prot_S-dermatodea_contig85339.16704.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig85339.16704.1
Unique Nameprot_S-dermatodea_contig85339.16704.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length141
Homology
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 3.790e-75
Identity = 123/152 (80.92%), Postives = 132/152 (86.84%), Query Frame = 0
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTG-----GGS------RNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDVQ 141
            +PPFHDRVEGGVELGVGAYPEERMFVLDVP+TG     GG+      R KRVHLAPNPAWLR+NEVTIGVS+TD L DLSGDEVSAG  G NRLARLA HLL+QQSFYPLFPPPAG+AAQLDMRHA RWGMP+TPDVLLVPS+LAQFAR VQ
Sbjct:  483 QPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAARQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 634          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.690e-40
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 0
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGG-GSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQ---LDMRHAQRWGMPSTPDVLLVPSKLAQFAR 138
            +PPF DRVEGG +     +PEE++F LD+P TGG G  +KRVH   NPA +++NEV +GV++TDVL+ L   E++      NRL RLAEHLL+QQSF+PLFP   G A +   +DM  + R  MP +PDVLLVPS+LA FAR
Sbjct:  151 QPPFADRVEGGQQSPF--FPEEKLFTLDIPHTGGLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFAR 290          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S3URV2_HETAK (DNA polymerase alpha subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URV2_HETAK)

HSP 1 Score: 144 bits (364), Expect = 2.910e-40
Identity = 75/140 (53.57%), Postives = 100/140 (71.43%), Query Frame = 0
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 140
            +PPF D+VEGGV      Y  + +  LD+P + G    KRVH  PNPA L +NEVTIGV++ DVL D+S + V   A  GNR+A+LAE L++QQS+YP++PPP    A+LD+RHA +W MP TPDVL+VPS+LA FA++V
Sbjct:   78 QPPFADKVEGGVPNPF--YEGDTLGTLDIPFSAG--LEKRVHCVPNPATLSLNEVTIGVTSNDVLFDISSNSVMINA--GNRMAKLAELLIQQQSYYPVYPPPERMEAKLDLRHAAKWRMPVTPDVLVVPSRLAYFAKNV 211          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: K8YQF1_NANGC (DNA polymerase alpha subunit B (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQF1_NANGC)

HSP 1 Score: 140 bits (354), Expect = 2.730e-39
Identity = 75/141 (53.19%), Postives = 95/141 (67.38%), Query Frame = 0
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVP-RTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 140
            +PP  DR+ GGV      + EER+  L +P  +     +KR++   NP++  +NEV +GV+  D+L  LSGDEVS     GNRLARLA HLL+QQSF+PLFPPPA   AQLD+RHA  W MP TPDVLL+PSKL  F +DV
Sbjct:   34 QPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNP--GNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHWRMPITPDVLLLPSKLTPFVKDV 170          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.760e-34
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 0
Query:    2 PPFHDRVEGGVELGVGAYPEERMFVLDVP-RTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 140
            PP  DR+ GGV      + EER+  L +P  +     +KR++   NP++  +NEV +GV+  D+L  LSGDEVS     GNRLARLA HLL+QQSF+PLFPPPA   AQLD+RHA    MP TPDVLL+PSKL  F +DV
Sbjct:  486 PPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGADKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSYNP--GNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDV 621          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.560e-30
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 0
Query:    1 KPPFHDRV-EGGVELGVGAYPEERMFVLDVPRTGGGSRN-------KRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAA----AQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 140
            +PP  DR+ +GG +L + +        L +      +R        KR+H  PNP  LRINEVTIG+++TDVL  ++ DE +   P G+RLARL +HL++QQS+YPL+PPP   A      LD++  ++W M   PD+L+VPSKL  FAR V
Sbjct:  469 QPPLSDRLPKGGKQLNLSSAEAIDFGSLGLHHIESANRQPGQSTTPKRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKV 620          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2FH66_9STRA (DNA polymerase alpha subunit B n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FH66_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.990e-29
Identity = 63/142 (44.37%), Postives = 89/142 (62.68%), Query Frame = 0
Query:    1 KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGGGS-RNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQ----LDMRHAQRWGMPSTPDVLLVPSKLAQFA 137
            +PP  D+   GV+     +PEE+ F +++P         KR+HL  NPA LRINEV +G+S+TD+L+ +   E++       RL RLAEHL+ QQSF+PLFP   G  A     LD+  ++RW MP +PD+L++PSKLA FA
Sbjct:  405 QPPLTDQSRKGVKSPW--FPEEKYFDVEIPFAAQTEVTGKRMHLVSNPAMLRINEVVVGISSTDILMSMGRAEIAENPKNKQRLPRLAEHLVNQQSFFPLFPANGGVKANEDVPLDLSQSERWRMPVSPDILILPSKLATFA 544          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S2WMV1_9STRA (DNA polymerase alpha subunit B n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMV1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.830e-28
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 0
Query:   52 INEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFAR 138
            INEV +GV++TD LL L  +E+S      NR+ RLAEH++ QQSFYPLFPPP+  A  LDMR  ++W MP +PDVL+VPSKLA FAR
Sbjct:    1 INEVIVGVTSTDALLHLGKEEISQSPASSNRITRLAEHMVLQQSFYPLFPPPSVDACPLDMRFNEKWRMPVSPDVLIVPSKLANFAR 87          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S1CYY6_CYCTE (DNA polymerase alpha subunit B n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY6_CYCTE)

HSP 1 Score: 112 bits (280), Expect = 2.250e-27
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 0
Query:   31 RTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 140
            R  GG R  RVH   NP  L+INE+ +G+++TDV+  +S +E +     G+RL R+A+HLL+Q+S+YPLFPP    AA LD+ H Q+W MP  PD+L+VPSKL  FAR V
Sbjct:  146 REHGGPR--RVHCVANPCTLQINEIVVGMTSTDVIFHMSCEETNENLQPGSRLGRIAQHLLQQRSYYPLFPP----AASLDLGHMQQWAMPCQPDLLIVPSKLTCFARTV 249          
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Match: A0A7S3LHX7_9STRA (DNA polymerase alpha subunit B (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LHX7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.300e-27
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 0
Query:    1 KPPFHDRVE--------GGVELGVGAYPEERMFVLDVPRTGGGSRNKRVHLAPNPAWLRINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLFPPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDV 140
            +PP  DR+         GG +  +G       +V ++ R G   R  RVH  PNP  LRINEV IGV++TD+LL  S +E +   P G+RLAR+A+HLL+Q+S++PLFP P      +++   Q W MP  PD+L+ PSKLA   + V
Sbjct:   20 QPPLQDRLPKPQRSNLPGGDDFELGTLGLS--YVENIKREGSDYR--RVHCVPNPCTLRINEVVIGVTSTDILLQTSINETNGHLPAGSRLARIAQHLLQQRSYFPLFPAP------INLDWQQSWDMPCRPDLLICPSKLAPLCKAV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85339.16704.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ2_ECTSI3.790e-7580.92DNA polymerase alpha subunit B n=2 Tax=Ectocarpus ... [more]
A0A7S2F9H8_9STRA2.690e-4053.52DNA polymerase alpha subunit B n=1 Tax=Florenciell... [more]
A0A7S3URV2_HETAK2.910e-4053.57DNA polymerase alpha subunit B n=1 Tax=Heterosigma... [more]
K8YQF1_NANGC2.730e-3953.19DNA polymerase alpha subunit B (Fragment) n=1 Tax=... [more]
W7TPC9_9STRA2.760e-3452.86DNA polymerase alpha subunit B n=2 Tax=Monodopsida... [more]
A0A7S2ERG3_9STRA3.560e-3042.76DNA polymerase alpha subunit B n=2 Tax=Ditylum bri... [more]
A0A7S2FH66_9STRA4.990e-2944.37DNA polymerase alpha subunit B n=1 Tax=Dictyocha s... [more]
A0A7S2WMV1_9STRA8.830e-2859.77DNA polymerase alpha subunit B n=1 Tax=Rhizochromu... [more]
A0A7S1CYY6_CYCTE2.250e-2750.91DNA polymerase alpha subunit B n=1 Tax=Cyclophora ... [more]
A0A7S3LHX7_9STRA4.300e-2741.89DNA polymerase alpha subunit B (Fragment) n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007185DNA polymerase alpha/delta/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 38..137
e-value: 1.8E-16
score: 60.2
IPR016722DNA polymerase alpha, subunit BPANTHERPTHR23061DNA POLYMERASE 2 ALPHA 70 KDA SUBUNITcoord: 37..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85339contigS-dermatodea_contig85339:94..516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85339.16704.1mRNA_S-dermatodea_contig85339.16704.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig85339 94..516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig85339.16704.1 ID=prot_S-dermatodea_contig85339.16704.1|Name=mRNA_S-dermatodea_contig85339.16704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
KPPFHDRVEGGVELGVGAYPEERMFVLDVPRTGGGSRNKRVHLAPNPAWL
RINEVTIGVSATDVLLDLSGDEVSAGAPGGNRLARLAEHLLRQQSFYPLF
PPPAGAAAQLDMRHAQRWGMPSTPDVLLVPSKLAQFARDVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_a/d/e_bsu
IPR016722DNA_pol_alpha_bsu