94.47%), Query Frame = 1
Query: 1 RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWALNPLKVKPIAHTIWDPHFGDLAMKAFTKGGAFYPVNIAYSGVYHWWYTIGMRTNNDLYIGSIFLIALSSLLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLTGLFGVSSLAWTGHLVHVAIPESRGIHIGWDNFLTTLPHPDGLAPFFDGNWNIYSQ 651
RRIW+GIATAHDFE+HDG+TEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQW LNPLK KPIAH IWDPHFG+ A+KAFTKG + YPVNIAYSGVY WWYTIGMRTN DLY+GS+FL+ LS++LLFAGWLHLQPKF+P+++WFKNNESRLNHHL+GLFGVSSLAWTGHLVHVAIPESRG HIGWDNFLTTLPHP GLAPFF GNWN+Y++
Sbjct: 19 RRIWYGIATAHDFESHDGITEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWILNPLKTKPIAHAIWDPHFGESAIKAFTKGNSLYPVNIAYSGVYQWWYTIGMRTNLDLYVGSVFLLILSAVLLFAGWLHLQPKFKPNIAWFKNNESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGQHIGWDNFLTTLPHPQGLAPFFSGNWNVYAE 235 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85749.16735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig85749.16735.1 >prot_S-dermatodea_contig85749.16735.1 ID=prot_S-dermatodea_contig85749.16735.1|Name=mRNA_S-dermatodea_contig85749.16735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp RRIWFGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVback to top mRNA from alignment at S-dermatodea_contig85749:34..684+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig85749.16735.1 ID=mRNA_S-dermatodea_contig85749.16735.1|Name=mRNA_S-dermatodea_contig85749.16735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at S-dermatodea_contig85749:34..684+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig85749:34..684+ >mRNA_S-dermatodea_contig85749.16735.1 ID=mRNA_S-dermatodea_contig85749.16735.1|Name=mRNA_S-dermatodea_contig85749.16735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig85749:34..684+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |