mRNA_S-dermatodea_contig85339.16704.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85339.16704.1
Unique NamemRNA_S-dermatodea_contig85339.16704.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 3.790e-75
Identity = 123/152 (80.92%), Postives = 132/152 (86.84%), Query Frame = 1
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTG-----GGS------RNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDVQ 423
            +PPFHDRVEGGVELGVGAYPEERMFVLDVP+TG     GG+      R KRVHLAPNPAWLR+NEVTIGVS+TD L DLSGDEVSAG  G NRLARLA HLL+QQSFYPLFPPPAG+AAQLDMRHA RWGMP+TPDVLLVPS+LAQFAR VQ
Sbjct:  483 QPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 634          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.690e-40
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGG-GSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQ---LDMRHAQRWGMPSTPDVLLVPSKLAQFAR 414
            +PPF DRVEGG +     +PEE++F LD+P TGG G  +KRVH   NPA +++NEV +GV++TDVL+ L   E++      NRL RLAEHLL+QQSF+PLFP   G A +   +DM  + R  MP +PDVLLVPS+LA FAR
Sbjct:  151 QPPFADRVEGGQQSPF--FPEEKLFTLDIPHTGGLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFAR 290          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S3URV2_HETAK (DNA polymerase alpha subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URV2_HETAK)

HSP 1 Score: 144 bits (364), Expect = 2.910e-40
Identity = 75/140 (53.57%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 420
            +PPF D+VEGGV      Y  + +  LD+P + G    KRVH  PNPA L +NEVTIGV++ DVL D+S + V   A  GNR+A+LAE L++QQS+YP++PPP    A+LD+RHA +W MP TPDVL+VPS+LA FA++V
Sbjct:   78 QPPFADKVEGGVPNPF--YEGDTLGTLDIPFSAG--LEKRVHCVPNPATLSLNEVTIGVTSNDVLFDISSNSVMINA--GNRMAKLAELLIQQQSYYPVYPPPERMEAKLDLRHAAKWRMPVTPDVLVVPSRLAYFAKNV 211          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: K8YQF1_NANGC (DNA polymerase alpha subunit B (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQF1_NANGC)

HSP 1 Score: 140 bits (354), Expect = 2.730e-39
Identity = 75/141 (53.19%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVP-RTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 420
            +PP  DR+ GGV      + EER+  L +P  +     +KR++   NP++  +NEV +GV+  D+L  LSGDEVS     GNRLARLA HLL+QQSF+PLFPPPA   AQLD+RHA  W MP TPDVLL+PSKL  F +DV
Sbjct:   34 QPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNP--GNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHWRMPITPDVLLLPSKLTPFVKDV 170          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.760e-34
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    4 PPFHDRVEGGVELGVGAYPEERMFVLDVP-RTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 420
            PP  DR+ GGV      + EER+  L +P  +     +KR++   NP++  +NEV +GV+  D+L  LSGDEVS     GNRLARLA HLL+QQSF+PLFPPPA   AQLD+RHA    MP TPDVLL+PSKL  F +DV
Sbjct:  486 PPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNP--GNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDV 621          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.560e-30
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    1 KPPFHDRV-EGGVELGVGAYPEERMFVLDVPRTGGGSRN-------KRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAA----AQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 420
            +PP  DR+ +GG +L + +        L +      +R        KR+H  PNP  LRINEVTIG+++TDVL  ++ DE +   P G+RLARL +HL++QQS+YPL+PPP   A      LD++  ++W M   PD+L+VPSKL  FAR V
Sbjct:  469 QPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKV 620          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2FH66_9STRA (DNA polymerase alpha subunit B n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FH66_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.990e-29
Identity = 63/142 (44.37%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGGGS-RNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQ----LDMRHAQRWGMPSTPDVLLVPSKLAQFA 411
            +PP  D+   GV+     +PEE+ F +++P         KR+HL  NPA LRINEV +G+S+TD+L+ +   E++       RL RLAEHL+ QQSF+PLFP   G  A     LD+  ++RW MP +PD+L++PSKLA FA
Sbjct:  405 QPPLTDQSRKGVKSPW--FPEEKYFDVEIPFAAQTEVTGKRMHLVSNPAMLRINEVVVGISSTDILMSMGRAEIAENPKNKQRLPRLAEHLVNQQSFFPLFPANGGVKANEDVPLDLSQSERWRMPVSPDILILPSKLATFA 544          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2WMV1_9STRA (DNA polymerase alpha subunit B n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMV1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.830e-28
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  154 INEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFAR 414
            INEV +GV++TD LL L  +E+S      NR+ RLAEH++ QQSFYPLFPPP+  A  LDMR  ++W MP +PDVL+VPSKLA FAR
Sbjct:    1 INEVIVGVTSTDALLHLGKEEISQSPASSNRITRLAEHMVLQQSFYPLFPPPSVDACPLDMRFNEKWRMPVSPDVLIVPSKLANFAR 87          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S1CYY6_CYCTE (DNA polymerase alpha subunit B n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY6_CYCTE)

HSP 1 Score: 112 bits (280), Expect = 2.250e-27
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   91 RTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 420
            R  GG R  RVH   NP  L+INE+ +G+++TDV+  +S +E +     G+RL R+A+HLL+Q+S+YPLFPP    AA LD+ H Q+W MP  PD+L+VPSKL  FAR V
Sbjct:  146 REHGGPR--RVHCVANPCTLQINEIVVGMTSTDVIFHMSCEETNENLQPGSRLGRIAQHLLQQRSYYPLFPP----AASLDLGHMQQWAMPCQPDLLIVPSKLTCFARTV 249          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S3LHX7_9STRA (DNA polymerase alpha subunit B (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LHX7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.300e-27
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 KPPFHDRVE--------GGVELGVGAYPEERMFVLDVPRTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 420
            +PP  DR+         GG +  +G       +V ++ R G   R  RVH  PNP  LRINEV IGV++TD+LL  S +E +   P G+RLAR+A+HLL+Q+S++PLFP P      +++   Q W MP  PD+L+ PSKLA   + V
Sbjct:   20 QPPLQDRLPKPQRSNLPGGDDFELGTLGLS--YVENIKREGSDYR--RVHCVPNPCTLRINEVVIGVTSTDILLQTSINETNGHLPAGSRLARIAQHLLQQRSYFPLFPAP------INLDWQQSWDMPCRPDLLICPSKLAPLCKAV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ2_ECTSI3.790e-7580.92DNA polymerase alpha subunit B n=2 Tax=Ectocarpus ... [more]
A0A7S2F9H8_9STRA2.690e-4053.52DNA polymerase alpha subunit B n=1 Tax=Florenciell... [more]
A0A7S3URV2_HETAK2.910e-4053.57DNA polymerase alpha subunit B n=1 Tax=Heterosigma... [more]
K8YQF1_NANGC2.730e-3953.19DNA polymerase alpha subunit B (Fragment) n=1 Tax=... [more]
W7TPC9_9STRA2.760e-3452.86DNA polymerase alpha subunit B n=2 Tax=Monodopsida... [more]
A0A7S2ERG3_9STRA3.560e-3042.76DNA polymerase alpha subunit B n=2 Tax=Ditylum bri... [more]
A0A7S2FH66_9STRA4.990e-2944.37DNA polymerase alpha subunit B n=1 Tax=Dictyocha s... [more]
A0A7S2WMV1_9STRA8.830e-2859.77DNA polymerase alpha subunit B n=1 Tax=Rhizochromu... [more]
A0A7S1CYY6_CYCTE2.250e-2750.91DNA polymerase alpha subunit B n=1 Tax=Cyclophora ... [more]
A0A7S3LHX7_9STRA4.300e-2741.89DNA polymerase alpha subunit B (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85339contigS-dermatodea_contig85339:94..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue3.3e-63
Seed eggNOG ortholog2880.D8LTZ2
Preferred namePOLA2
KEGG rclassRC02795
KEGG koko:K02321
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006273,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0016043,GO:0016070,GO:0016233,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0022616,GO:0030880,GO:0030894,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0046982,GO:0046983,GO:0051276,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1901362,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903047,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG5214@1,KOG1625@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.1461842-CDS-S-dermatodea_contig85339:93..5161622925350.1461842-CDS-S-dermatodea_contig85339:93..516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85339 94..516 -
1694079873.856143-CDS-S-dermatodea_contig85339:93..5161694079873.856143-CDS-S-dermatodea_contig85339:93..516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85339 94..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85339.16704.1prot_S-dermatodea_contig85339.16704.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85339 94..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85339.16704.1

>prot_S-dermatodea_contig85339.16704.1 ID=prot_S-dermatodea_contig85339.16704.1|Name=mRNA_S-dermatodea_contig85339.16704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGGGSRNKRVHLAPNPAWL
RINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLF
PPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDVQ
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mRNA from alignment at S-dermatodea_contig85339:94..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85339.16704.1 ID=mRNA_S-dermatodea_contig85339.16704.1|Name=mRNA_S-dermatodea_contig85339.16704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at S-dermatodea_contig85339:94..516- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCCTCCATTCCACGACCGAGTGGAGGGAGGTGTCGAGCTCGGCGTGGG AGCCTACCCGGAGGAGCGCATGTTCGTGCTCGACGTGCCGAGAACAGGGG GCGGGTCTCGCAACAAGCGCGTCCACCTTGCCCCCAACCCCGCGTGGCTG CGCATAAACGAGGTCACCATCGGGGTGTCCGCGACGGACGTGCTGTTGGA CCTGTCGGGGGACGAGGTTAGCGCGGGCGCGCCAGGGGGGAACAGGCTGG CGAGGCTTGCCGAGCATCTGTTGCGGCAGCAGTCGTTCTACCCACTGTTT CCGCCGCCCGCGGGAGCAGCCGCACAGCTGGACATGCGGCACGCGCAGCG GTGGGGTATGCCGTCGACCCCGGACGTGCTGCTGGTGCCGTCCAAGCTCG CGCAGTTCGCGCGAGATGTGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig85339:94..516-

>mRNA_S-dermatodea_contig85339.16704.1 ID=mRNA_S-dermatodea_contig85339.16704.1|Name=mRNA_S-dermatodea_contig85339.16704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig85339:94..516- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCCTCCATTCCACGACCGAGTGGAGGGAGGTGTCGAGCTCGGCGTGGG
AGCCTACCCGGAGGAGCGCATGTTCGTGCTCGACGTGCCGAGAACAGGGG
GCGGGTCTCGCAACAAGCGCGTCCACCTTGCCCCCAACCCCGCGTGGCTG
CGCATAAACGAGGTCACCATCGGGGTGTCCGCGACGGACGTGCTGTTGGA
CCTGTCGGGGGACGAGGTTAGCGCGGGCGCGCCAGGGGGGAACAGGCTGG
CGAGGCTTGCCGAGCATCTGTTGCGGCAGCAGTCGTTCTACCCACTGTTT
CCGCCGCCCGCGGGAGCAGCCGCACAGCTGGACATGCGGCACGCGCAGCG
GTGGGGTATGCCGTCGACCCCGGACGTGCTGCTGGTGCCGTCCAAGCTCG
CGCAGTTCGCGCGAGATGTGCAGAAGCCTCCATTCCACGACCGAGTGGAG
GGAGGTGTCGAGCTCGGCGTGGGAGCCTACCCGGAGGAGCGCATGTTCGT
GCTCGACGTGCCGAGAACAGGGGGCGGGTCTCGCAACAAGCGCGTCCACC
TTGCCCCCAACCCCGCGTGGCTGCGCATAAACGAGGTCACCATCGGGGTG
TCCGCGACGGACGTGCTGTTGGACCTGTCGGGGGACGAGGTTAGCGCGGG
CGCGCCAGGGGGGAACAGGCTGGCGAGGCTTGCCGAGCATCTGTTGCGGC
AGCAGTCGTTCTACCCACTGTTTCCGCCGCCCGCGGGAGCAGCCGCACAG
CTGGACATGCGGCACGCGCAGCGGTGGGGTATGCCGTCGACCCCGGACGT
GCTGCTGGTGCCGTCCAAGCTCGCGCAGTTCGCGCGAGATGTGCAG
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