mRNA_S-dermatodea_contig8534.16706.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI) HSP 1 Score: 344 bits (883), Expect = 1.040e-113 Identity = 206/301 (68.44%), Postives = 230/301 (76.41%), Query Frame = 1
Query: 271 DGSNGGTVAQALASAEGNAAA-LSLLESLLASLNALLAEYGLPSAPVLCAALAVSILALTFAGKVGFGGXXXXXXXXXXXXKQRKGVVLFLGPCGSGKTAMCYRLCNDR---LAPTVTSMQPCRYACG-----------GLTPGGKA-SASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFVRASV 1125
+G G VAQALAS AAA LS LESLLASL + LAEYGLPSA ++ +A++I L GKVG XXXXXXXXX +RKGVVLFLGPCGSGKTAMCYRL + L PT TSM+ CRY C G P A S SLVDYPGHERLRGGV EELR ADRVVF+LDGSCL AQ+AAGAELLYDVLTDP++EGC+GLMLALNKSD+KEAKASR KTL+QKEL+KLRGT GEEDDMPVAMALGRPGQPFSLEVDSPCEVV+A CSVA++GGL+ V +FVRAS+
Sbjct: 63 EGEIAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGI-----XXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA) HSP 1 Score: 135 bits (341), Expect = 6.820e-35 Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1
Query: 661 KASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDD-MPVA-MALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
K S ++ D+PGHERLRGG+R EL + V+F+LDG+ L +Q+ G E+LYD+LTD ++E C+GL + +K+D+K AK RV+ + KELE+LR T GEED P + + LGR GQP L VD PC + + +CSV +G L V +F+
Sbjct: 22 KGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.560e-27 Identity = 72/204 (35.29%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 517 RKGVVLFLGPCGSGKTAMCYRLCNDRLA-PTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAM-EGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
++ V+L LGPCGSGKTA+ +RL + ++ TVTSM+ L A+ S++D+PGHERLR + A ++VF++D + + Q+ AE L+D+ T P + + +++A +K+D A A SR++ L++ EL +L+GT +++ +P LGR PF+ +VD+PCEVV S S+ G+ P+ +F+
Sbjct: 41 KRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFP-LHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA) HSP 1 Score: 119 bits (298), Expect = 4.660e-27 Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 1
Query: 511 KQRKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRV---VFVLDGSCLGA-QIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARD---GGLEPVAEFV 1113
+ R V+ LGPCG+GKTA+ ++L + + TVTSM G+ LVD+PGHERLRGG +++ A +V +FV+D + ++ AE LYD+LT AM+ L++A +KSD+ AKA +R+K L+ ELE+LR T G ++ + LGR P +L+VD+P E+ AS +VA+ GG + + E +
Sbjct: 117 RARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESE----GILK--DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDI 319
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.590e-26 Identity = 73/204 (35.78%), Postives = 117/204 (57.35%), Query Frame = 1
Query: 517 RKGVVLFLGPCGSGKTAMCYRLCND-RLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAM-EGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
++ V+L LGPCG GKTA+ +RL + TVTSM+ L A+ S++D+PGHERLR V + A ++VFV+D + +G AQ+ AE LYD+ P + + L++A +K+DV A S +++L++ EL +L+ T +++ +P LGR PF+ +VD+PCEVV S S+ + P+ +F+
Sbjct: 41 KRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA) HSP 1 Score: 114 bits (285), Expect = 5.100e-26 Identity = 73/206 (35.44%), Postives = 120/206 (58.25%), Query Frame = 1
Query: 517 RKGVVLFLGPCGSGKTAMCYRLCNDRLAPT---VTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
++ V+L +GPCG GKTA+ +RL D +PT VTSM+ + L A+ S++D+PGHERLR V + A ++VFV+D + + AQ+ AE L+DV T P + +++A +KSD+ A A R+++L++ EL +L+ T +++ +P LGR PF+ +VD+PCEVV + S+ + P+ +F+
Sbjct: 41 KRDVILLVGPCGGGKTALFHRL-RDGPSPTLETVTSMKETLESFP-LFDEDSANVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.080e-25 Identity = 68/204 (33.33%), Postives = 114/204 (55.88%), Query Frame = 1
Query: 517 RKGVVLFLGPCGSGKTAMCYRLCNDRL-APTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSD-VKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
++ +VL +GPCG+GKTA+ +RL + TVTSM+ L A+ ++ D+PGHER+R + A +++FV+D + I AE LYD+ T P + +M+A +KSD K A ++ V++L++ EL +L+ T GE+D+ ++ LGR PF+ ++D+PCEV + S+ L P+ +F+
Sbjct: 41 KRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFP-LFDEENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC) HSP 1 Score: 106 bits (264), Expect = 4.980e-23 Identity = 68/201 (33.83%), Postives = 109/201 (54.23%), Query Frame = 1
Query: 526 VVLFLGPCGSGKTAMCYRLCNDRL-APTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSD-VKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
VVL +GPCG+GKTA+ +RL N TVTSM+ L A+ S+ D+PGHER+R + A +++FV+D + + I AE LYD+ T P + +M+A +K+D VK A + V++L++ EL +L+ T G++D+ ++ LGR F +D+PC+V S+ L P+ +F+
Sbjct: 44 VVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFP-LFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA) HSP 1 Score: 104 bits (260), Expect = 9.460e-23 Identity = 73/184 (39.67%), Postives = 96/184 (52.17%), Query Frame = 1
Query: 511 KQRKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPA-MEGCRGLMLALNKSDVKEAKAS-RVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMA-LGRPGQPFSLEVDSPCEV 1053
+ R +L +GPCGSGKT + YRL +D TV+SMQP +P G LVD PGH RLRG + +EL A ++FV D S Q AELLY +L+ A + L+ NKSD K K + RVK +M E+E LR T + A LG PGQ F+ + SPC++
Sbjct: 28 RTRSASILIVGPCGSGKTLLFYRLVHDETVDTVSSMQPNE---SPASPDG-LPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL) HSP 1 Score: 103 bits (256), Expect = 8.680e-22 Identity = 78/205 (38.05%), Postives = 105/205 (51.22%), Query Frame = 1
Query: 517 RKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPC--RYACGGL--TPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLML-ALNKSDVKEAKASRV-KTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
+K + + LGP G+GKTA+ ++L + R TVTSM ++A T A S+VDYPGHERLR V + VVFV+D + AE LYD+ ++ ML A NK+D+K A V K ++KEL KL+ T GEED V + GR G F VD+PCEV S + G ++ VA FV
Sbjct: 53 KKKMTMLLGPRGAGKTALFHQLRDGRFVETVTSMTELEGKFAVHDRYNTINFGAHLSIVDYPGHERLRSRVADYYPVTGCVVFVVDAA--DQSFRKAAEYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDTSVVPV--GRDGVAFEFAVDAPCEVTFVKSSF-KAGDVDDVATFV 252 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8534.16706.1 >prot_S-dermatodea_contig8534.16706.1 ID=prot_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=377bp MLETTTIYVAPASRQRHHGSGGGGGGGGGTVSKADFWMLRLAVALASSTLback to top mRNA from alignment at S-dermatodea_contig8534:6416..7546- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8534.16706.1 ID=mRNA_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1131bp|location=Sequence derived from alignment at S-dermatodea_contig8534:6416..7546- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8534:6416..7546- >mRNA_S-dermatodea_contig8534.16706.1 ID=mRNA_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at S-dermatodea_contig8534:6416..7546- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |