mRNA_S-dermatodea_contig8534.16706.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8534.16706.1
Unique NamemRNA_S-dermatodea_contig8534.16706.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 1.040e-113
Identity = 206/301 (68.44%), Postives = 230/301 (76.41%), Query Frame = 1
Query:  271 DGSNGGTVAQALASAEGNAAA-LSLLESLLASLNALLAEYGLPSAPVLCAALAVSILALTFAGKVGFGGXXXXXXXXXXXXKQRKGVVLFLGPCGSGKTAMCYRLCNDR---LAPTVTSMQPCRYACG-----------GLTPGGKA-SASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFVRASV 1125
            +G   G VAQALAS    AAA LS LESLLASL + LAEYGLPSA ++   +A++I  L   GKVG      XXXXXXXXX +RKGVVLFLGPCGSGKTAMCYRL +     L PT TSM+ CRY C            G  P   A S SLVDYPGHERLRGGV EELR ADRVVF+LDGSCL AQ+AAGAELLYDVLTDP++EGC+GLMLALNKSD+KEAKASR KTL+QKEL+KLRGT       GEEDDMPVAMALGRPGQPFSLEVDSPCEVV+A CSVA++GGL+ V +FVRAS+
Sbjct:   63 EGEIAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGI-----XXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 6.820e-35
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1
Query:  661 KASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDD-MPVA-MALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            K S ++ D+PGHERLRGG+R EL  +  V+F+LDG+ L +Q+  G E+LYD+LTD ++E C+GL +  +K+D+K AK  RV+  + KELE+LR T       GEED   P + + LGR GQP  L VD PC + + +CSV  +G L  V +F+
Sbjct:   22 KGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.560e-27
Identity = 72/204 (35.29%), Postives = 120/204 (58.82%), Query Frame = 1
Query:  517 RKGVVLFLGPCGSGKTAMCYRLCNDRLA-PTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAM-EGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            ++ V+L LGPCGSGKTA+ +RL +  ++  TVTSM+        L     A+ S++D+PGHERLR    +    A ++VF++D + +    Q+   AE L+D+ T P + +    +++A +K+D   A A SR++ L++ EL +L+GT        +++ +P    LGR   PF+ +VD+PCEVV  S S+    G+ P+ +F+
Sbjct:   41 KRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFP-LHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.660e-27
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 1
Query:  511 KQRKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRV---VFVLDGSCLGA-QIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARD---GGLEPVAEFV 1113
            + R   V+ LGPCG+GKTA+ ++L  + +  TVTSM        G+         LVD+PGHERLRGG +++   A +V   +FV+D +     ++   AE LYD+LT  AM+    L++A +KSD+  AKA +R+K L+  ELE+LR T       G  ++    + LGR   P +L+VD+P E+  AS +VA+    GG + + E +
Sbjct:  117 RARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESE----GILK--DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDI 319          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.590e-26
Identity = 73/204 (35.78%), Postives = 117/204 (57.35%), Query Frame = 1
Query:  517 RKGVVLFLGPCGSGKTAMCYRLCND-RLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAM-EGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            ++ V+L LGPCG GKTA+ +RL +      TVTSM+        L     A+ S++D+PGHERLR  V +    A ++VFV+D + +G  AQ+   AE LYD+   P + +    L++A +K+DV  A   S +++L++ EL +L+ T        +++ +P    LGR   PF+ +VD+PCEVV  S S+     + P+ +F+
Sbjct:   41 KRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.100e-26
Identity = 73/206 (35.44%), Postives = 120/206 (58.25%), Query Frame = 1
Query:  517 RKGVVLFLGPCGSGKTAMCYRLCNDRLAPT---VTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            ++ V+L +GPCG GKTA+ +RL  D  +PT   VTSM+    +   L     A+ S++D+PGHERLR  V +    A ++VFV+D + +   AQ+   AE L+DV T P +      +++A +KSD+  A A  R+++L++ EL +L+ T        +++ +P    LGR   PF+ +VD+PCEVV  + S+     + P+ +F+
Sbjct:   41 KRDVILLVGPCGGGKTALFHRL-RDGPSPTLETVTSMKETLESFP-LFDEDSANVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.080e-25
Identity = 68/204 (33.33%), Postives = 114/204 (55.88%), Query Frame = 1
Query:  517 RKGVVLFLGPCGSGKTAMCYRLCNDRL-APTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSD-VKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            ++ +VL +GPCG+GKTA+ +RL +      TVTSM+        L     A+ ++ D+PGHER+R    +    A +++FV+D +       I   AE LYD+ T P +      +M+A +KSD  K A ++ V++L++ EL +L+ T       GE+D+   ++ LGR   PF+ ++D+PCEV   + S+     L P+ +F+
Sbjct:   41 KRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFP-LFDEENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 106 bits (264), Expect = 4.980e-23
Identity = 68/201 (33.83%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  526 VVLFLGPCGSGKTAMCYRLCNDRL-APTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSD-VKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            VVL +GPCG+GKTA+ +RL N      TVTSM+        L     A+ S+ D+PGHER+R    +    A +++FV+D +     + I   AE LYD+ T P +      +M+A +K+D VK A  + V++L++ EL +L+ T       G++D+   ++ LGR    F   +D+PC+V     S+     L P+ +F+
Sbjct:   44 VVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFP-LFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.460e-23
Identity = 73/184 (39.67%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  511 KQRKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPA-MEGCRGLMLALNKSDVKEAKAS-RVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMA-LGRPGQPFSLEVDSPCEV 1053
            + R   +L +GPCGSGKT + YRL +D    TV+SMQP        +P G     LVD PGH RLRG + +EL  A  ++FV D S    Q    AELLY +L+  A  +    L+   NKSD K  K + RVK +M  E+E LR T        +        A LG PGQ F+ +  SPC++
Sbjct:   28 RTRSASILIVGPCGSGKTLLFYRLVHDETVDTVSSMQPNE---SPASPDG-LPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 8.680e-22
Identity = 78/205 (38.05%), Postives = 105/205 (51.22%), Query Frame = 1
Query:  517 RKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPC--RYACGGL--TPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLML-ALNKSDVKEAKASRV-KTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 1113
            +K + + LGP G+GKTA+ ++L + R   TVTSM     ++A      T    A  S+VDYPGHERLR  V +       VVFV+D +         AE LYD+ ++         ML A NK+D+K A    V K  ++KEL KL+ T       GEED   V +  GR G  F   VD+PCEV     S  + G ++ VA FV
Sbjct:   53 KKKMTMLLGPRGAGKTALFHQLRDGRFVETVTSMTELEGKFAVHDRYNTINFGAHLSIVDYPGHERLRSRVADYYPVTGCVVFVVDAA--DQSFRKAAEYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDTSVVPV--GRDGVAFEFAVDAPCEVTFVKSSF-KAGDVDDVATFV 252          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI1.040e-11368.44Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA6.820e-3546.41Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA3.560e-2735.29Signal recognition particle receptor subunit beta ... [more]
W7U264_9STRA4.660e-2737.32Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA3.590e-2635.78Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA5.100e-2635.44Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA7.080e-2533.33Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC4.980e-2333.83Signal recognition particle receptor subunit beta ... [more]
A0A7S3JR42_9STRA9.460e-2339.67Signal recognition particle receptor subunit beta ... [more]
A0A8K1FBH7_PYTOL8.680e-2238.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8534contigS-dermatodea_contig8534:6416..7546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.7
Seed ortholog evalue5.3e-92
Seed eggNOG ortholog2880.D7FJF4
Preferred nameSRPRB
KEGG koko:K12272,ko:K13343,ko:K14736
KEGG TC3.A.20.1,3.A.5.8
KEGG Pathwayko03060,ko04066,ko04146,ko04216,ko04978,map03060,map04066,map04146,map04216,map04978
GOsGO:0000041,GO:0000166,GO:0001666,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002526,GO:0003002,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005506,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0005856,GO:0005874,GO:0005881,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007591,GO:0008104,GO:0008150,GO:0008199,GO:0008219,GO:0008284,GO:0008363,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010720,GO:0012501,GO:0012505,GO:0014013,GO:0014015,GO:0014070,GO:0014074,GO:0015031,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019725,GO:0019899,GO:0022008,GO:0023052,GO:0030001,GO:0030003,GO:0030154,GO:0030176,GO:0030867,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031625,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031984,GO:0032354,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034698,GO:0034976,GO:0035017,GO:0035293,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036293,GO:0036498,GO:0040003,GO:0042127,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042592,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044057,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051286,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060284,GO:0062023,GO:0065007,GO:0065008,GO:0070445,GO:0070447,GO:0070482,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071371,GO:0071372,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072512,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098771,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000177,GO:2000179
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG2229@1,KOG0090@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSRPRB, beta subunit of the signal recognition particle receptor
Ec32 orthologEc-14_006140.1
Exons1
Model size1131
Cds size1131
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.3181634-CDS-S-dermatodea_contig8534:6415..75461622925350.3181634-CDS-S-dermatodea_contig8534:6415..7546Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8534 6416..7546 -
1694079873.9802628-CDS-S-dermatodea_contig8534:6415..75461694079873.9802628-CDS-S-dermatodea_contig8534:6415..7546Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8534 6416..7546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8534.16706.1prot_S-dermatodea_contig8534.16706.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8534 6416..7546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8534.16706.1

>prot_S-dermatodea_contig8534.16706.1 ID=prot_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=377bp
MLETTTIYVAPASRQRHHGSGGGGGGGGGTVSKADFWMLRLAVALASSTL
AIATPSSAEEQLHADSSSSSSSIGGGDPVVLAAAAHVNSADGSNGGTVAQ
ALASAEGNAAALSLLESLLASLNALLAEYGLPSAPVLCAALAVSILALTF
AGKVGFGGGGGGGVGGGSAKKQRKGVVLFLGPCGSGKTAMCYRLCNDRLA
PTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVV
FVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASR
VKTLMQKELEKLRGTRGTLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCE
VVIASCSVARDGGLEPVAEFVRASVR*
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mRNA from alignment at S-dermatodea_contig8534:6416..7546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8534.16706.1 ID=mRNA_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1131bp|location=Sequence derived from alignment at S-dermatodea_contig8534:6416..7546- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGAGACAACGACGATCTACGTCGCGCCGGCGAGCCGGCAGCGCCA CCACGGTAGTGGCGGCGGCGGCGGCGGCGGCGGCGGCACCGTGAGCAAGG CCGACTTCTGGATGCTTCGCCTAGCTGTCGCCCTCGCTTCTTCCACTCTC GCCATAGCCACGCCCTCCTCGGCCGAAGAACAACTCCACGCCGACAGCAG CAGCAGCAGCAGCAGCATTGGTGGTGGCGACCCGGTGGTGCTGGCAGCTG CCGCACATGTAAATTCCGCCGACGGGAGCAATGGTGGGACCGTGGCCCAG GCGCTCGCTTCTGCGGAGGGTAATGCCGCGGCGCTGTCGCTGCTGGAATC GCTTCTGGCCTCGCTCAACGCCCTCCTCGCAGAGTACGGCCTGCCCTCCG CCCCCGTGCTGTGCGCGGCCCTCGCCGTGTCCATCCTGGCCCTCACCTTC GCGGGGAAGGTGGGTTTCGGTGGTGGTGGTGGCGGTGGCGTCGGCGGCGG GTCGGCAAAGAAACAACGCAAGGGTGTGGTGCTGTTTCTGGGGCCCTGCG GTTCAGGGAAGACAGCCATGTGCTACCGCTTGTGTAACGACCGGCTCGCG CCCACGGTAACCTCGATGCAGCCCTGCAGGTACGCCTGCGGTGGGCTGAC ACCCGGCGGCAAGGCGTCTGCCTCCCTGGTCGACTACCCGGGCCACGAAA GGCTCCGGGGTGGCGTGAGGGAGGAGCTGCGAAGGGCCGACCGCGTGGTG TTCGTGCTTGATGGGTCGTGCCTCGGGGCGCAGATAGCGGCCGGCGCGGA GCTCCTGTACGACGTGTTGACGGACCCCGCCATGGAGGGCTGCCGAGGTC TCATGCTCGCGCTCAACAAGAGCGACGTCAAGGAGGCCAAGGCCTCCAGG GTCAAGACGCTCATGCAGAAGGAGCTGGAGAAGCTCAGGGGCACGCGCGG GACGCTGGGGACGCAGGGGGAGGAGGACGACATGCCGGTGGCGATGGCGC TCGGGCGGCCGGGCCAGCCGTTCAGCCTCGAGGTGGACTCGCCATGCGAG GTGGTTATCGCCTCTTGCTCCGTCGCGAGAGACGGCGGCCTAGAACCCGT CGCGGAGTTTGTGCGCGCTTCGGTGCGTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8534:6416..7546-

>mRNA_S-dermatodea_contig8534.16706.1 ID=mRNA_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at S-dermatodea_contig8534:6416..7546- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGAGACAACGACGATCTACGTCGCGCCGGCGAGCCGGCAGCGCCA
CCACGGTAGTGGCGGCGGCGGCGGCGGCGGCGGCGGCACCGTGAGCAAGG
CCGACTTCTGGATGCTTCGCCTAGCTGTCGCCCTCGCTTCTTCCACTCTC
GCCATAGCCACGCCCTCCTCGGCCGAAGAACAACTCCACGCCGACAGCAG
CAGCAGCAGCAGCAGCATTGGTGGTGGCGACCCGGTGGTGCTGGCAGCTG
CCGCACATGTAAATTCCGCCGACGGGAGCAATGGTGGGACCGTGGCCCAG
GCGCTCGCTTCTGCGGAGGGTAATGCCGCGGCGCTGTCGCTGCTGGAATC
GCTTCTGGCCTCGCTCAACGCCCTCCTCGCAGAGTACGGCCTGCCCTCCG
CCCCCGTGCTGTGCGCGGCCCTCGCCGTGTCCATCCTGGCCCTCACCTTC
GCGGGGAAGGTGGGTTTCGGTGGTGGTGGTGGCGGTGGCGTCGGCGGCGG
GTCGGCAAAGAAACAACGCAAGGGTGTGGTGCTGTTTCTGGGGCCCTGCG
GTTCAGGGAAGACAGCCATGTGCTACCGCTTGTGTAACGACCGGCTCGCG
CCCACGGTAACCTCGATGCAGCCCTGCAGGTACGCCTGCGGTGGGCTGAC
ACCCGGCGGCAAGGCGTCTGCCTCCCTGGTCGACTACCCGGGCCACGAAA
GGCTCCGGGGTGGCGTGAGGGAGGAGCTGCGAAGGGCCGACCGCGTGGTG
TTCGTGCTTGATGGGTCGTGCCTCGGGGCGCAGATAGCGGCCGGCGCGGA
GCTCCTGTACGACGTGTTGACGGACCCCGCCATGGAGGGCTGCCGAGGTC
TCATGCTCGCGCTCAACAAGAGCGACGTCAAGGAGGCCAAGGCCTCCAGG
GTCAAGACGCTCATGCAGAAGGAGCTGGAGAAGCTCAGGGGCACGCGCGG
GACGCTGGGGACGCAGGGGGAGGAGGACGACATGCCGGTGGCGATGGCGC
TCGGGCGGCCGGGCCAGCCGTTCAGCCTCGAGGTGGACTCGCCATGCGAG
GTGGTTATCGCCTCTTGCTCCGTCGCGAGAGACGGCGGCCTAGAACCCGT
CGCGGAGTTTGTGCGCGCTTCGGTGCGTTAGATGCTCGAGACAACGACGA
TCTACGTCGCGCCGGCGAGCCGGCAGCGCCACCACGGTAGTGGCGGCGGC
GGCGGCGGCGGCGGCGGCACCGTGAGCAAGGCCGACTTCTGGATGCTTCG
CCTAGCTGTCGCCCTCGCTTCTTCCACTCTCGCCATAGCCACGCCCTCCT
CGGCCGAAGAACAACTCCACGCCGACAGCAGCAGCAGCAGCAGCAGCATT
GGTGGTGGCGACCCGGTGGTGCTGGCAGCTGCCGCACATGTAAATTCCGC
CGACGGGAGCAATGGTGGGACCGTGGCCCAGGCGCTCGCTTCTGCGGAGG
GTAATGCCGCGGCGCTGTCGCTGCTGGAATCGCTTCTGGCCTCGCTCAAC
GCCCTCCTCGCAGAGTACGGCCTGCCCTCCGCCCCCGTGCTGTGCGCGGC
CCTCGCCGTGTCCATCCTGGCCCTCACCTTCGCGGGGAAGGTGGGTTTCG
GTGGTGGTGGTGGCGGTGGCGTCGGCGGCGGGTCGGCAAAGAAACAACGC
AAGGGTGTGGTGCTGTTTCTGGGGCCCTGCGGTTCAGGGAAGACAGCCAT
GTGCTACCGCTTGTGTAACGACCGGCTCGCGCCCACGGTAACCTCGATGC
AGCCCTGCAGGTACGCCTGCGGTGGGCTGACACCCGGCGGCAAGGCGTCT
GCCTCCCTGGTCGACTACCCGGGCCACGAAAGGCTCCGGGGTGGCGTGAG
GGAGGAGCTGCGAAGGGCCGACCGCGTGGTGTTCGTGCTTGATGGGTCGT
GCCTCGGGGCGCAGATAGCGGCCGGCGCGGAGCTCCTGTACGACGTGTTG
ACGGACCCCGCCATGGAGGGCTGCCGAGGTCTCATGCTCGCGCTCAACAA
GAGCGACGTCAAGGAGGCCAAGGCCTCCAGGGTCAAGACGCTCATGCAGA
AGGAGCTGGAGAAGCTCAGGGGCACGCGCGGGACGCTGGGGACGCAGGGG
GAGGAGGACGACATGCCGGTGGCGATGGCGCTCGGGCGGCCGGGCCAGCC
GTTCAGCCTCGAGGTGGACTCGCCATGCGAGGTGGTTATCGCCTCTTGCT
CCGTCGCGAGAGACGGCGGCCTAGAACCCGTCGCGGAGTTTGTGCGCGCT
TCGGTGCGTTAG
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